mRNA_H-elongata_contig13726.2621.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13726.2621.1
Unique NamemRNA_H-elongata_contig13726.2621.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13726.2621.1 vs. uniprot
Match: D7FWH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWH3_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 1.190e-36
Identity = 73/126 (57.94%), Postives = 93/126 (73.81%), Query Frame = 1 
Query:    1 GDKQDPDVVMRALNNAVVEAGSSMIGGKENEDALQVLTELLAQEVIDPNVGDEILWTRYGGSPLHQACSLDLPEATRALLEHGASLVQAFNKKTPLEVALTKKGSRCVKVIMDHIEKLEKQARASR 378
            GD  D   V++AL NAV+   SS +   E+  AL++L ELLA++ +DPN GDE LW  YGGSPL+QAC+LDLP   +ALL+HGAS+VQ +  +TPL+ AL +K SRCVKVIM+HIEKLE QAR  R
Sbjct:   42 GDTLDTGRVLQALCNAVI---SSSVDEDEDPHALKLLAELLAEDGVDPNAGDEALWDNYGGSPLYQACALDLPCTAKALLDHGASVVQVYKGQTPLQAALAQKKSRCVKVIMEHIEKLETQAREGR 164
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BLAST of mRNA_H-elongata_contig13726.2621.1 vs. uniprot
Match: A0A835ZIH7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIH7_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 5.490e-14
Identity = 48/124 (38.71%), Postives = 72/124 (58.06%), Query Frame = 1 
Query:   25 VMRALNNAVVEAGSSMIGGKENED---ALQVLTELLAQEVIDPNVGDEILWTRYGGSPLHQACSLDLPEATRALLEHGASLVQAFNKK----------TPLEVALTKKGSRCVKVIMDHIEKLE 357
            +MRAL N VV A +   G ++ +    ++++L ELL  + +DPN G++ +   +GG+PLH A SLD P+   ALLEHGAS+V AF             TPLE+AL +        ++DH+ +LE
Sbjct:   51 IMRALCNCVVSAANGEDGVEDRQPPQHSVELLKELLDMQGVDPNCGNQQILRAHGGTPLHLAVSLDAPKCADALLEHGASVVTAFQXXXXXXXXXXGVTPLELALQQGRGSWRDKLLDHVFRLE 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13726.2621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWH3_ECTSI1.190e-3657.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZIH7_9STRA5.490e-1438.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13726contigH-elongata_contig13726:5823..8190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-26_006620.1
Exons3
Model size1222
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13726.2621.1prot_H-elongata_contig13726.2621.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13726 6637..8163 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929815.2242384-UTR-H-elongata_contig13726:5822..66361622929815.2242384-UTR-H-elongata_contig13726:5822..6636Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13726 5823..6636 -
1691679168.164358-UTR-H-elongata_contig13726:5822..66361691679168.164358-UTR-H-elongata_contig13726:5822..6636Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13726 5823..6636 -
1622929815.28603-UTR-H-elongata_contig13726:8163..81901622929815.28603-UTR-H-elongata_contig13726:8163..8190Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13726 8164..8190 -
