mRNA_H-elongata_contig13726.2620.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13726.2620.1
Unique NamemRNA_H-elongata_contig13726.2620.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13726.2620.1 vs. uniprot
Match: D7FWH2_ECTSI (Vacuolar protein-sorting-associated protein 36 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWH2_ECTSI)

HSP 1 Score: 415 bits (1067), Expect = 1.600e-141
Identity = 239/325 (73.54%), Postives = 256/325 (78.77%), Query Frame = 1
Query:    1 MLSVKGRDDFLSQVRSALSRKAWVKETAGGIVDRYA-NAGGGHGGPTSNAGIAGILRRQEAARKATTEIATEAFSDLKSLIDKAKEVVAVVERYSAVLEEKQARGTSA---EDAAPGGGGVEERSTREAEDLSNILQGIGIASPVTKASAGTRYHQQLARQLADFLSSPPGGRAAARPLLDRFGGMMTLTDVFSIFNRARGTELVSPGDLLTTAKLLGPSNLGMSLRRFGSGVLVIQADTHSDSAVGARLVKSAGEGAGDGGGSAMWGVGLVATQVARDLRVSVTLAMEHLRTAEAAGLLCRDESVEGTRFYVNRFENFLTRPEE 963
            MLSVKGRDDF S + SAL+RKAWV ETA  ++ R A   G       S AG+AGILRRQEA RKAT EIATEAFSDLKSLIDKAKEVVAVVERYSA L++KQ    SA   +D A  GG      TREAEDLS+ILQ IGIASPVTK SAGTRYHQQLARQLADFLSSPPG RA AR LLD FGGMMTL DVFS+FNRARGTELVSP DLL TA+LLGP+ LGMSLRRF SGVLVIQAD+HSD AV  +LVK+A   A  GGG   WG GLVATQVARDLRVS TLA+EHLRTAE AGLLCRDESVEGTRFY N FE F+   EE
Sbjct:   93 MLSVKGRDDFFSHMESALARKAWVVETAAEVMGRRAAGEGXXXXXRASAAGVAGILRRQEANRKATAEIATEAFSDLKSLIDKAKEVVAVVERYSAALQDKQTAAASAAGDKDEAGDGGDP----TREAEDLSSILQDIGIASPVTKTSAGTRYHQQLARQLADFLSSPPGKRAGARTLLDMFGGMMTLPDVFSVFNRARGTELVSPADLLATARLLGPTKLGMSLRRFASGVLVIQADSHSDQAVSEKLVKAAEAEAAAGGGG--WGDGLVATQVARDLRVSATLAVEHLRTAETAGLLCRDESVEGTRFYANPFERFVKSMEE 411          
BLAST of mRNA_H-elongata_contig13726.2620.1 vs. uniprot
Match: A0A6H5JIP2_9PHAE (Vacuolar protein-sorting-associated protein 36 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIP2_9PHAE)

HSP 1 Score: 277 bits (708), Expect = 3.580e-88
Identity = 159/230 (69.13%), Postives = 173/230 (75.22%), Query Frame = 1
Query:    1 MLSVKGRDDFLSQVRSALSRKAWVKETAGGIVDRYANAGGGHGGPTSN----AGIAGILRRQEAARKATTEIATEAFSDLKSLIDKAKEVVAVVERYSAVLEEKQARGTSAEDAAPGGGGVEERSTREAEDLSNILQGIGIASPVTKASAGTRYHQQLARQLADFLSSPPGGRAAARPLLDRFGGMMTLTDVFSIFNRARGTELVSPGDLLTTAKLLGPSNLGMSLRRFG 678
            MLSVKGRDDF S + SAL+RKAWV ETA  ++ R A   G            AG+AGILRRQEA RKAT EIATEAFSDLKSLIDKAKEVVAVVERYSA L++KQ    + +    G        TREAEDLS+ILQ IGIASPVTK SAGTRYHQQLARQLADFLSSPPG RA AR LLD FGGMMTL DVFS+FNRARGTELVSP DLL TA+LLGP+ LG   +R G
Sbjct:  125 MLSVKGRDDFFSHMESALARKAWVVETAAEVMGRRAAGEGXXXXXXXXXXXXAGVAGILRRQEANRKATAEIATEAFSDLKSLIDKAKEVVAVVERYSAALQDKQTAAAAGDKDEAGD------PTREAEDLSSILQDIGIASPVTKTSAGTRYHQQLARQLADFLSSPPGKRAGARTLLDMFGGMMTLPDVFSVFNRARGTELVSPADLLATARLLGPTKLGGLTQRPG 348          
BLAST of mRNA_H-elongata_contig13726.2620.1 vs. uniprot
Match: A0A485LJU6_9STRA (Vacuolar protein-sorting-associated protein 36 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJU6_9STRA)

