mRNA_H-elongata_contig137327.2625.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137327.2625.1
Unique NamemRNA_H-elongata_contig137327.2625.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig137327.2625.1 vs. uniprot
Match: D7FQQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ4_ECTSI)

HSP 1 Score: 327 bits (838), Expect = 1.340e-106
Identity = 152/177 (85.88%), Postives = 166/177 (93.79%), Query Frame = 1 
Query:    1 QAELSRFVEEKIQMHKQTARSLQLNGSIKSGGTSLFGGGCSMVLPSSNNAGTIFKNSALHWERRVDELAAVTSGKPINSAILPGERWFIVDARWMDHWLEFCTSKRRMAPPGPIDNSWMLHAEKRHVPYEGLTLAQGKEAGDYRRVGHECWDQLMRLYGGGPAIYVDGPPVEDLSRY 531
            +AELSRFVEEK+ MHK++ARSL LNGS+KSGGTSLFGGG SMVLP++NNAGTIFKNSAL WE RV ELAAVT+GKPI S + PGERWFIVDARWMDHWLEFCTSKRRM+PPGPIDNSWMLH+EKRH+PYEGLTLA GK+AGDYRRVG ECWDQLMRLYGGGPAIYVDGPPVEDLSR+
Sbjct:  348 EAELSRFVEEKLVMHKRSARSLYLNGSMKSGGTSLFGGGGSMVLPTANNAGTIFKNSALQWEHRVQELAAVTAGKPITSPMQPGERWFIVDARWMDHWLEFCTSKRRMSPPGPIDNSWMLHSEKRHIPYEGLTLAMGKQAGDYRRVGMECWDQLMRLYGGGPAIYVDGPPVEDLSRW 524
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BLAST of mRNA_H-elongata_contig137327.2625.1 vs. uniprot
Match: A0A6H5K5V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5V0_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 3.010e-105
Identity = 153/177 (86.44%), Postives = 166/177 (93.79%), Query Frame = 1 
Query:    1 QAELSRFVEEKIQMHKQTARSLQLNGSIKSGGTSLFGGGCSMVLPSSNNAGTIFKNSALHWERRVDELAAVTSGKPINSAILPGERWFIVDARWMDHWLEFCTSKRRMAPPGPIDNSWMLHAEKRHVPYEGLTLAQGKEAGDYRRVGHECWDQLMRLYGGGPAIYVDGPPVEDLSRY 531
            +AELSRFVEEK+ MHK++ARSL LNGSIKSGGTSLFGGG SMVLP++NNAGTIFKNSAL WE RV ELAAVT+GKPI S + PGERWFIVDARWMDHWLEFCTSKRRM+PPGPIDNSWMLH+EKRH+PYEGLTLA GK+AGDYRRVG ECWDQLMRLYGGGPAIYVDGPPVEDLSR+
Sbjct:  537 EAELSRFVEEKLTMHKRSARSLYLNGSIKSGGTSLFGGGGSMVLPTANNAGTIFKNSALQWEHRVQELAAVTAGKPITSPMQPGERWFIVDARWMDHWLEFCTSKRRMSPPGPIDNSWMLHSEKRHIPYEGLTLAMGKQAGDYRRVGAECWDQLMRLYGGGPAIYVDGPPVEDLSRW 713
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BLAST of mRNA_H-elongata_contig137327.2625.1 vs. uniprot
Match: A0A7S4P816_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4P816_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 5.500e-5
Identity = 26/89 (29.21%), Postives = 46/89 (51.69%), Query Frame = 1 
Query:  250 GERWFIVDARWMDHWLEFCTSKRRMAPPGPIDNSWMLHAEKRHVPYEGLT-------LAQG-KEAGDYRRVGHECWDQLMRLYGGGPAI 492
            G+ ++++ ARW +HW ++  S++    P PIDN W L  +K+ +P +  +       L Q   +  D+  +  + W  L   YGGGP +
Sbjct:  191 GDIYYVISARWYNHWKDWVKSEKDERSPPPIDN-WHLVVKKKEIPGDKKSNTSNWHRLKQNLMKNDDFVTLPSQVWSALFNWYGGGPIL 278
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137327.2625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQQ4_ECTSI1.340e-10685.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5V0_9PHAE3.010e-10586.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4P816_9EUKA5.500e-529.21Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137327contigH-elongata_contig137327:252..1646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score60.8
