mRNA_H-elongata_contig137348.2627.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137348.2627.1
Unique NamemRNA_H-elongata_contig137348.2627.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig137348.2627.1 vs. uniprot
Match: D7FM58_ECTSI (Adenine DNA glycosylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM58_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 1.000e-42
Identity = 75/95 (78.95%), Postives = 85/95 (89.47%), Query Frame = 1 
Query:    1 QVNKAWAGLGYYRRAKMLHEGAKLLQTEHRGLLPCTAKDLIKIPGIGRYTAAGAVASIAFGKCEPLVDGNVIRVLSRLKAVASDPKNAALNRLCW 285
            QVNKAWAGLGYYRRAKMLHEGAK + ++H G LP TAK+L  +PGIG YTA GAVASIAFG+CEPLVDGNVIRVL+RL+A+ASDPKNA LN+LCW
Sbjct:  219 QVNKAWAGLGYYRRAKMLHEGAKKVVSDHSGCLPGTAKELKDLPGIGPYTA-GAVASIAFGECEPLVDGNVIRVLARLRAIASDPKNAGLNKLCW 312
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BLAST of mRNA_H-elongata_contig137348.2627.1 vs. uniprot
Match: A0A6B2L4Y2_9EUKA (Adenine DNA glycosylase (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L4Y2_9EUKA)

HSP 1 Score: 129 bits (325), Expect = 5.110e-34
Identity = 60/95 (63.16%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:    1 QVNKAWAGLGYYRRAKMLHEGAKLLQTEHRGLLPCTAKDLIKIPGIGRYTAAGAVASIAFGKCEPLVDGNVIRVLSRLKAVASDPKNAALNRLCW 285
            +VN+ W+GLGYYRRAK LH  AKL+  +H G LP T  +L+K+PGIG+YTA GAV+SIAFG+C PLVDGNVIRVLSRL+ + +DPK + +N+L W
Sbjct:   82 RVNEMWSGLGYYRRAKYLHSSAKLVMEKHNGQLPQTCSELLKLPGIGQYTA-GAVSSIAFGECTPLVDGNVIRVLSRLRFIRADPKASKINKLYW 175
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BLAST of mRNA_H-elongata_contig137348.2627.1 vs. uniprot
Match: A0A835YL60_9STRA (Adenine DNA glycosylase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL60_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.280e-31
Identity = 58/94 (61.70%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:    4 VNKAWAGLGYYRRAKMLHEGAKLLQTEHRGLLPCTAKDLIKIPGIGRYTAAGAVASIAFGKCEPLVDGNVIRVLSRLKAVASDPKNAALNRLCW 285
            VN  WAGLGYYRRA++LH GA+ +  E  G LP  A +L  IPGIG YTA GA++SIAF + EP+VDGNV+RVLSRL+A A+ PK+ AL  LCW
Sbjct:   35 VNAMWAGLGYYRRARLLHSGARAVVAERAGRLPRAAAELRAIPGIGPYTA-GAISSIAFAQREPVVDGNVVRVLSRLRACAASPKSNALVALCW 127
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BLAST of mRNA_H-elongata_contig137348.2627.1 vs. uniprot
Match: A0A024G1X1_9STRA (Adenine DNA glycosylase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G1X1_9STRA)

HSP 1 Score: 122 bits (306), Expect = 3.200e-31
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = 1 
Query:    1 QVNKAWAGLGYYRRAKMLHEGAKLLQTEHRGLLPCTAKDLIKIPGIGRYTAAGAVASIAFGKCEPLVDGNVIRVLSRLKAVASDPKNAALNRLCW 285
            +VN  WAGLGYYRRA+MLH GAK +   + G LP + + L+ IPGIGRYTA GA+ASIAF + EPLVDGNVIRV++RL+AV +DPKN  L  L W
Sbjct:  152 EVNSMWAGLGYYRRARMLHAGAKYVMEHYNGELPSSVEALLTIPGIGRYTA-GAIASIAFDQKEPLVDGNVIRVMARLRAVGADPKNKKLVDLSW 245
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BLAST of mRNA_H-elongata_contig137348.2627.1 vs. uniprot
Match: F0VZV0_9STRA (Adenine DNA glycosylase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZV0_9STRA)