HSP 1 Score: 234 bits (597), Expect = 9.510e-72
Identity = 139/311 (44.69%), Postives = 198/311 (63.67%), Query Frame = 1
Query:   16 GRDDFLSQVRSALSRKAWVK-ETAGGIVDRYANAGGGHGGPTSNAGIAGILRRQEAARKATTEIATEAFSDLKSLIDKAKEVVAVVERYSAVLEEKQARGTSAEDAAPGGGGVEERSTREAEDLSNILQGIGIASPVTKASAGTRYHQQLARQLADFLSSPPGGRAAARPLLDRFGGMMTLTDVFSIFNRARGTELVSPGDLLTTAKLLGPSNLGMSLRRFGSGVLVIQADTHSDSAVGARLVKSAGEGAGDGGGSAMWGVGLVATQVARDLRVSVTLAMEHLRTAEAAGLLCRDESVEGTRFYVNRFENF 945
            GRD+F S   ++L+RKAW   +TA  + DR   A        S AGI+GI+ R++  +K TTE+ T++FSDL +L+DKAK+VV ++ERY A          +A++AA GG      +  EA ++  ++  +GIASPVT+ +AG  YHQQLARQLA FL +P          LD +GG+MTL+D++ +FNRARG+EL+SP DL   A L  P +LGM LR+F  G++V+Q+D+H++  V +RL K A + A DG         L +  VAR L++S+ LA+E+L+ AE  G LCRD++ EG  FY NRF NF
Sbjct:   47 GRDEFFSPFEASLARKAWTDTKTASALADRRLQA---RAFDASAAGISGIMNRRQEEQKQTTELTTQSFSDLNALMDKAKDVVGLIERYMA----------TAQNAANGG------NEDEANEMQALMLNMGIASPVTRENAGDAYHQQLARQLASFLKTP----------LDAYGGIMTLSDIYCLFNRARGSELISPDDLYHAAVLQKPLHLGMHLRKFDGGLIVLQSDSHNEDRVASRLEKMA-KAAADGC--------LTSNDVARALKISLPLALEYLKVAEQKGKLCRDDTFEGLHFYPNRFMNF 319          
BLAST of mRNA_H-elongata_contig13726.2620.1 vs. uniprot
Match: W7TG31_9STRA (Vacuolar protein-sorting-associated protein 36 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TG31_9STRA)

HSP 1 Score: 229 bits (585), Expect = 1.870e-68
Identity = 156/339 (46.02%), Postives = 194/339 (57.23%), Query Frame = 1
Query:   16 GRDDFLSQVRSALSRKAWVKETAGGI--------VDRYANAGGGHGGPTSN------------AGIAGILRRQEAARKATTEIATEAFSDLKSLIDKAKEVVAVVERYSAVLEEK-QARGTSAEDAAPGGGGVEERSTREAEDLSNILQGIGIASPVTKASAGTRYHQQLARQLADFLS--SPPGGRAAARPLLDRFGGMMTLTDVFSIFNRARGTELVSPGDLLTTAKLLGPSNLGMSLRRFGSGVLVIQADTHSDSAVGARLVKSAGEGAGDGGGSAMWGVGLVATQVARDLRVSVTLAMEHLRTAEAAGLLCRDESVEGTRFYVNRFENFLTRPEE 963
            GRD+FL QVRS L  + W K     +         D    A      P S             AG+ GILR+QE AR A   +ATEAF+DL++L+ KA+EVV V+ERY+ VL  K +  G      A GG G      RE  +L  +L  +GI++PVT+ SAG+ YHQ+LARQLA FL+  S   G    R LL   GGMMTL DVF +FNRARGT L+SP DLL   + L P  LGM LRRF SGV V++A   S+  VGARL ++  E   DG         L A  VA  LRVS+ LA E L TAEA GLLCRD+SV+GT F+ NRF  ++ +  E
Sbjct:  124 GRDEFLKQVRSLLMMRDWEKPPPVKLRLSPCAIEADGSTPASMPCSSPASPVQTVEPVFTTRLAGVGGILRQQETARAAQDRLATEAFADLEALMSKAREVVGVIERYATVLASKDKGEGEKGGSEAEGGTG------REDAELQGLLLNMGISNPVTRISAGSLYHQELARQLARFLTGGSTSAGALGRRSLLSERGGMMTLHDVFCLFNRARGTALISPEDLLDACEALEPLQLGMRLRRFPSGVSVVEAMDFSEERVGARL-RALAEAEADGS--------LTALDVATHLRVSIALAQEFLGTAEAQGLLCRDQSVQGTLFWPNRFPAWVAQAGE 447          
BLAST of mRNA_H-elongata_contig13726.2620.1 vs. uniprot
Match: A0A6G0WRT1_9STRA (Vacuolar protein-sorting-associated protein 36 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WRT1_9STRA)

HSP 1 Score: 214 bits (546), Expect = 3.040e-63
