mRNA_H-elongata_contig13729.2624.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13729.2624.1
Unique NamemRNA_H-elongata_contig13729.2624.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13729.2624.1 vs. uniprot
Match: D8LU51_ECTSI (PEROXIDASE_4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU51_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 6.610e-35
Identity = 62/74 (83.78%), Postives = 66/74 (89.19%), Query Frame = 1
Query:    4 INQDLVIMMEAEDSKREDGSSIAGTLVRLAWHASGTYSKGDNTGGSNGACMRMSPEKDWGANAGLGVARDFIEG 225
            I +DL  MMEAED+ REDG+SIAGTLVRLAWHASGTYSK D TGGSNGACMRMSPEKDWGANAGL VARDF+ G
Sbjct:   83 IKKDLEAMMEAEDASREDGTSIAGTLVRLAWHASGTYSKADGTGGSNGACMRMSPEKDWGANAGLDVARDFVVG 156          
BLAST of mRNA_H-elongata_contig13729.2624.1 vs. uniprot
Match: A0A7S1XUV8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUV8_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.970e-25
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    4 INQDLVIMMEAEDSKREDGSSIAGTLVRLAWHASGTYSKGDNTGGSNGACMRMSPEKDWGANAGLGVARDFIE 222
            +  D+  ++EA+++KR DG+S+AGT VRLAWHASGTYS  D TGGSNGA MR  PE  WGANAGLGVARD +E
Sbjct:   39 VKDDIKAIIEADEAKRGDGTSLAGTFVRLAWHASGTYSVKDKTGGSNGATMRFEPESAWGANAGLGVARDALE 111          
BLAST of mRNA_H-elongata_contig13729.2624.1 vs. uniprot
Match: A0A482SDA4_9ARCH (PEROXIDASE_4 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDA4_9ARCH)

HSP 1 Score: 102 bits (253), Expect = 5.440e-25
Identity = 48/73 (65.75%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    4 INQDLVIMMEAEDSKREDGSSIAGTLVRLAWHASGTYSKGDNTGGSNGACMRMSPEKDWGANAGLGVARDFIE 222
            +  D++  +EAEDS+R DG+SI  TLVRLAWHA+GTYS  D TGGSNGA MR SPE DWGAN GL  ARD +E
Sbjct:   68 VKADIIAAIEAEDSRRSDGTSIGPTLVRLAWHAAGTYSIHDKTGGSNGASMRYSPESDWGANKGLKGARDLLE 140          
BLAST of mRNA_H-elongata_contig13729.2624.1 vs. uniprot
Match: A0A7S0SWF4_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWF4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.000e-24
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    4 INQDLVIMMEAEDSKREDGSSIAGTLVRLAWHASGTYSKGDNTGGSNGACMRMSPEKDWGANAGLGVARDFI 219
            + QD++ ++E ++  REDG+SIAGTLVRLAWHASGTYS  D+TGGSNG+ MR  PE  WGANAGL +AR+F+
Sbjct:   64 VKQDIIKLIEFDNDFREDGTSIAGTLVRLAWHASGTYSNVDHTGGSNGSTMRYPPESQWGANAGLAIAREFL 135          
BLAST of mRNA_H-elongata_contig13729.2624.1 vs. uniprot
Match: A0A7S2HS73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HS73_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.200e-24
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    4 INQDLVIMMEAEDSKREDGSSIAGTLVRLAWHASGTYSKGDNTGGSNGACMRMSPEKDWGANAGLGVARDFIE 222
            + + +V ++E +  KR DG+S+ GT VRLAWH +GTYSK D +GGSNGA MR +PE  WGANAGLGVARD +E
Sbjct:   47 VRKSIVDVIETDAEKRGDGTSLTGTFVRLAWHCAGTYSKEDGSGGSNGARMRFTPESSWGANAGLGVARDALE 119          
BLAST of mRNA_H-elongata_contig13729.2624.1 vs. uniprot
Match: A0A7S1YJW7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YJW7_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.630e-23
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    4 INQDLVIMMEAEDSKREDGSSIAGTLVRLAWHASGTYSKGDNTGGSNGACMRMSPEKDWGANAGLGVARDFIE 222
            +   +V +ME +  KR DG+S+AGT +RLAWH SGTYSK D TGGSNGA MR  PE  WGANAGLGVAR  +E
Sbjct:   83 VRDTIVSVMEEDAEKRGDGTSLAGTFIRLAWHCSGTYSKADGTGGSNGARMRFDPEAKWGANAGLGVARSALE 155          
BLAST of mRNA_H-elongata_contig13729.2624.1 vs. uniprot
Match: A0A7S2LA67_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LA67_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.420e-22