HSP 1 Score: 122 bits (307), Expect = 8.530e-31
Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 1 
Query:    1 QVNKAWAGLGYYRRAKMLHEGAKLLQTEHRGLLPCTAKDLIKIPGIGRYTAAGAVASIAFGKCEPLVDGNVIRVLSRLKAVASDPKNAALNRLCW 285
            +VN  WAGLGYYRRA+MLH GAK +  ++ G LP + + L+ IPGIGRYTA GA+ASIAF K EPLVDGNVIRV++RL+AV +DPKN  +  L W
Sbjct:  156 EVNSMWAGLGYYRRARMLHAGAKYVMEKYDGELPSSVEALLTIPGIGRYTA-GAIASIAFDKKEPLVDGNVIRVMARLRAVGADPKNKKMIDLSW 249
[Close]
BLAST of mRNA_H-elongata_contig137348.2627.1 vs. uniprot
Match: A0A3M6VJ24_9STRA (Adenine DNA glycosylase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJ24_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.130e-30
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:    4 VNKAWAGLGYYRRAKMLHEGAKLLQTEHRGLLPCTAKDLIKIPGIGRYTAAGAVASIAFGKCEPLVDGNVIRVLSRLKAVASDPKNAALNRLCW 285
            VN  WAGLGYYRRA+MLH GAK +  ++ G LP T   L+ IPGIG YTA GA+ASIAFG  EPLVDGNVIRV++R++AV +DPKN  L +  W
Sbjct:  181 VNALWAGLGYYRRARMLHAGAKYVMEKYEGELPSTVDQLLTIPGIGPYTA-GAIASIAFGNREPLVDGNVIRVMARIRAVGADPKNKQLIKFSW 273
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BLAST of mRNA_H-elongata_contig137348.2627.1 vs. uniprot
Match: A0A0W8DKR7_PHYNI (Adenine DNA glycosylase n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DKR7_PHYNI)

HSP 1 Score: 119 bits (298), Expect = 2.480e-30
Identity = 59/94 (62.77%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:    4 VNKAWAGLGYYRRAKMLHEGAKLLQTEHRGLLPCTAKDLIKIPGIGRYTAAGAVASIAFGKCEPLVDGNVIRVLSRLKAVASDPKNAALNRLCW 285
            VN  WAGLGYYRRA+MLH GAK +   + G LP T   L+ IPGIG YTA GA+ASIAFG  EPLVDGNVIRV++R++AV +DPKN  L    W
Sbjct:   61 VNALWAGLGYYRRARMLHAGAKYVVENYGGELPSTVDQLLTIPGIGPYTA-GAIASIAFGNREPLVDGNVIRVMARMRAVGADPKNKQLINFSW 153
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BLAST of mRNA_H-elongata_contig137348.2627.1 vs. uniprot
Match: A0A225W1J9_9STRA (Adenine DNA glycosylase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W1J9_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.190e-30
Identity = 59/94 (62.77%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:    4 VNKAWAGLGYYRRAKMLHEGAKLLQTEHRGLLPCTAKDLIKIPGIGRYTAAGAVASIAFGKCEPLVDGNVIRVLSRLKAVASDPKNAALNRLCW 285
            VN  WAGLGYYRRA+MLH GAK +   + G +P T   L+ IPGIG YTA GA+ASIAFG  EPLVDGNVIRVL+R++AV +DPKN  L +  W
Sbjct:   70 VNALWAGLGYYRRARMLHAGAKYVMENYGGEVPSTVDQLLTIPGIGPYTA-GAIASIAFGNREPLVDGNVIRVLARMRAVGADPKNKQLIKFSW 162
[Close]
BLAST of mRNA_H-elongata_contig137348.2627.1 vs. uniprot
Match: A0A329SIH5_9STRA (Adenine DNA glycosylase n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SIH5_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.140e-29
Identity = 60/94 (63.83%), Postives = 69/94 (73.40%), Query Frame = 1 
Query:    4 VNKAWAGLGYYRRAKMLHEGAKLLQTEHRGLLPCTAKDLIKIPGIGRYTAAGAVASIAFGKCEPLVDGNVIRVLSRLKAVASDPKNAALNRLCW 285
            VN  WAGLGYYRRA+MLH GAK +   + G LP T   L+ IPGIG YTA GA+ASIAFG  EPLVDGNVIRV++R++AV SDPKN  L    W
Sbjct:  178 VNALWAGLGYYRRARMLHAGAKYVVENYGGELPSTVDQLLTIPGIGPYTA-GAIASIAFGSREPLVDGNVIRVMARVRAVGSDPKNKQLINFSW 270
[Close]
BLAST of mRNA_H-elongata_contig137348.2627.1 vs. uniprot
Match: A0A833SGU5_PHYIN (Adenine DNA glycosylase n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SGU5_PHYIN)