Identity = 128/312 (41.03%), Postives = 184/312 (58.97%), Query Frame = 1
Query:   16 GRDDFLSQVRSALSRKAWVK-ETAGGIVDRYANAGGGHGGPTSNAGIAGILRRQEAARKATTEIATEAFSDLKSLIDKAKEVVAVVERYSAVLEEKQARGTSAEDAAPGGGGVEERSTREAEDLSNILQGIGIASPVTKASAGTRYHQQLARQLADFLSSPPGGRAAARPLLDRFGGMMTLTDVFSIFNRARGTELVSPGDLLTTAKLLGPSNLGMSLRRFGSGVLVIQADTHSDSAVGARLVKSAGEGAGDGGGSAMWGVGLVATQVARDLRVSVTLAMEHLRTAEAAGLLCRDESVEGTRFYVNRFENFL 948
            GRD+F     ++LSRKAW   +T   + DR            S AGI GI+ R++  +K TTE+ T++FSDL +L+DKAK++V ++ERY A  ++  A   S  D +               ++  ++  +GIASPVT+ +AG  YHQQLARQLA FL  P          L+  GG+MTL+D++ +FNRARG+EL+SP DL   A L  P +LGM LR+F  G++V+Q+D H++  V +RL   A   A DG         L +  VA  L++S+ LA+E+L+ AE  G LCRD++ EG  FY+NRF  F+
Sbjct:  121 GRDEFYGPFEASLSRKAWADTKTTSALADRRLQT---RQFDASAAGIGGIMNRRQEEQKLTTELTTQSFSDLNALMDKAKDMVGLIERYVATAQQNTATPASENDIS---------------EMQVVMLNMGIASPVTRENAGDAYHQQLARQLASFLKQP----------LEAHGGIMTLSDIYCLFNRARGSELISPDDLYHAAALQKPLHLGMHLRKFEGGLIVLQSDLHNEDRVASRLETLAANAA-DGC--------LTSNDVALALKISLPLALEYLKVAEQKGKLCRDDTFEGLNFYLNRFPEFV 395          
BLAST of mRNA_H-elongata_contig13726.2620.1 vs. uniprot
Match: A0A024THV9_9STRA (Vacuolar protein-sorting-associated protein 36 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024THV9_9STRA)

HSP 1 Score: 214 bits (544), Expect = 8.050e-63
Identity = 130/319 (40.75%), Postives = 193/319 (60.50%), Query Frame = 1
Query:   16 GRDDFLSQVRSALSRKAWVKETA-GGIVDRYANAGGGHGGPTSNAGIAGILRRQEAARKATTEIATEAFSDLKSLIDKAKEVVAVVERYSAVLEEKQARGT--SAEDAAPGGGGVEERSTREAEDLSNILQGIGIASPVTKASAGTRYHQQLARQLADFLSSPPGGRAAARPLLDRFGGMMTLTDVFSIFNRARGTELVSPGDLLTTAKLLGPSNLGMSLRRFGSGVLVIQADTHSDSAVGARL---VKSAGEGAGDGGGSAMWGVGLVATQVARDLRVSVTLAMEHLRTAEAAGLLCRDESVEGTRFYVNRFENFLTR 954
            GRD+F S   +A++RKAW    A   + DR            + AGI GI++R++  +K T+E+  ++FSDL +L+DKAK++VA++ERY A  +   A  +  S++ +AP           EA ++  +L  +GIASPVT+ +AG  YH QLARQLA FL  P          LD  GG++TL+D++ +FNRARGTEL+SP DL   A L  P +LGM +R+F  G++V+QAD+H++  V ARL     SA EG             + ++ VAR L++S+ LA+E+L+ AE  G LCRD++ +G  +Y NRF +F+ R
Sbjct:  122 GRDEFFSPFEAAMARKAWADTKAPSALADRRLQQTRQF--DAAAAGIGGIMQRRQEEQKQTSELTAQSFSDLNALMDKAKDMVAIIERYVATSKSTTASSSPDSSDASAP---------NDEATEMHAMLLNMGIASPVTRENAGDAYHVQLARQLASFLKLP----------LDASGGILTLSDIYCLFNRARGTELISPEDLYHAAALQKPLHLGMHMRKFEGGLIVLQADSHNEDRVAARLEALATSASEGC------------ITSSDVARALKISIPLAVEYLKAAEQKGKLCRDDTFDGLLYYSNRFPSFVDR 407          
BLAST of mRNA_H-elongata_contig13726.2620.1 vs. uniprot
Match: A0A662XUA8_9STRA (Vacuolar protein-sorting-associated protein 36 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XUA8_9STRA)

HSP 1 Score: 212 bits (540), Expect = 2.380e-62
Identity = 133/322 (41.30%), Postives = 189/322 (58.70%), Query Frame = 1
