mRNA_H-elongata_contig137176.2616.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137176.2616.1
Unique NamemRNA_H-elongata_contig137176.2616.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Match: D8LU27_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU27_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.300e-28
Identity = 60/112 (53.57%), Postives = 72/112 (64.29%), Query Frame = 1
Query:   49 RCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRETIVIMMTAPGWRGEGNSVNSYPGAGTTLVERITPNTVVGQMELDMGPSMCIFWCACALGALVTGRPNDSVS 384
            RCRLSASPATGLVGMQENAFLSDFFGC+GFLPLT+R H+R  +V MM     + +  + +  P  G             G  +L  GPS C FWCA  +GALV GRP +SV+
Sbjct:   95 RCRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTRSHVRGAMVRMMAHSAAQHQLRARHDTPDQGQFGAIFSEDGITTGN-QLSTGPSACTFWCAVGVGALVKGRPAESVT 205          
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Match: D8LU09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU09_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.120e-28
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   49 RCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRETIVIMMTAPGWRGEGNSVNSYPGAGTTLVERITPNTVVGQMELDMGPSMCIFWCACALGALVTGRPNDSVS 384
            R RL+ASPATGLVGMQENAFLSDFFGC+GF+PLTS  HIRET+V +M +P    +     ++ G G+ +  R   N    + +L M PS C FWCA ALGAL  G P +SV+
Sbjct:    6 RFRLTASPATGLVGMQENAFLSDFFGCVGFVPLTSHSHIRETMVKIMASPAPLQQSAIGGAFGGVGSMVRARCW-NKASEKPQLPMDPSTCTFWCAIALGALAKGCPVESVA 116          
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Match: D8LCV1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV1_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 7.800e-28
Identity = 61/116 (52.59%), Postives = 73/116 (62.93%), Query Frame = 1
Query:   49 RCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRETIVIMMTAPGWRGEGNSVNSYPGAGTTLVERITP----NTVVGQMELDMGPSMCIFWCACALGALVTGRPNDSVS 384
            RCRLSASPATGLVGMQENAFLSDFFGC+GFLPLT+  HIRET+V +M  P    + +        G    E + P    +    + +  M PS C FWCA ALGAL  G P +SV+
Sbjct:   10 RCRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTPSHIRETMVTIML-PRASSQQSVFGDDCDEGGHYFEAVAPGGDLSKTSARNQFPMDPSACTFWCAVALGALAKGSPIESVT 124          
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Match: D8LCV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV4_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.880e-27
Identity = 64/120 (53.33%), Postives = 76/120 (63.33%), Query Frame = 1
Query:   49 RCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRETIVIMMTAPGWRGEGNSVNSYPGAGTT----LVERITPNTVVGQM----ELDMGPSMCIFWCACALGALVTGRPNDSVS 384
            RCRLSASPATGLV MQEN FLSDFFGCIGFLPLT+   IRET+V +M  P      +S  S  G G+       E + P   + ++    +L M PS C FWCA ALGALV G P +SV+
Sbjct:    6 RCRLSASPATGLVEMQENTFLSDFFGCIGFLPLTTPSQIRETMVKIMVPPA-----SSQQSVFGDGSDKRGHYFEAVAPGGDLSKISAGSQLPMDPSACTFWCAVALGALVKGSPIESVT 120          
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Match: D8LU29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU29_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 3.360e-27
Identity = 59/111 (53.15%), Postives = 70/111 (63.06%), Query Frame = 1
Query:   49 RCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRETIVIMMTAPGWRGEGNSVNSYPGAGTTLVERITPNTVVGQMELDMGPSMCIFWCACALGALVTGRPNDSV 381
            R R SASPATGLVGMQENA LSDFFGCIGF+PLT+R HIR  +V MMT+     +  + +  P  G       T + +    +L  GPS C FWCA  LGALV G P +SV
Sbjct:   25 RFRWSASPATGLVGMQENACLSDFFGCIGFMPLTTRSHIRGAMVRMMTSSTPHHQPGAPHDSPAQGH-FGSIFTEDGITPGNQLSTGPSACTFWCAVGLGALVKGSPVESV 134          
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Match: A0A6H5JYW4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.340e-26
Identity = 61/112 (54.46%), Postives = 73/112 (65.18%), Query Frame = 1
Query:   49 RCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRETIVIMMTAPGWRGEGNSVNSYPGAGTTLVERITPNTVVGQMELDMGPSMCIFWCACALGALVTGRPNDSVS 384
            R RLSASPATGLVGMQENAFLSDFFGC+GF+PLTS  HIRET+V +M +P    +     +    GT +V     N    + +L M  S C FWCA ALGAL  G P +SV+