HSP 1 Score: 119 bits (299), Expect = 1.490e-29
Identity = 59/94 (62.77%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:    4 VNKAWAGLGYYRRAKMLHEGAKLLQTEHRGLLPCTAKDLIKIPGIGRYTAAGAVASIAFGKCEPLVDGNVIRVLSRLKAVASDPKNAALNRLCW 285
            VN  WAGLGYYRRA+MLH GAK +   + G LP T   L+ IPGIG YTA GA+ASIAFG  EPLVDGNVIRV++R++AV +DPKN  L +  W
Sbjct:  181 VNALWAGLGYYRRARMLHAGAKYVVENYDGELPSTVDQLLTIPGIGPYTA-GAIASIAFGNREPLVDGNVIRVMARMRAVGADPKNKQLIKYSW 273
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137348.2627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM58_ECTSI1.000e-4278.95Adenine DNA glycosylase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6B2L4Y2_9EUKA5.110e-3463.16Adenine DNA glycosylase (Fragment) n=1 Tax=Arcella... [more]
A0A835YL60_9STRA1.280e-3161.70Adenine DNA glycosylase (Fragment) n=1 Tax=Tribone... [more]
A0A024G1X1_9STRA3.200e-3163.16Adenine DNA glycosylase n=1 Tax=Albugo candida Tax... [more]
F0VZV0_9STRA8.530e-3163.16Adenine DNA glycosylase n=1 Tax=Albugo laibachii N... [more]
A0A3M6VJ24_9STRA2.130e-3062.77Adenine DNA glycosylase n=1 Tax=Peronospora effusa... [more]
A0A0W8DKR7_PHYNI2.480e-3062.77Adenine DNA glycosylase n=1 Tax=Phytophthora nicot... [more]
A0A225W1J9_9STRA3.190e-3062.77Adenine DNA glycosylase n=1 Tax=Phytophthora megak... [more]
A0A329SIH5_9STRA1.140e-2963.83Adenine DNA glycosylase n=1 Tax=Phytophthora cacto... [more]
A0A833SGU5_PHYIN1.490e-2962.77Adenine DNA glycosylase n=1 Tax=Phytophthora infes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137348contigH-elongata_contig137348:190..789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue2.3e-36
Seed eggNOG ortholog2880.D7FM58
Preferred nameMUTYH
KEGG koko:K03575,ko:K21121
KEGG Pathwayko03410,map03410
GOsGO:0000075,GO:0000077,GO:0000700,GO:0000701,GO:0000702,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006298,GO:0006304,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0008150,GO:0008152,GO:0008534,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009893,GO:0009987,GO:0010604,GO:0016787,GO:0016798,GO:0016799,GO:0019104,GO:0019219,GO:0019222,GO:0030983,GO:0031323,GO:0031325,GO:0031570,GO:0031974,GO:0031981,GO:0032069,GO:0032075,GO:0032356,GO:0032357,GO:0032404,GO:0032407,GO:0033554,GO:0034039,GO:0034641,GO:0034644,GO:0035485,GO:0042769,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045007,GO:0045786,GO:0045935,GO:0046483,GO:0048037,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051336,GO:0051345,GO:0051536,GO:0051539,GO:0051540,GO:0051606,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0072421,GO:0080090,GO:0090304,GO:0097159,GO:0104004,GO:0140097,GO:1901360,GO:1901363,GO:1902799,GO:1902800,GO:1905777,GO:1905779
EggNOG free text desc.purine-specific mismatch base pair DNA N-glycosylase activity
EggNOG OGsCOG1194@1,KOG2457@2759
EC2.3.1.259
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929815.7135062-CDS-H-elongata_contig137348:189..3431622929815.7135062-CDS-H-elongata_contig137348:189..343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137348 190..343 +
1691679168.3569815-CDS-H-elongata_contig137348:189..3431691679168.3569815-CDS-H-elongata_contig137348:189..343Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137348 190..343 +
1622929815.7271242-CDS-H-elongata_contig137348:655..7891622929815.7271242-CDS-H-elongata_contig137348:655..789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137348 656..789 +
1691679168.3672762-CDS-H-elongata_contig137348:655..7891691679168.3672762-CDS-H-elongata_contig137348:655..789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137348 656..789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137348.2627.1prot_H-elongata_contig137348.2627.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137348 190..789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137348.2627.1