Query:   16 GRDDFLSQVRSALSRKAWVKETAGGIVDRYA-----NAGGGHGGPTSNAGIAGILRRQEAARKATTEIATEAFSDLKSLIDKAKEVVAVVERYSAVLEEKQARGTSAEDAAPGGGGVEERSTREAEDLSNILQGIGIASPVTKASAGTRYHQQLARQLADFLSSPPGGRAAARPLLDRFGGMMTLTDVFSIFNRARGTELVSPGDLLTTAKLLGPSNLGMSLRRFGSGVLVIQADTHSDSAVGARLVKSAGEGAGDGGGSAMWGVGLVATQVARDLRVSVTLAMEHLRTAEAAGLLCRDESVEGTRFYVNRFENFLTRPEEE 966
            GRDDF + + ++L RKAW       + DR       NA        ++AGIAGI+RRQ+ A+K TTE+A  AFSDL +L+ KA+++V ++ERY    +  QA G  A+D      GVE     E   LS+++  +GI SPVT+ ++G  Y++QLARQLA++LS            + R GG+MTL+D++ +FNRARG ELVSP DL   A+L     LG S+R+F  G+LV+Q D+H +  V  RL K A +       S+ +   + +T V+ +L  S  LA E+L+ AE  G LCRD++ EGT FY N F  F+   E E
Sbjct:  111 GRDDFYNPLEASLKRKAWKDTQPSHLADRRLVKRQFNA--------ADAGIAGIMRRQQEAQKETTELAVTAFSDLTNLMMKARDMVGLIERYVDTQKAGQAAGEEAQD------GVETSREEEINKLSSLMLDMGITSPVTRENSGAAYYEQLARQLAEYLSDH----------MPRNGGIMTLSDIYCMFNRARGVELVSPDDLYHAARLQRKLKLGYSVRKFDGGLLVLQTDSHREDKVADRLAKMAHK------SSSGY---ITSTDVSVELHTSFPLAWEYLKVAEELGKLCRDDTFEGTNFYPNEFARFVHEAELE 399          
BLAST of mRNA_H-elongata_contig13726.2620.1 vs. uniprot
Match: A0A7S2SSI3_9STRA (Vacuolar protein-sorting-associated protein 36 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSI3_9STRA)

HSP 1 Score: 211 bits (536), Expect = 7.610e-62
Identity = 135/309 (43.69%), Postives = 182/309 (58.90%), Query Frame = 1
Query:   28 FLSQVRSALSRKAWVKETAGGIVDRYANAGGGHGG--PTSNAGIAGILRRQEAARKATTEIATEAFSDLKSLIDKAKEVVAVVERYSAVLEEKQARGTSAEDAAPGGGGVEERSTREAEDLSNILQGIGIASPVTKASAGTRYHQQLARQLADFLSSPPGGRAAARPLLDRFGGMMTLTDVFSIFNRARGTELVSPGDLLTTAKLLGPSNLGMSLRRFGSGVLVIQADTHSDSAVGARLVKSAGEGAGDGGGSAMWGVGLVATQVARDLRVSVTLAMEHLRTAEAAGLLCRDESVEGTRFYVNRFENFL 948
             L  V+ AL RKAW++E A         AG   GG    S+AGI+G++R+QE  ++ T  +AT+AF+D++ L+ +A  VV +++RY A +        S E A+       E    EAE + ++   IGI+SPVT++SAG+ +HQQLARQLADFL    GG       L R GG++TL D++ IFNRARG  LVSP DLL +AKLLGP  L M  R FGSGV+V++AD H D+ +  RL   A E              L +  V+  LR+ V LA EHL+ AE  G LCRDE   G RFY N F+++L
Sbjct:  111 ILDAVQKALERKAWLQEEA-------TAAGPAKGGRVTASSAGISGLMRKQERDKRETGRLATDAFADMQGLMKQAVAVVDIMQRYKAQI--------STESASEAATTTSEEQESEAE-MGDLFLNIGISSPVTRSSAGSHFHQQLARQLADFLI---GGER-----LSRAGGVLTLPDIYCIFNRARGLALVSPDDLLASAKLLGPLGLSMHCREFGSGVIVVEADDHDDALLSKRLAAIAKE-----------HTHLTSIHVSTILRIPVPLAREHLKIAEERGELCRDEGNGGVRFYPNYFKDYL 384          
BLAST of mRNA_H-elongata_contig13726.2620.1 vs. uniprot
Match: A0A1V9YIS6_9STRA (Vacuolar protein-sorting-associated protein 36 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIS6_9STRA)

HSP 1 Score: 209 bits (532), Expect = 3.250e-61
Identity = 125/312 (40.06%), Postives = 189/312 (60.58%), Query Frame = 1