1691679168.1970375-UTR-H-elongata_contig13726:8163..81901691679168.1970375-UTR-H-elongata_contig13726:8163..8190Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13726 8164..8190 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929815.241958-CDS-H-elongata_contig13726:6636..67171622929815.241958-CDS-H-elongata_contig13726:6636..6717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13726 6637..6717 -
1691679168.1755207-CDS-H-elongata_contig13726:6636..67171691679168.1755207-CDS-H-elongata_contig13726:6636..6717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13726 6637..6717 -
1622929815.2549043-CDS-H-elongata_contig13726:7135..72881622929815.2549043-CDS-H-elongata_contig13726:7135..7288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13726 7136..7288 -
1691679168.1825764-CDS-H-elongata_contig13726:7135..72881691679168.1825764-CDS-H-elongata_contig13726:7135..7288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13726 7136..7288 -
1622929815.2696195-CDS-H-elongata_contig13726:8016..81631622929815.2696195-CDS-H-elongata_contig13726:8016..8163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13726 8017..8163 -
1691679168.1897943-CDS-H-elongata_contig13726:8016..81631691679168.1897943-CDS-H-elongata_contig13726:8016..8163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13726 8017..8163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13726.2621.1

>prot_H-elongata_contig13726.2621.1 ID=prot_H-elongata_contig13726.2621.1|Name=mRNA_H-elongata_contig13726.2621.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MRALNNAVVEAGSSMIGGKENEDALQVLTELLAQEVIDPNVGDEILWTRY
GGSPLHQACSLDLPEATRALLEHGASLVQAFNKKTPLEVALTKKGSRCVK
VIMDHIEKLEKQARASRRKSSSRCHA*
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mRNA from alignment at H-elongata_contig13726:5823..8190-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13726.2621.1 ID=mRNA_H-elongata_contig13726.2621.1|Name=mRNA_H-elongata_contig13726.2621.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2368bp|location=Sequence derived from alignment at H-elongata_contig13726:5823..8190- (Himanthalia elongata Himel1 dioecious)
GGAGATAAACAAGACCCAGACGTGGTAATGCGGGCACTGAACAACGCGGT
GGTCGAGGCGGGTTCAAGCATGATCGGGGGTAAGGAGAACGAGGACGCCC
TCCAAGTCTTGACGGAGCTACTTGCTCAGGAAGTCATCGACCCTAATGTT
GGAGACGAGATCTTGTGGACCAGGGTAAGATACACGGACGTTACAGTAGT
AATTCATCTAGTACATGTATAATAAACAGTGTGAGAGGTGAAGAGTGAGG
GCGAAGAGCGAAGCAGTCTTACGCGAACAAAATATAATGCACCGCTTTCA
TCAGGGAAACAAGAAACGCGGCGTTCGGTGGCGAGCCGATCACTGCGAGC
GCATCGCTAAGAACTGTCAGCGATCATCAATGAATGTTGACCTTCTACAA
CAAGACGCGCGGGTGTCGTATGGTTACACTCTTCCAGAGCATGACGACAT
TCTTAACCACGTCGTCATCCATGTGAATCGCCGTTTCTCTCTACCTCGCG
TGCCTCAACAAGCTCGTGGCGACGGTGCCGTGTCTTGGTCCTCCTTTCCA
TGCCCGCCCGGGACAAAGGGGGGGTAGCTTTCGCTTGTCGGGCCTTTGCG
GGCGGACGTGTTCTGAAAAGAAACTTAGCACCAAATTGGGGATCGTGTCT
GTCCGTCCCGGTTCGTCCAGAACCACGCCGACACCGTCAGTGGCCCGTCC
TGTGTCCCGCATAAACTGGTCTGCTGCAGGGTTTGAAGTGGGGCTTGCTC