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    4 INQDLVIMMEAEDSKREDGSSIAGTLVRLAWHASGTYSKGDNTGGSNGACMRMSPEKDWGANAGLGVARDFIE 222
            + Q +V ++++   KREDG+S+ GT VRLAWHASGTY+K DN+GGSNG  MR  PE  +GANAGLGVAR  +E
Sbjct:   42 VKQSIVDVIDSNAEKREDGTSLTGTFVRLAWHASGTYAKADNSGGSNGGRMRFDPEASFGANAGLGVARAALE 114          
BLAST of mRNA_H-elongata_contig13729.2624.1 vs. uniprot
Match: A0A836CN41_9STRA (Heme peroxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN41_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.020e-21
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    4 INQDLVIMMEAEDSKREDGSSIAGTLVRLAWHASGTYSKGDNTGGSNGACMRMSPEKDWGANAGLGVARDFIE 222
            + +D+  ++EA+ +KR DG+S+AGTLVRLAWHASGTY K    GGS GA MR  PEK WGANAGLG AR  +E
Sbjct:   70 VKKDIAQVIEADAAKRGDGTSLAGTLVRLAWHASGTYCKSAGNGGSAGATMRFEPEKSWGANAGLGPARAALE 142          
BLAST of mRNA_H-elongata_contig13729.2624.1 vs. uniprot
Match: A0A6S8QI18_9STRA (Hypothetical protein n=9 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8QI18_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.710e-21
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    4 INQDLVIMMEAEDSKREDGSSIAGTLVRLAWHASGTYSKGDNTGGSNGACMRMSPEKDWGANAGLGVARDFIE 222
            I + +  ++E +  KR DG+S+ GT VRLAWH SG+YSK D +GGS+GA MR +PE  WG NAGLG+ARD +E
Sbjct:   44 IRESIATLIETDSEKRGDGTSLTGTFVRLAWHCSGSYSKEDGSGGSDGARMRFNPEASWGGNAGLGIARDALE 116          
BLAST of mRNA_H-elongata_contig13729.2624.1 vs. uniprot
Match: A0A7S2AZ52_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AZ52_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.040e-21
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    4 INQDLVIMMEAEDSKREDGSSIAGTLVRLAWHASGTYSKGDNTGGSNGACMRMSPEKDWGANAGLGVARDFIE 222
            I +D+  M++A+  KR+DG+S+A TLVRLAWH SGTYS  D TGGSNG  MR +PE  WGANAGL  AR F+E
Sbjct:   76 IREDIENMVDADFEKRDDGTSMAPTLVRLAWHCSGTYSCADKTGGSNGCQMRFNPEAGWGANAGLSTARLFLE 148          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13729.2624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU51_ECTSI6.610e-3583.78PEROXIDASE_4 domain-containing protein n=2 Tax=Ect... [more]
A0A7S1XUV8_9STRA2.970e-2565.75Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A482SDA4_9ARCH5.440e-2565.75PEROXIDASE_4 domain-containing protein (Fragment) ... [more]
A0A7S0SWF4_9STRA1.000e-2463.89Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S2HS73_9STRA1.200e-2460.27Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S1YJW7_9STRA2.630e-2363.01Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2LA67_9STRA4.420e-2260.27Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A836CN41_9STRA1.020e-2161.64Heme peroxidase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A6S8QI18_9STRA1.710e-2156.16Hypothetical protein n=9 Tax=Ditylum brightwellii ... [more]
A0A7S2AZ52_9STRA2.040e-2161.64Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13729contigH-elongata_contig13729:313..1237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue2.4e-28
Seed eggNOG ortholog2880.D8LU51
Preferred nameCCP1
KEGG koko:K00428
GOsGO:0000302,GO:0003674,GO:0003824,GO:0004130,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0042737,GO:0042743,GO:0042744,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055114,GO:0070013,GO:0070887,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748
EggNOG free text desc.cytochrome-c peroxidase activity
EggNOG OGs2QR1E@2759,COG0685@1
Ec32 ortholog descriptionHaem peroxidase