Query:   16 GRDDFLSQVRSALSRKAWVK-ETAGGIVDRYANAGGGHGGPTSNAGIAGILRRQEAARKATTEIATEAFSDLKSLIDKAKEVVAVVERYSAVLEEKQARGTSAEDAAPGGGGVEERSTREAEDLSNILQGIGIASPVTKASAGTRYHQQLARQLADFLSSPPGGRAAARPLLDRFGGMMTLTDVFSIFNRARGTELVSPGDLLTTAKLLGPSNLGMSLRRFGSGVLVIQADTHSDSAVGARLVKSAGEGAGDGGGSAMWGVGLVATQVARDLRVSVTLAMEHLRTAEAAGLLCRDESVEGTRFYVNRFENFL 948
            GRD+F + + ++L R+AW   ++   + DR   A        + AGI GI++R++  +K T+E+ T++FSDL +L+DKAK++V ++ERY A      A   +A+               EA  ++ +L  +GIASPVT+ +AG  +HQQLARQLA+FL +P          + + GG+MTL+DV+ +FNRARG+ LVSP DL T A L  P +LG+ +R+F  G++V+QAD+H++  V  RL   A + A DG         + ++ VA  L +S++LA E+L+ AE  G LCRD++ EG  FY NRF  FL
Sbjct:  118 GRDEFFNPLETSLCRRAWADTKSVSALADRRLQA---RHFDATQAGIGGIIQRRQEEQKQTSELTTQSFSDLNALMDKAKDMVGLIERYVATANSGAATDATAD---------------EATQMNALLLNMGIASPVTRENAGDAFHQQLARQLAEFLHAP----------MAQHGGIMTLSDVYCLFNRARGSALVSPDDLYTAAMLQKPLHLGLHVRKFDGGLIVLQADSHNEEHVAVRLEALARQ-AKDGC--------ITSSDVAAALHISISLAREYLKVAEQRGKLCRDDTFEGLNFYPNRFAEFL 392          
BLAST of mRNA_H-elongata_contig13726.2620.1 vs. uniprot
Match: W4GGE2_9STRA (Vacuolar protein-sorting-associated protein 36 n=13 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGE2_9STRA)

HSP 1 Score: 209 bits (533), Expect = 4.160e-61
Identity = 126/312 (40.38%), Postives = 189/312 (60.58%), Query Frame = 1
Query:   16 GRDDFLSQVRSALSRKAWVKETA-GGIVDRYANAGGGHGGPTSNAGIAGILRRQEAARKATTEIATEAFSDLKSLIDKAKEVVAVVERYSAVLEEKQARGTSAEDAAPGGGGVEERSTREAEDLSNILQGIGIASPVTKASAGTRYHQQLARQLADFLSSPPGGRAAARPLLDRFGGMMTLTDVFSIFNRARGTELVSPGDLLTTAKLLGPSNLGMSLRRFGSGVLVIQADTHSDSAVGARLVKSAGEGAGDGGGSAMWGVGLVATQVARDLRVSVTLAMEHLRTAEAAGLLCRDESVEGTRFYVNRFENFL 948
            GRD+F S   +A++RKAW    A   + DR            S AGI GI++R++  +K T+E+ T++FSDL +L+DKAK++V ++ERY  V     A    A DAAP        ST +  ++ ++L  +GIASPVT+ ++G  YH QLARQLA F+  P          LD  GG++TL+D++ +FNRARG+EL+SP DL   A L  P +LG+ +R+F  G++V+QAD+H++  V  RL ++    A DG         + +  V+R  ++S+ LA+E+L+ AE  G LCRD++ EG  FY NRF +F+
Sbjct:  133 GRDEFFSPFEAAMARKAWADTKAPSALADRRLQQTRQF--DASAAGIGGIMQRRQDEQKHTSELTTQSFSDLHALMDKAKDMVGLIERY--VATSNAATSADAADAAP--------STDDVSEMQSVLLNMGIASPVTRENSGDAYHVQLARQLASFVKLP----------LDASGGILTLSDIYCLFNRARGSELISPEDLYHAAALQKPLHLGIHMRKFDGGLIVLQADSHNEDRVATRL-ETLATAAADGC--------VTSADVSRAFKISLPLAVEYLKVAEQKGKLCRDDTFEGLLFYPNRFPSFV 413          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13726.2620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWH2_ECTSI1.600e-14173.54Vacuolar protein-sorting-associated protein 36 n=1... [more]
A0A6H5JIP2_9PHAE3.580e-8869.13Vacuolar protein-sorting-associated protein 36 n=1... [more]
A0A485LJU6_9STRA9.510e-7244.69Vacuolar protein-sorting-associated protein 36 n=1... [more]
W7TG31_9STRA1.870e-6846.02Vacuolar protein-sorting-associated protein 36 n=2... [more]
A0A6G0WRT1_9STRA3.040e-6341.03Vacuolar protein-sorting-associated protein 36 n=1... [more]
A0A024THV9_9STRA8.050e-6340.75Vacuolar protein-sorting-associated protein 36 n=2... [more]
