mRNA_H-elongata_contig137176.2616.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Match: D8LU27_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU27_ECTSI) HSP 1 Score: 117 bits (293), Expect = 1.300e-28 Identity = 60/112 (53.57%), Postives = 72/112 (64.29%), Query Frame = 1
Query: 49 RCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRETIVIMMTAPGWRGEGNSVNSYPGAGTTLVERITPNTVVGQMELDMGPSMCIFWCACALGALVTGRPNDSVS 384
RCRLSASPATGLVGMQENAFLSDFFGC+GFLPLT+R H+R +V MM + + + + P G G +L GPS C FWCA +GALV GRP +SV+
Sbjct: 95 RCRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTRSHVRGAMVRMMAHSAAQHQLRARHDTPDQGQFGAIFSEDGITTGN-QLSTGPSACTFWCAVGVGALVKGRPAESVT 205
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Match: D8LU09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU09_ECTSI) HSP 1 Score: 118 bits (296), Expect = 2.120e-28 Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 1
Query: 49 RCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRETIVIMMTAPGWRGEGNSVNSYPGAGTTLVERITPNTVVGQMELDMGPSMCIFWCACALGALVTGRPNDSVS 384
R RL+ASPATGLVGMQENAFLSDFFGC+GF+PLTS HIRET+V +M +P + ++ G G+ + R N + +L M PS C FWCA ALGAL G P +SV+
Sbjct: 6 RFRLTASPATGLVGMQENAFLSDFFGCVGFVPLTSHSHIRETMVKIMASPAPLQQSAIGGAFGGVGSMVRARCW-NKASEKPQLPMDPSTCTFWCAIALGALAKGCPVESVA 116
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Match: D8LCV1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV1_ECTSI) HSP 1 Score: 114 bits (286), Expect = 7.800e-28 Identity = 61/116 (52.59%), Postives = 73/116 (62.93%), Query Frame = 1
Query: 49 RCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRETIVIMMTAPGWRGEGNSVNSYPGAGTTLVERITP----NTVVGQMELDMGPSMCIFWCACALGALVTGRPNDSVS 384
RCRLSASPATGLVGMQENAFLSDFFGC+GFLPLT+ HIRET+V +M P + + G E + P + + + M PS C FWCA ALGAL G P +SV+
Sbjct: 10 RCRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTPSHIRETMVTIML-PRASSQQSVFGDDCDEGGHYFEAVAPGGDLSKTSARNQFPMDPSACTFWCAVALGALAKGSPIESVT 124
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Match: D8LCV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV4_ECTSI) HSP 1 Score: 112 bits (281), Expect = 1.880e-27 Identity = 64/120 (53.33%), Postives = 76/120 (63.33%), Query Frame = 1
Query: 49 RCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRETIVIMMTAPGWRGEGNSVNSYPGAGTT----LVERITPNTVVGQM----ELDMGPSMCIFWCACALGALVTGRPNDSVS 384
RCRLSASPATGLV MQEN FLSDFFGCIGFLPLT+ IRET+V +M P +S S G G+ E + P + ++ +L M PS C FWCA ALGALV G P +SV+
Sbjct: 6 RCRLSASPATGLVEMQENTFLSDFFGCIGFLPLTTPSQIRETMVKIMVPPA-----SSQQSVFGDGSDKRGHYFEAVAPGGDLSKISAGSQLPMDPSACTFWCAVALGALVKGSPIESVT 120
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Match: D8LU29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU29_ECTSI) HSP 1 Score: 110 bits (275), Expect = 3.360e-27 Identity = 59/111 (53.15%), Postives = 70/111 (63.06%), Query Frame = 1
Query: 49 RCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRETIVIMMTAPGWRGEGNSVNSYPGAGTTLVERITPNTVVGQMELDMGPSMCIFWCACALGALVTGRPNDSV 381
R R SASPATGLVGMQENA LSDFFGCIGF+PLT+R HIR +V MMT+ + + + P G T + + +L GPS C FWCA LGALV G P +SV
Sbjct: 25 RFRWSASPATGLVGMQENACLSDFFGCIGFMPLTTRSHIRGAMVRMMTSSTPHHQPGAPHDSPAQGH-FGSIFTEDGITPGNQLSTGPSACTFWCAVGLGALVKGSPVESV 134
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Match: A0A6H5JYW4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE) HSP 1 Score: 114 bits (284), Expect = 1.340e-26 Identity = 61/112 (54.46%), Postives = 73/112 (65.18%), Query Frame = 1
Query: 49 RCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRETIVIMMTAPGWRGEGNSVNSYPGAGTTLVERITPNTVVGQMELDMGPSMCIFWCACALGALVTGRPNDSVS 384
R RLSASPATGLVGMQENAFLSDFFGC+GF+PLTS HIRET+V +M +P + + GT +V N + +L M S C FWCA ALGAL G P +SV+