Sbjct:  110 RFRLSASPATGLVGMQENAFLSDFFGCVGFVPLTSHSHIRETMVRIMASPAPLQQSAIGGACSEVGT-MVRAPCWNEASERNQLPMDASTCTFWCAIALGALAKGSPVESVA 220          
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Match: D8LU08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU08_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.210e-25
Identity = 60/104 (57.69%), Postives = 70/104 (67.31%), Query Frame = 1
Query:   49 RCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRETIVIMMTAPGWRGEGNSVNSYPGAGTTLVERITPNTVVGQMELDMGPSMCIFWCACALGALVT 360
            R RLSASPA GLVGMQEN FL+DFFGC+GFLPLT++ HIRET+V MM +P  R +         AGT   E         ++ L MGPS CIFWCA ALGALV+
Sbjct:  107 RFRLSASPAIGLVGMQENTFLTDFFGCVGFLPLTTQRHIRETMVKMMASPASRRQS-------AAGTDCDE-------APELNLLMGPSTCIFWCAVALGALVS 196          
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Match: A0A6H5K8E7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8E7_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.200e-25
Identity = 62/116 (53.45%), Postives = 72/116 (62.07%), Query Frame = 1
Query:   49 RCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRETIVIMM---TAPGWRGEGNSVNSYPGAGTTLVER-ITPNTVVGQMELDMGPSMCIFWCACALGALVTGRPNDSVS 384
            R +LSASPATGLVGMQENAFLSDFFGC+GF+P TSR HIR  +V MM   TA    G  ++       G T  E  ITP       +L  GPS C FWCA  +GAL  G P +SV+
Sbjct:   98 RLKLSASPATGLVGMQENAFLSDFFGCVGFMPFTSRSHIRGAMVRMMARSTAQHQPGARHNSPEQSQFGDTFTEDGITPGN-----QLLTGPSCCTFWCAVGMGALAKGSPVESVA 208          
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Match: A0A6H5JBJ1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.450e-24
Identity = 63/123 (51.22%), Postives = 72/123 (58.54%), Query Frame = 1
Query:   49 RCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRETIVIMMT---APGWRGEGNSVNSYPGAGTTLVERI-TPNTVVGQMELDMGPSMCIFWCACALGALVTGRPNDSVSGGRAFKR 405
            R RLSASPATGLVGMQENAFLSDFFGC+GFLPLT+  HIR  +V MMT   AP   G      SY        + I T + +    +L  GPS C FWCA  +GALV G P + V       R
Sbjct:   98 RFRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLSTAPHQLGA-----SYDSPEQCQFDAILTEDGITTGSQLSTGPSACTFWCAVGVGALVNGSPVELVGNYSGLAR 215          
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Match: D8LU18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU18_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 4.250e-24
Identity = 54/112 (48.21%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   49 RCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRETIVIMMTAPGWRGEGNSVNSYPGAGTTLVERITPNTVVGQMELDMGPSMCIFWCACALGALVTGRPNDSVS 384
            R RLSASPATGLVGMQENAFL+DFFGC+G LPLT+  H+R  +V MMT    + +  +++  P  G             G  +L  GPS C FWCA  +GA++ GR  +SV+
Sbjct:   60 RFRLSASPATGLVGMQENAFLNDFFGCVGLLPLTTPSHVRGAMVRMMTRSTAQQQLGALHDSPEQGQFGAIFAEDGITTGN-QLLTGPSCCTFWCAVGVGAIMKGRTAESVA 170          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU27_ECTSI1.300e-2853.57Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU09_ECTSI2.120e-2854.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCV1_ECTSI7.800e-2852.59Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D8LCV4_ECTSI1.880e-2753.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU29_ECTSI3.360e-2753.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYW4_9PHAE1.340e-2654.46Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU08_ECTSI1.210e-2557.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8E7_9PHAE4.200e-2553.45Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JBJ1_9PHAE1.450e-2451.22Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU18_ECTSI4.250e-2448.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137176contigH-elongata_contig137176:920..1673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_000650.1
Exons2
Model size432
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137176.2616.1prot_H-elongata_contig137176.2616.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137176 941..1673 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929814.8363552-UTR-H-elongata_contig137176:919..9401622929814.8363552-UTR-H-elongata_contig137176:919..940Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig137176 920..940 +