A0A662XUA8_9STRA2.380e-6241.30Vacuolar protein-sorting-associated protein 36 n=1... [more]
A0A7S2SSI3_9STRA7.610e-6243.69Vacuolar protein-sorting-associated protein 36 n=1... [more]
A0A1V9YIS6_9STRA3.250e-6140.06Vacuolar protein-sorting-associated protein 36 n=1... [more]
W4GGE2_9STRA4.160e-6140.38Vacuolar protein-sorting-associated protein 36 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13726contigH-elongata_contig13726:3655..4629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score419.1
Seed ortholog evalue1.9e-114
Seed eggNOG ortholog2880.D7FWH2
Preferred nameVPS36
KEGG rclassRC00010,RC00100,RC00950,RC01025
KEGG koko:K01426,ko:K12190
KEGG ReactionR02540,R03096,R03180,R03909,R05551,R05590
KEGG Pathwayko00330,ko00360,ko00380,ko00627,ko00643,ko01120,ko04144,map00330,map00360,map00380,map00627,map00643,map01120,map04144
KEGG ModuleM00410
GOsGO:0000003,GO:0000323,GO:0000429,GO:0000430,GO:0000433,GO:0000578,GO:0000814,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005770,GO:0005773,GO:0005829,GO:0006355,GO:0006357,GO:0006403,GO:0006508,GO:0006511,GO:0006605,GO:0006623,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0006914,GO:0006996,GO:0007032,GO:0007034,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007350,GO:0007351,GO:0007389,GO:0007584,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008298,GO:0008358,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009605,GO:0009790,GO:0009798,GO:0009880,GO:0009889,GO:0009890,GO:0009892,GO:0009948,GO:0009952,GO:0009966,GO:0009987,GO:0009991,GO:0009994,GO:0010008,GO:0010256,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010941,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0019219,GO:0019222,GO:0019538,GO:0019941,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0030154,GO:0030163,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031902,GO:0031982,GO:0032182,GO:0032258,GO:0032501,GO:0032502,GO:0032504,GO:0032507,GO:0032509,GO:0032511,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034613,GO:0035282,GO:0036257,GO:0036258,GO:0036452,GO:0036477,GO:0042221,GO:0042493,GO:0042886,GO:0042981,GO:0043025,GO:0043067,GO:0043130,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043328,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045013,GO:0045014,GO:0045053,GO:0045184,GO:0045185,GO:0045324,GO:0045450,GO:0045892,GO:0045934,GO:0045990,GO:0046015,GO:0046618,GO:0046907,GO:0048468,GO:0048469,GO:0048477,GO:0048519,GO:0048523,GO:0048583,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051235,GO:0051252,GO:0051253,GO:0051503,GO:0051603,GO:0051641,GO:0051649,GO:0051651,GO:0051704,GO:0051716,GO:0060255,GO:0060810,GO:0060811,GO:0061919,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0070925,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0080090,GO:0097159,GO:0097458,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1901264,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:1904669,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