Ec32 orthologEc-16_000240.1
EC1.11.1.5
COG Functional cat.E
BiGG ReactioniMM904.YKR066C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929815.4501748-CDS-H-elongata_contig13729:312..4171622929815.4501748-CDS-H-elongata_contig13729:312..417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13729 313..417 -
1691679168.245609-CDS-H-elongata_contig13729:312..4171691679168.245609-CDS-H-elongata_contig13729:312..417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13729 313..417 -
1622929815.4662967-CDS-H-elongata_contig13729:1117..12371622929815.4662967-CDS-H-elongata_contig13729:1117..1237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13729 1118..1237 -
1691679168.2558205-CDS-H-elongata_contig13729:1117..12371691679168.2558205-CDS-H-elongata_contig13729:1117..1237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13729 1118..1237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13729.2624.1prot_H-elongata_contig13729.2624.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13729 313..1237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13729.2624.1

>prot_H-elongata_contig13729.2624.1 ID=prot_H-elongata_contig13729.2624.1|Name=mRNA_H-elongata_contig13729.2624.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MINQDLVIMMEAEDSKREDGSSIAGTLVRLAWHASGTYSKGDNTGGSNGA
CMRMSPEKDWGANAGLGVARDFIEG
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mRNA from alignment at H-elongata_contig13729:313..1237-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13729.2624.1 ID=mRNA_H-elongata_contig13729.2624.1|Name=mRNA_H-elongata_contig13729.2624.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=925bp|location=Sequence derived from alignment at H-elongata_contig13729:313..1237- (Himanthalia elongata Himel1 dioecious)
ATGATTAATCAGGACCTGGTGATTATGATGGAGGCCGAAGACTCCAAGAG GGAAGATGGATCTTCAATCGCAGGCACGCTGGTTCGCCTCGCCTGGCACG CCTCCGGCACTTACTCCAAGGTAACGCCAAGTCTCTATACAAAACTTTGA TGTACTTGCTAACTATATAATGGCTGTACTACTACCAAGACTAATACTAT TGCTATTACTATTACTATATTACTAATACGAATACTAATGCTAATACTAA TACTAATATTCACATTAACATTATATTGATATTAATGCCAATGCTAGGAC TTATATTAATATGTTAATACTAGTATTAATACTAATACTAATACTAGTAT TAATACTAATACCAGTACAATGATGGTGGCAATCAATAAATAACAATGAT GGTGGCAATCAAACCCATTACCAGGTATTTATTTCGGCAGGGAGGTCGCT TCGAAAAAATTGGCACAAAAAAATTGCAGAACCCATCCTACAGTAGCATC TTCTAATGTTAATTTGACAGTCCACGGTGTTTAAGGGTGTTCTATATACC CCTATCAATAGTAGGAAACAGGCGTAAAGCGGAAGAGCTAGATTAAATAA AATTGAATTTGTGGACGCACTTTTTTACCACACGTAGTGTCAATGATACT ATCCTATACTACCCCATAAATTCCTACAGCAACAGCGACACCGAGTGCCG ATCTTTCCCACGTTGCAACGGATTCGGGAGAACCTCGCGCGCTAAGCCGA AATAATTCCAGCACTGATTGATGCTGCTTCCTTTTCCCTCTCTTATCTAA TATATTAATGTATTTTTTAGGGCGATAATACAGGGGGATCGAACGGGGCC TGCATGCGCATGTCCCCGGAAAAAGACTGGGGGGCAAACGCCGGCCTGGG CGTCGCAAGGGATTTCATCGAGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig13729:313..1237-

>mRNA_H-elongata_contig13729.2624.1 ID=mRNA_H-elongata_contig13729.2624.1|Name=mRNA_H-elongata_contig13729.2624.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig13729:313..1237- (Himanthalia elongata Himel1 dioecious)
ATGATTAATCAGGACCTGGTGATTATGATGGAGGCCGAAGACTCCAAGAG
GGAAGATGGATCTTCAATCGCAGGCACGCTGGTTCGCCTCGCCTGGCACG
CCTCCGGCACTTACTCCAAGATGATTAATCAGGACCTGGTGATTATGATG
GAGGCCGAAGACTCCAAGAGGGAAGATGGATCTTCAATCGCAGGCACGCT
GGTTCGCCTCGCCTGGCACGCCTCCGGCACTTACTCCAAGGGCGATAATA
CAGGGGGATCGAACGGGGCCTGCATGCGCATGTCCCCGGAAAAAGACTGG
GGGGCAAACGCCGGCCTGGGCGTCGCAAGGGATTTCATCGAGGGTGGCGA
TAATACAGGGGGATCGAACGGGGCCTGCATGCGCATGTCCCCGGAAAAAG
ACTGGGGGGCAAACGCCGGCCTGGGCGTCGCAAGGGATTTCATCGAGGGT
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