Sbjct: 110 RFRLSASPATGLVGMQENAFLSDFFGCVGFVPLTSHSHIRETMVRIMASPAPLQQSAIGGACSEVGT-MVRAPCWNEASERNQLPMDASTCTFWCAIALGALAKGSPVESVA 220
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Match: D8LU08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU08_ECTSI) HSP 1 Score: 110 bits (276), Expect = 1.210e-25 Identity = 60/104 (57.69%), Postives = 70/104 (67.31%), Query Frame = 1
Query: 49 RCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRETIVIMMTAPGWRGEGNSVNSYPGAGTTLVERITPNTVVGQMELDMGPSMCIFWCACALGALVT 360
R RLSASPA GLVGMQEN FL+DFFGC+GFLPLT++ HIRET+V MM +P R + AGT E ++ L MGPS CIFWCA ALGALV+
Sbjct: 107 RFRLSASPAIGLVGMQENTFLTDFFGCVGFLPLTTQRHIRETMVKMMASPASRRQS-------AAGTDCDE-------APELNLLMGPSTCIFWCAVALGALVS 196
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Match: A0A6H5K8E7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8E7_9PHAE) HSP 1 Score: 109 bits (273), Expect = 4.200e-25 Identity = 62/116 (53.45%), Postives = 72/116 (62.07%), Query Frame = 1
Query: 49 RCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRETIVIMM---TAPGWRGEGNSVNSYPGAGTTLVER-ITPNTVVGQMELDMGPSMCIFWCACALGALVTGRPNDSVS 384
R +LSASPATGLVGMQENAFLSDFFGC+GF+P TSR HIR +V MM TA G ++ G T E ITP +L GPS C FWCA +GAL G P +SV+
Sbjct: 98 RLKLSASPATGLVGMQENAFLSDFFGCVGFMPFTSRSHIRGAMVRMMARSTAQHQPGARHNSPEQSQFGDTFTEDGITPGN-----QLLTGPSCCTFWCAVGMGALAKGSPVESVA 208
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Match: A0A6H5JBJ1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE) HSP 1 Score: 108 bits (269), Expect = 1.450e-24 Identity = 63/123 (51.22%), Postives = 72/123 (58.54%), Query Frame = 1
Query: 49 RCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRETIVIMMT---APGWRGEGNSVNSYPGAGTTLVERI-TPNTVVGQMELDMGPSMCIFWCACALGALVTGRPNDSVSGGRAFKR 405
R RLSASPATGLVGMQENAFLSDFFGC+GFLPLT+ HIR +V MMT AP G SY + I T + + +L GPS C FWCA +GALV G P + V R
Sbjct: 98 RFRLSASPATGLVGMQENAFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLSTAPHQLGA-----SYDSPEQCQFDAILTEDGITTGSQLSTGPSACTFWCAVGVGALVNGSPVELVGNYSGLAR 215
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Match: D8LU18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU18_ECTSI) HSP 1 Score: 103 bits (257), Expect = 4.250e-24 Identity = 54/112 (48.21%), Postives = 70/112 (62.50%), Query Frame = 1
Query: 49 RCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIRETIVIMMTAPGWRGEGNSVNSYPGAGTTLVERITPNTVVGQMELDMGPSMCIFWCACALGALVTGRPNDSVS 384
R RLSASPATGLVGMQENAFL+DFFGC+G LPLT+ H+R +V MMT + + +++ P G G +L GPS C FWCA +GA++ GR +SV+
Sbjct: 60 RFRLSASPATGLVGMQENAFLNDFFGCVGLLPLTTPSHVRGAMVRMMTRSTAQQQLGALHDSPEQGQFGAIFAEDGITTGN-QLLTGPSCCTFWCAVGVGAIMKGRTAESVA 170 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137176.2616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig137176.2616.1 >prot_H-elongata_contig137176.2616.1 ID=prot_H-elongata_contig137176.2616.1|Name=mRNA_H-elongata_contig137176.2616.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp MCYVRLYACRCRLSASPATGLVGMQENAFLSDFFGCIGFLPLTSRGHIREback to top mRNA from alignment at H-elongata_contig137176:920..1673+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig137176.2616.1 ID=mRNA_H-elongata_contig137176.2616.1|Name=mRNA_H-elongata_contig137176.2616.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=754bp|location=Sequence derived from alignment at H-elongata_contig137176:920..1673+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig137176:920..1673+ >mRNA_H-elongata_contig137176.2616.1 ID=mRNA_H-elongata_contig137176.2616.1|Name=mRNA_H-elongata_contig137176.2616.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig137176:920..1673+ (Himanthalia elongata Himel1 dioecious)back to top |