EggNOG OGsKOG2760@1,KOG2760@2759
EC3.5.1.4
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWinged helix-turn-helix DNA-binding domain
Ec32 orthologEc-26_006630.1
Exons1
Model size975
Cds size975
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929815.1678581-CDS-H-elongata_contig13726:3654..46291622929815.1678581-CDS-H-elongata_contig13726:3654..4629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13726 3655..4629 +
1691679168.1511478-CDS-H-elongata_contig13726:3654..46291691679168.1511478-CDS-H-elongata_contig13726:3654..4629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13726 3655..4629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13726.2620.1prot_H-elongata_contig13726.2620.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13726 3655..4629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13726.2620.1

>prot_H-elongata_contig13726.2620.1 ID=prot_H-elongata_contig13726.2620.1|Name=mRNA_H-elongata_contig13726.2620.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=325bp
MLSVKGRDDFLSQVRSALSRKAWVKETAGGIVDRYANAGGGHGGPTSNAG
IAGILRRQEAARKATTEIATEAFSDLKSLIDKAKEVVAVVERYSAVLEEK
QARGTSAEDAAPGGGGVEERSTREAEDLSNILQGIGIASPVTKASAGTRY
HQQLARQLADFLSSPPGGRAAARPLLDRFGGMMTLTDVFSIFNRARGTEL
VSPGDLLTTAKLLGPSNLGMSLRRFGSGVLVIQADTHSDSAVGARLVKSA
GEGAGDGGGSAMWGVGLVATQVARDLRVSVTLAMEHLRTAEAAGLLCRDE
SVEGTRFYVNRFENFLTRPEEEKI*
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mRNA from alignment at H-elongata_contig13726:3655..4629+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13726.2620.1 ID=mRNA_H-elongata_contig13726.2620.1|Name=mRNA_H-elongata_contig13726.2620.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=975bp|location=Sequence derived from alignment at H-elongata_contig13726:3655..4629+ (Himanthalia elongata Himel1 dioecious)
ATGCTATCGGTCAAGGGCAGGGACGATTTTTTATCGCAAGTGCGATCTGC CCTGTCTCGCAAGGCGTGGGTCAAGGAGACGGCGGGGGGAATCGTGGATA GGTACGCGAACGCCGGGGGAGGGCACGGTGGCCCGACGTCCAACGCCGGA ATCGCCGGCATCCTCCGCCGACAGGAGGCTGCTCGGAAGGCGACGACCGA GATCGCAACGGAGGCCTTCTCCGACCTGAAGAGCCTCATCGACAAAGCGA AAGAGGTGGTGGCCGTTGTCGAGCGCTATTCCGCCGTGCTTGAGGAAAAG CAGGCCCGGGGCACATCGGCAGAAGATGCCGCACCAGGTGGCGGGGGGGT AGAAGAAAGATCCACTCGGGAGGCAGAAGACTTGAGCAATATCCTGCAGG GCATCGGTATCGCAAGCCCTGTGACGAAAGCGAGCGCGGGCACGCGCTAT CACCAGCAGCTCGCTCGCCAGCTCGCGGACTTCCTGTCTTCTCCGCCAGG AGGAAGGGCCGCCGCCCGCCCGCTGCTGGACCGCTTCGGCGGAATGATGA CTCTGACGGACGTGTTCTCCATATTCAACCGGGCGCGCGGGACGGAGCTC GTGTCTCCGGGAGATCTGCTCACCACGGCAAAGCTTCTGGGGCCGTCTAA CCTCGGAATGTCGTTGCGAAGATTCGGTTCCGGAGTGTTGGTCATCCAGG CCGACACGCACAGCGACAGTGCCGTAGGCGCGAGGCTTGTCAAGTCGGCG GGGGAAGGTGCGGGTGACGGGGGCGGGTCCGCCATGTGGGGGGTTGGACT CGTGGCGACGCAGGTGGCACGAGACTTGCGGGTGTCTGTGACGCTGGCCA TGGAACATTTGCGGACGGCGGAGGCAGCCGGCCTGTTGTGCAGGGACGAG AGCGTAGAGGGAACGCGGTTTTACGTAAACCGTTTCGAGAATTTCCTCAC GCGACCGGAGGAAGAAAAAATATGA