Seed ortholog evalue7.2e-07
Seed eggNOG ortholog78898.MVEG_07382T0
KEGG koko:K11839
KEGG Pathwayko04137,ko04144,ko04934,map04137,map04144,map04934
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs39KJR@33154,3PABM@4751,COG5560@1,KOG1870@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size531
Cds size531
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137327.2625.1prot_H-elongata_contig137327.2625.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137327 252..1646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929815.5187175-CDS-H-elongata_contig137327:251..4081622929815.5187175-CDS-H-elongata_contig137327:251..408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137327 252..408 -
1691679168.2734215-CDS-H-elongata_contig137327:251..4081691679168.2734215-CDS-H-elongata_contig137327:251..408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137327 252..408 -
1622929815.5402286-CDS-H-elongata_contig137327:669..8781622929815.5402286-CDS-H-elongata_contig137327:669..878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137327 670..878 -
1691679168.2841809-CDS-H-elongata_contig137327:669..8781691679168.2841809-CDS-H-elongata_contig137327:669..878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137327 670..878 -
1622929815.5597289-CDS-H-elongata_contig137327:1481..16461622929815.5597289-CDS-H-elongata_contig137327:1481..1646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137327 1482..1646 -
1691679168.292935-CDS-H-elongata_contig137327:1481..16461691679168.292935-CDS-H-elongata_contig137327:1481..1646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137327 1482..1646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137327.2625.1

>prot_H-elongata_contig137327.2625.1 ID=prot_H-elongata_contig137327.2625.1|Name=mRNA_H-elongata_contig137327.2625.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp
QAELSRFVEEKIQMHKQTARSLQLNGSIKSGGTSLFGGGCSMVLPSSNNA
GTIFKNSALHWERRVDELAAVTSGKPINSAILPGERWFIVDARWMDHWLE
FCTSKRRMAPPGPIDNSWMLHAEKRHVPYEGLTLAQGKEAGDYRRVGHEC
WDQLMRLYGGGPAIYVDGPPVEDLSRY
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mRNA from alignment at H-elongata_contig137327:252..1646-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137327.2625.1 ID=mRNA_H-elongata_contig137327.2625.1|Name=mRNA_H-elongata_contig137327.2625.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1395bp|location=Sequence derived from alignment at H-elongata_contig137327:252..1646- (Himanthalia elongata Himel1 dioecious)
CAGGCGGAGCTGTCTCGTTTCGTGGAGGAAAAGATCCAGATGCACAAGCA
AACGGCGCGAAGCTTGCAGCTGAATGGTTCCATCAAAAGTGGGGGGACTA
GTCTCTTCGGGGGAGGGTGCTCCATGGTGCTACCCTCGTCGAACAATGCC
