mRNA_H-elongata_contig137195.2617.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137195.2617.1
Unique NamemRNA_H-elongata_contig137195.2617.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig137195.2617.1 vs. uniprot
Match: D7G522_ECTSI (MYND-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G522_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.550e-30
Identity = 59/74 (79.73%), Postives = 68/74 (91.89%), Query Frame = 3 
Query:   12 IMVNHNEFGVTEEEFQELGNDEGRVQELLLDKMKRFISKHPEAAGHDSIKTLTALAVDELLLNGSLENARLLYQ 233
            +MVNHNEFG+TEEEF+E GNDE  VQ+LLL KMK FI+KHPEAAG D+IKTLTALAVDELLLNG+LENARL++Q
Sbjct:    1 MMVNHNEFGITEEEFEEHGNDEAAVQDLLLQKMKNFITKHPEAAGDDAIKTLTALAVDELLLNGNLENARLVFQ 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137195.2617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G522_ECTSI1.550e-3079.73MYND-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137195contigH-elongata_contig137195:138..818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size233
Cds size219
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137195.2617.1prot_H-elongata_contig137195.2617.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137195 138..804 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929814.9402342-CDS-H-elongata_contig137195:137..2331622929814.9402342-CDS-H-elongata_contig137195:137..233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137195 138..233 -
1691679168.079517-CDS-H-elongata_contig137195:137..2331691679168.079517-CDS-H-elongata_contig137195:137..233Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137195 138..233 -
1622929814.9624522-CDS-H-elongata_contig137195:681..8041622929814.9624522-CDS-H-elongata_contig137195:681..804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137195 682..804 -
1691679168.0889547-CDS-H-elongata_contig137195:681..8041691679168.0889547-CDS-H-elongata_contig137195:681..804Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137195 682..804 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929814.9781466-UTR-H-elongata_contig137195:804..8181622929814.9781466-UTR-H-elongata_contig137195:804..818Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig137195 805..818 -
1691679168.0979238-UTR-H-elongata_contig137195:804..8181691679168.0979238-UTR-H-elongata_contig137195:804..818Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig137195 805..818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137195.2617.1

>prot_H-elongata_contig137195.2617.1 ID=prot_H-elongata_contig137195.2617.1|Name=mRNA_H-elongata_contig137195.2617.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MVNHNEFGVTEEEFQELGNDEGRVQELLLDKMKRFISKHPEAAGHDSIKT
LTALAVDELLLNGSLENARLLYQ
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mRNA from alignment at H-elongata_contig137195:138..818-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137195.2617.1 ID=mRNA_H-elongata_contig137195.2617.1|Name=mRNA_H-elongata_contig137195.2617.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=681bp|location=Sequence derived from alignment at H-elongata_contig137195:138..818- (Himanthalia elongata Himel1 dioecious)
AGTGTATCAACATCATGGTGAACCACAACGAGTTCGGCGTGACGGAGGAG
GAGTTCCAAGAGCTCGGGAACGATGAGGGTCGGGTGCAAGAGCTGTTACT
CGACAAGATGAAGCGTTTCATCTCCAAGCACCCAGAGGTATATCCAATGC
TGATGCTGATGCTGTGCTGCACAAGAGGGTATTTAATGATGTGCGCTGCA
CTGCTTTGAACCCAAAAGGAACCGTTATTCTGTTATATTGCTTGGCGTGT
TGGGAGGGGGGGGAAGGGGGGACAGGGATTGTGTACCGACTCTCTTATTG
TATTTTTATTTATTTTTGTCCACGCTAGCCTTAAAGGCTATTCATTATTG
TCTTAGTTCCTATCCTGCTTGCAGTTTTATTTCCTACCGTATGCTCTTAT
CCTTACGGCCCGGTATGATTTATTTTATATACTGGTACTCTGTATTTGTG
TATGTGTGTATTTATTAAATTGCACATAACCGCGCAATCCGGCCCTATTG
TTCTAGTCATTCCATGCCACTCTATGAATTTGATTTTATTTGATTTGATT
TTTGATTTTTACCCTCTTTTTTGTCTTCCTTTTAGGCTGCTGGTCATGAC
TCAATCAAGACGCTGACCGCTCTTGCGGTGGACGAGCTACTGCTCAACGG
CAGCCTCGAGAACGCCCGCCTGCTATACCAG
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Coding sequence (CDS) from alignment at H-elongata_contig137195:138..818-

>mRNA_H-elongata_contig137195.2617.1 ID=mRNA_H-elongata_contig137195.2617.1|Name=mRNA_H-elongata_contig137195.2617.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig137195:138..818- (Himanthalia elongata Himel1 dioecious)
ATGGTGAACCACAACGAGTTCGGCGTGACGGAGGAGGAGTTCCAAGAGCT
CGGGAACGATGAGGGTCGGGTGCAAGAGCTGTTACTCGACAAGATGAAGC
GTTTCATCTCCAAGCACCCAGAGATGGTGAACCACAACGAGTTCGGCGTG
ACGGAGGAGGAGTTCCAAGAGCTCGGGAACGATGAGGGTCGGGTGCAAGA
GCTGTTACTCGACAAGATGAAGCGTTTCATCTCCAAGCACCCAGAGGCTG
CTGGTCATGACTCAATCAAGACGCTGACCGCTCTTGCGGTGGACGAGCTA
CTGCTCAACGGCAGCCTCGAGAACGCCCGCCTGCTATACCAGGCTGCTGG
TCATGACTCAATCAAGACGCTGACCGCTCTTGCGGTGGACGAGCTACTGC
TCAACGGCAGCCTCGAGAACGCCCGCCTGCTATACCAG
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