>prot_H-elongata_contig137348.2627.1 ID=prot_H-elongata_contig137348.2627.1|Name=mRNA_H-elongata_contig137348.2627.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
QVNKAWAGLGYYRRAKMLHEGAKLLQTEHRGLLPCTAKDLIKIPGIGRYT
AAGAVASIAFGKCEPLVDGNVIRVLSRLKAVASDPKNAALNRLCW*
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mRNA from alignment at H-elongata_contig137348:190..789+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137348.2627.1 ID=mRNA_H-elongata_contig137348.2627.1|Name=mRNA_H-elongata_contig137348.2627.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=600bp|location=Sequence derived from alignment at H-elongata_contig137348:190..789+ (Himanthalia elongata Himel1 dioecious)
CAGGTAAACAAGGCCTGGGCAGGTCTGGGGTACTACCGCCGAGCCAAAAT
GCTGCACGAAGGAGCGAAGCTGTTGCAGACGGAGCACAGAGGTTTGCTAC
CTTGCACAGCCAAGGACCTCATCAAGATACCGGGTATCGGGCGTTACACG
GCAGGTTTGAGCTATTTTACGCCGCTCTATCTCCATCACCAATACTGGGA
ATGCTCGAAATAGAAATAGAAATAGAAATAGAGTGATGCTGTGCGCCAGA
GAACTGCGAACTGCCACTTGGTTCTGCTTTGAACTCGCAAGGACAAGGAG
CCGTGACGATCCTGCTCTCACAGCCCGCGATAATTCCGAGCAGAATTTCT
GTGCGTCCGCTTGACCACTCGAACGACCTGAGCTCGATGCAATTTGCTTT
AGTGATACACACATTTACGATGGCAAGTGCATGTGACCAGACCCCTTCCA
TTTCGGACGTTCTAAGCAGGCGCGGTGGCTTCGATAGCCTTTGGAAAGTG
CGAGCCGCTGGTTGACGGCAACGTCATCCGGGTGCTCTCGAGGTTGAAAG
CTGTGGCGTCTGATCCAAAGAATGCAGCACTCAACAGACTCTGCTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig137348:190..789+

>mRNA_H-elongata_contig137348.2627.1 ID=mRNA_H-elongata_contig137348.2627.1|Name=mRNA_H-elongata_contig137348.2627.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig137348:190..789+ (Himanthalia elongata Himel1 dioecious)
CAGGTAAACAAGGCCTGGGCAGGTCTGGGGTACTACCGCCGAGCCAAAAT
GCTGCACGAAGGAGCGAAGCTGTTGCAGACGGAGCACAGAGGTTTGCTAC
CTTGCACAGCCAAGGACCTCATCAAGATACCGGGTATCGGGCGTTACACG
GCAGCAGGTAAACAAGGCCTGGGCAGGTCTGGGGTACTACCGCCGAGCCA
AAATGCTGCACGAAGGAGCGAAGCTGTTGCAGACGGAGCACAGAGGTTTG
CTACCTTGCACAGCCAAGGACCTCATCAAGATACCGGGTATCGGGCGTTA
CACGGCAGCAGGCGCGGTGGCTTCGATAGCCTTTGGAAAGTGCGAGCCGC
TGGTTGACGGCAACGTCATCCGGGTGCTCTCGAGGTTGAAAGCTGTGGCG
TCTGATCCAAAGAATGCAGCACTCAACAGACTCTGCTGGTGACAGGCGCG
GTGGCTTCGATAGCCTTTGGAAAGTGCGAGCCGCTGGTTGACGGCAACGT
CATCCGGGTGCTCTCGAGGTTGAAAGCTGTGGCGTCTGATCCAAAGAATG
CAGCACTCAACAGACTCTGCTGGTGA
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