TTGGAGATTGAGAGAGTGGGGGGCTTGTTCCTGGAGGATTATCGAAAGTT
GTGGTGTTGCTCGTGACTTGGACGTGACATAGTAAAGAGCGCGTGTAGGT
CGACGCTTGATTCCCATCCGTCCCGTGTTCGCCACCGTTCGTGATGCCTC
AGTATGGCGGCAGCCCTTTGCATCAGGCCTGCAGCCTGGACCTTCCAGAG
GCGACGAGAGCACTGCTCGAGCACGGAGCCTCGTTGGTTCAAGCTTTCAA
CAAGAAGACGCCCCTGGAGGTGGCATTGACGAAGAAAGGCTCTCGCTGCG
TCAAGGTAAGATGAAAAAAATCGCAGCATTCATACACGCGGCGCAATTAA
ACACTTCGATGCGTTGAACCCAAGGACCGCGGCTTTTTCAGAAAAGTCGG
GAAACCAATGGCTGGCCAAGCAGACATGTCAAAGCTATTATATTTCAGTA
GCGTAATCGTACTCGCTCTTCGAAACACGCGCACGCTTGGCGCCTCCCAG
TACAGACTTCTTCCTTCTCAAATCTAGGCCAAAACTTGTGAAAGGGTAGG
GTGGAGGGGGGGGCTTTCCATGCGCAGGGTGATCAAGTGTGGGGATTTCC
AATAGAGTTCCAAAAGCGTTACCAAGGTGGGAGGCTGCGTCATGTGTCAC
TAATGTGAGCGAGTTTGTGTATGTTTGTGTTCCTCTCTTCCATCTCTGCG
TGCGTTATCGGCGTCGGCGGTAGGTAATCATGGACCACATCGAAAAACTG
GAAAAGCAAGCGCGTGCATCACGGAGGAAAAGCTCTTCGCGGTGCCACGC
CTAGTCCAGAACGTCAGACCGCCACGGATCCATCCCGGGGAGATGCCCAC
GCTGGCGCAGGGTGTCCTTTTTTTTATAGTATCCCTGTGCTAGGCGACGA
AAGATGCCACACGTTCCCCATTTCCTTGAAATGTGCCTCGTACGAGGAGG
AAGGCAGCGTTATCGTGCAGGCGAAGCGCTCTTCCCCGTTCCCTGGCCCG
TTGAACGATGATGCGGTTGGCCATCGCATTTTCCCGTCAGAAGTGGGGGG
CGGCTAAGGTTGCCACTTTGAAATAGGTTTGATCGCACTCTTGAACCAGG
TGTGCGGGCAGGTTAAGCGTTTGAAGCGAGAATCGGGAGCCTTTTCCTCG
ACGAGGGCGTCGACTGTCCCTCGTAAGCGTGGTCACTCTCCGATCGGCCA
GGAATATGTCGCAATTCACGTCGCTCATGCGTTTTTTGGTTGTGTTTGGT
TATCTTCGGCAGTATATCCGTCATAGTCTATAATCCCGACGGTTGCTCCG
CTTAATCTGTAAACTATAAGGAGGCGTTTCTTGTCTGTCGTATGTGGAAG
CTTCTACGCGCCATCCCCGCCTTTTCCGTCGTGTGTGCCGCCGTAACCTC
GACGACGTGAAGGTGGCGATCGGTTCGTGATGCAGCTTTTCTCGAGGCAT
GCCGTGTGCTTGAAACACTCGATATATATATAATCAAGTTTGGCATGGTT
CGAGAGGTTCCATTTTCTAGGTTAAGCTTTTCTCGTATGATATCACAACG
CCATTTTCTAGCGCAGCGCTCGCCACAGTGCTCCCATTTCGTATCTGCCT
ATATTGTTCACTTGTTTT
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Coding sequence (CDS) from alignment at H-elongata_contig13726:5823..8190-

>mRNA_H-elongata_contig13726.2621.1 ID=mRNA_H-elongata_contig13726.2621.1|Name=mRNA_H-elongata_contig13726.2621.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig13726:5823..8190- (Himanthalia elongata Himel1 dioecious)
ATGCGGGCACTGAACAACGCGGTGGTCGAGGCGGGTTCAAGCATGATCGG
GGGTAAGGAGAACGAGGACGCCCTCCAAGTCTTGACGGAGCTACTTGCTC
AGGAAGTCATCGACCCTAATGTTGGAGACGAGATCTTGTGGACCAGGATG
CGGGCACTGAACAACGCGGTGGTCGAGGCGGGTTCAAGCATGATCGGGGG
TAAGGAGAACGAGGACGCCCTCCAAGTCTTGACGGAGCTACTTGCTCAGG
AAGTCATCGACCCTAATGTTGGAGACGAGATCTTGTGGACCAGGTATGGC
GGCAGCCCTTTGCATCAGGCCTGCAGCCTGGACCTTCCAGAGGCGACGAG
AGCACTGCTCGAGCACGGAGCCTCGTTGGTTCAAGCTTTCAACAAGAAGA
CGCCCCTGGAGGTGGCATTGACGAAGAAAGGCTCTCGCTGCGTCAAGTAT
GGCGGCAGCCCTTTGCATCAGGCCTGCAGCCTGGACCTTCCAGAGGCGAC
GAGAGCACTGCTCGAGCACGGAGCCTCGTTGGTTCAAGCTTTCAACAAGA
AGACGCCCCTGGAGGTGGCATTGACGAAGAAAGGCTCTCGCTGCGTCAAG
GTAATCATGGACCACATCGAAAAACTGGAAAAGCAAGCGCGTGCATCACG
GAGGAAAAGCTCTTCGCGGTGCCACGCCTAGGTAATCATGGACCACATCG
AAAAACTGGAAAAGCAAGCGCGTGCATCACGGAGGAAAAGCTCTTCGCGG
TGCCACGCCTAG
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