GGCACGATATTCAAGGTACAATATGATTCGGGTACAATAATACACGAAAC
CTTGCAAGCTTTAGTTGTGGTCTCTAGAACTGAGGAGACGTGGAAATTCC
ATTTTTGAAAGTCTCCAGCTGTAGAGCTAAATATCGATTGTCAAGAGTGT
CAAGAGCATGTCAGCCCGCCATGTTGAGATCGTCAGTGTTGTCAATGTTG
GTCCTCTTTGATTGTTTTGAAATCGATGACATAAGTAAGTGTTCGTCTAT
ACGATGAAATGTTGCGAACATCAAAACTCGGGGAAGAGCCAAGCGTCTTT
TGCGCACGATAGTGCATTACCAGAACCTTCGAAGCAGCTGTGCGGCGCGC
ACCGCATTTCCCAATCCAGCGCCTGCTAGGCTTGAAGGGGTCGTTCCCTA
CCTTCCGGTTGAGGCAACGGCTGAACGCCTCCACAATTTTTGTCATGGTC
CCAGGTGAAATTAATCAAGTCTCCATTGCTAGGGCGACGCGAGGCCCCGC
TCCTTCAGTCTGAGGTTGTAGTTCGGCTCGCTGTGAAGTAATCCTTATCG
TCGCTTGGCTTACGCTCATGACCCTGTTCGATTGAAAACGTTTCTTGTGG
TGCCGCCTCTCCTCCCAGAACTCTGCGCTGCACTGGGAGCGGCGTGTGGA
CGAGCTGGCGGCCGTAACATCGGGCAAGCCCATCAACTCCGCCATCCTTC
CAGGTGAACGGTGGTTTATCGTCGACGCTCGATGGATGGACCACTGGCTG
GAGTTTTGCACCAGCAAGAGGAGAATGGCCCCTCCGGGACCAATCGACAA
CTCCTGGATGCTTCACGCGGAAAAGAGGTGACGTCATCACGGCGCGTGTA
TCGATGGAGCATGTTTGCGCTGTGCTTGCATTACTCGTGGTGTTTTATTT
TTCTATGCTGTGTCCGCTGTGGCTGTCATAGAGTGGTGGTCTAGGAGACG
AGTTGCGGAGGAATGAGGTGTCGAGGGGCGGGGGCTTTGCCTAGCCTTGA
GCGTAATTCAGCCAGTCAGTCTATCAGCGAGGCAGCGATTATGAATGCAT
ATTTTCCACTGTGTCTTGCGTCGGGTATGCGGGCGCAGGCATGTTCCGTA
CGAGGGTCTGACGTTGGCGCAAGGCAAAGAGGCGGGAGACTACCGGAGAG
TGGGTCATGAGTGCTGGGATCAGCTCATGAGGCTGTACGGAGGCGGACCC
GCTATCTACGTCGATGGGCCGCCCGTAGAAGACCTCTCAAGGTAC
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Coding sequence (CDS) from alignment at H-elongata_contig137327:252..1646-

>mRNA_H-elongata_contig137327.2625.1 ID=mRNA_H-elongata_contig137327.2625.1|Name=mRNA_H-elongata_contig137327.2625.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at H-elongata_contig137327:252..1646- (Himanthalia elongata Himel1 dioecious)
CAGGCGGAGCTGTCTCGTTTCGTGGAGGAAAAGATCCAGATGCACAAGCA
AACGGCGCGAAGCTTGCAGCTGAATGGTTCCATCAAAAGTGGGGGGACTA
GTCTCTTCGGGGGAGGGTGCTCCATGGTGCTACCCTCGTCGAACAATGCC
GGCACGATATTCAAGCAGGCGGAGCTGTCTCGTTTCGTGGAGGAAAAGAT
CCAGATGCACAAGCAAACGGCGCGAAGCTTGCAGCTGAATGGTTCCATCA
AAAGTGGGGGGACTAGTCTCTTCGGGGGAGGGTGCTCCATGGTGCTACCC
TCGTCGAACAATGCCGGCACGATATTCAAGAACTCTGCGCTGCACTGGGA
GCGGCGTGTGGACGAGCTGGCGGCCGTAACATCGGGCAAGCCCATCAACT
CCGCCATCCTTCCAGGTGAACGGTGGTTTATCGTCGACGCTCGATGGATG
GACCACTGGCTGGAGTTTTGCACCAGCAAGAGGAGAATGGCCCCTCCGGG
ACCAATCGACAACTCCTGGATGCTTCACGCGGAAAAGAGAACTCTGCGCT
GCACTGGGAGCGGCGTGTGGACGAGCTGGCGGCCGTAACATCGGGCAAGC
CCATCAACTCCGCCATCCTTCCAGGTGAACGGTGGTTTATCGTCGACGCT
CGATGGATGGACCACTGGCTGGAGTTTTGCACCAGCAAGAGGAGAATGGC
CCCTCCGGGACCAATCGACAACTCCTGGATGCTTCACGCGGAAAAGAGGC
ATGTTCCGTACGAGGGTCTGACGTTGGCGCAAGGCAAAGAGGCGGGAGAC
TACCGGAGAGTGGGTCATGAGTGCTGGGATCAGCTCATGAGGCTGTACGG
AGGCGGACCCGCTATCTACGTCGATGGGCCGCCCGTAGAAGACCTCTCAA
GGTACGCATGTTCCGTACGAGGGTCTGACGTTGGCGCAAGGCAAAGAGGC
GGGAGACTACCGGAGAGTGGGTCATGAGTGCTGGGATCAGCTCATGAGGC
TGTACGGAGGCGGACCCGCTATCTACGTCGATGGGCCGCCCGTAGAAGAC
CTCTCAAGGTAC
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