1691679168.0386803-UTR-H-elongata_contig137176:919..9401691679168.0386803-UTR-H-elongata_contig137176:919..940Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig137176 920..940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929814.8692124-CDS-H-elongata_contig137176:940..10771622929814.8692124-CDS-H-elongata_contig137176:940..1077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137176 941..1077 +
1691679168.0475664-CDS-H-elongata_contig137176:940..10771691679168.0475664-CDS-H-elongata_contig137176:940..1077Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137176 941..1077 +
1622929814.883794-CDS-H-elongata_contig137176:1399..16731622929814.883794-CDS-H-elongata_contig137176:1399..1673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137176 1400..1673 +
1691679168.0653794-CDS-H-elongata_contig137176:1399..16731691679168.0653794-CDS-H-elongata_contig137176:1399..1673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137176 1400..1673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137176.2616.1

>prot_H-elongata_contig137176.2616.1 ID=prot_H-elongata_contig137176.2616.1|Name=mRNA_H-elongata_contig137176.2616.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
MCYVRLYACRCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRE
TIVIMMTAPGWRGEGNSVNSYPGAGTTLVERITPNTVVGQMELDMGPSMC
IFWCACALGALVTGRPNDSVSGGRAFKRKSSLTMKR*
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mRNA from alignment at H-elongata_contig137176:920..1673+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137176.2616.1 ID=mRNA_H-elongata_contig137176.2616.1|Name=mRNA_H-elongata_contig137176.2616.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=754bp|location=Sequence derived from alignment at H-elongata_contig137176:920..1673+ (Himanthalia elongata Himel1 dioecious)
AGCTCCCCCGACTCCTCTCCGATGTGCTATGTCCGCCTGTACGCCTGCAG GTGTCGACTGAGTGCCTCTCCGGCCACGGGCTTGGTGGGCATGCAGGAGA ATGCCTTCTTAAGCGATTTCTTCGGCTGCATCGGTTTTCTACCGCTGACG TCTCGGGGGTAAGCTATCGGGATCGCCTCCTTGACTTTCGGGGCTTGTGG CTTACATCTTAAAGTATATAGCGCTCTCATTCGTGAACGTTTAGAAACGT CTGAGTGTTCCACATGTCTCCCGATTTCGTCATCTGACAGCGGAATTGTT AGGATACGAGTGCGGAGTCGCGCGGTCTTCACGTAGCCATGGAGACCAAA TTCTTGCCTCGTGGACATTCTTTGTTTTCTTGTGTTTTTTTATTTCGGTG TGTTGCGCCCTGGACCGCCCATCTTTATCGCTCGCCCTGACCAATCCGCT CTGCCTTACACATGCCCCTCGCGCGATAAGTCATATCCGCGAGACCATCG TGATCATGATGACTGCCCCGGGCTGGCGTGGCGAGGGAAACAGCGTTAAC TCTTATCCAGGCGCCGGTACGACGTTAGTAGAGAGAATAACGCCTAACAC AGTGGTGGGCCAGATGGAACTCGACATGGGTCCCTCAATGTGCATCTTCT GGTGCGCTTGCGCACTGGGGGCCTTGGTCACGGGCCGCCCCAACGACTCG GTAAGTGGCGGGAGGGCCTTCAAAAGAAAATCGTCCTTGACTATGAAAAG GTAA
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Coding sequence (CDS) from alignment at H-elongata_contig137176:920..1673+

>mRNA_H-elongata_contig137176.2616.1 ID=mRNA_H-elongata_contig137176.2616.1|Name=mRNA_H-elongata_contig137176.2616.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig137176:920..1673+ (Himanthalia elongata Himel1 dioecious)
ATGTGCTATGTCCGCCTGTACGCCTGCAGGTGTCGACTGAGTGCCTCTCC
GGCCACGGGCTTGGTGGGCATGCAGGAGAATGCCTTCTTAAGCGATTTCT
TCGGCTGCATCGGTTTTCTACCGCTGACGTCTCGGGGATGTGCTATGTCC
GCCTGTACGCCTGCAGGTGTCGACTGAGTGCCTCTCCGGCCACGGGCTTG
GTGGGCATGCAGGAGAATGCCTTCTTAAGCGATTTCTTCGGCTGCATCGG
TTTTCTACCGCTGACGTCTCGGGGTCATATCCGCGAGACCATCGTGATCA
TGATGACTGCCCCGGGCTGGCGTGGCGAGGGAAACAGCGTTAACTCTTAT
CCAGGCGCCGGTACGACGTTAGTAGAGAGAATAACGCCTAACACAGTGGT
GGGCCAGATGGAACTCGACATGGGTCCCTCAATGTGCATCTTCTGGTGCG
CTTGCGCACTGGGGGCCTTGGTCACGGGCCGCCCCAACGACTCGGTAAGT
GGCGGGAGGGCCTTCAAAAGAAAATCGTCCTTGACTATGAAAAGGTAATC
ATATCCGCGAGACCATCGTGATCATGATGACTGCCCCGGGCTGGCGTGGC
GAGGGAAACAGCGTTAACTCTTATCCAGGCGCCGGTACGACGTTAGTAGA
GAGAATAACGCCTAACACAGTGGTGGGCCAGATGGAACTCGACATGGGTC
CCTCAATGTGCATCTTCTGGTGCGCTTGCGCACTGGGGGCCTTGGTCACG
GGCCGCCCCAACGACTCGGTAAGTGGCGGGAGGGCCTTCAAAAGAAAATC
GTCCTTGACTATGAAAAGGTAA
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