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Coding sequence (CDS) from alignment at H-elongata_contig13726:3655..4629+

>mRNA_H-elongata_contig13726.2620.1 ID=mRNA_H-elongata_contig13726.2620.1|Name=mRNA_H-elongata_contig13726.2620.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1950bp|location=Sequence derived from alignment at H-elongata_contig13726:3655..4629+ (Himanthalia elongata Himel1 dioecious)
ATGCTATCGGTCAAGGGCAGGGACGATTTTTTATCGCAAGTGCGATCTGC
CCTGTCTCGCAAGGCGTGGGTCAAGGAGACGGCGGGGGGAATCGTGGATA
GGTACGCGAACGCCGGGGGAGGGCACGGTGGCCCGACGTCCAACGCCGGA
ATCGCCGGCATCCTCCGCCGACAGGAGGCTGCTCGGAAGGCGACGACCGA
GATCGCAACGGAGGCCTTCTCCGACCTGAAGAGCCTCATCGACAAAGCGA
AAGAGGTGGTGGCCGTTGTCGAGCGCTATTCCGCCGTGCTTGAGGAAAAG
CAGGCCCGGGGCACATCGGCAGAAGATGCCGCACCAGGTGGCGGGGGGGT
AGAAGAAAGATCCACTCGGGAGGCAGAAGACTTGAGCAATATCCTGCAGG
GCATCGGTATCGCAAGCCCTGTGACGAAAGCGAGCGCGGGCACGCGCTAT
CACCAGCAGCTCGCTCGCCAGCTCGCGGACTTCCTGTCTTCTCCGCCAGG
AGGAAGGGCCGCCGCCCGCCCGCTGCTGGACCGCTTCGGCGGAATGATGA
CTCTGACGGACGTGTTCTCCATATTCAACCGGGCGCGCGGGACGGAGCTC
GTGTCTCCGGGAGATCTGCTCACCACGGCAAAGCTTCTGGGGCCGTCTAA
CCTCGGAATGTCGTTGCGAAGATTCGGTTCCGGAGTGTTGGTCATCCAGG
CCGACACGCACAGCGACAGTGCCGTAGGCGCGAGGCTTGTCAAGTCGGCG
GGGGAAGGTGCGGGTGACGGGGGCGGGTCCGCCATGTGGGGGGTTGGACT
CGTGGCGACGCAGGTGGCACGAGACTTGCGGGTGTCTGTGACGCTGGCCA
TGGAACATTTGCGGACGGCGGAGGCAGCCGGCCTGTTGTGCAGGGACGAG
AGCGTAGAGGGAACGCGGTTTTACGTAAACCGTTTCGAGAATTTCCTCAC
GCGACCGGAGGAAGAAAAAATATGAATGCTATCGGTCAAGGGCAGGGACG
ATTTTTTATCGCAAGTGCGATCTGCCCTGTCTCGCAAGGCGTGGGTCAAG
GAGACGGCGGGGGGAATCGTGGATAGGTACGCGAACGCCGGGGGAGGGCA
CGGTGGCCCGACGTCCAACGCCGGAATCGCCGGCATCCTCCGCCGACAGG
AGGCTGCTCGGAAGGCGACGACCGAGATCGCAACGGAGGCCTTCTCCGAC
CTGAAGAGCCTCATCGACAAAGCGAAAGAGGTGGTGGCCGTTGTCGAGCG
CTATTCCGCCGTGCTTGAGGAAAAGCAGGCCCGGGGCACATCGGCAGAAG
ATGCCGCACCAGGTGGCGGGGGGGTAGAAGAAAGATCCACTCGGGAGGCA
GAAGACTTGAGCAATATCCTGCAGGGCATCGGTATCGCAAGCCCTGTGAC
GAAAGCGAGCGCGGGCACGCGCTATCACCAGCAGCTCGCTCGCCAGCTCG
CGGACTTCCTGTCTTCTCCGCCAGGAGGAAGGGCCGCCGCCCGCCCGCTG
CTGGACCGCTTCGGCGGAATGATGACTCTGACGGACGTGTTCTCCATATT
CAACCGGGCGCGCGGGACGGAGCTCGTGTCTCCGGGAGATCTGCTCACCA
CGGCAAAGCTTCTGGGGCCGTCTAACCTCGGAATGTCGTTGCGAAGATTC
GGTTCCGGAGTGTTGGTCATCCAGGCCGACACGCACAGCGACAGTGCCGT
AGGCGCGAGGCTTGTCAAGTCGGCGGGGGAAGGTGCGGGTGACGGGGGCG
GGTCCGCCATGTGGGGGGTTGGACTCGTGGCGACGCAGGTGGCACGAGAC
TTGCGGGTGTCTGTGACGCTGGCCATGGAACATTTGCGGACGGCGGAGGC
AGCCGGCCTGTTGTGCAGGGACGAGAGCGTAGAGGGAACGCGGTTTTACG
TAAACCGTTTCGAGAATTTCCTCACGCGACCGGAGGAAGAAAAAATATGA
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