mRNA_H-elongata_contig13714.2614.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13714.2614.1 vs. uniprot
Match: D7G359_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G359_ECTSI) HSP 1 Score: 476 bits (1224), Expect = 1.460e-139 Identity = 386/1079 (35.77%), Postives = 495/1079 (45.88%), Query Frame = 3
Query: 150 GQVTKTVGMGYLYRLYEDNTSKGEAQQRNIPFEEWRAAEEAGGGNIRRLPLQGRYQAQHDMTREMNLRDWAYWR-------PEAEHG--------------ENLYQFMLSPPPGRERFVIGMGTIDKAPLLFYHLLDLANNMESHGLAAHAAVPLALCELVARLCLGPKYVLSAPRAP-----GTQPEALGSKAEINKEAFPALTLACLRRSRLLLKLGPTYQRAAMEAIAAAGRLGISIEEAKRRGMEVDRLLRQREKESV-----------------IEIISSEP-----------SPFWDTTSLPEVASEEAEGK---EVDRDVSGKSVAVTYLGKLEDRRIWALIAKEAILLEECQAAAEYLAAAQMHNEAFHDLENTASCFEIQAALCEAQGYPERALPCLLKASALLRSNGIPGTTATRWSDLAIAMVRASNKAGMGDARTRQVLQVSCEALKGRV------SQVTAPLEWVADGGEEADT------SPTDGVELDAIVAFSWCSSLLAETYKVLPPTSETKLPSLGVVAEGNQQQDADHIATNAWNFKSVQKHYAPDGGELGKPATMKPIYSTNNANRGTLRVQPDDALELLARVAETLRPLGPHPALAAVLRKMAKAWVCRWAAGSTTLSTHRLSAARIVDPGTRTANLENGMDEQQVAECSRFVTSMEHPPQLWCFLENAAANLAEARTVLSAIAASAEPVQEILPISPLIAQGSRPPSGEEIKKVVGRGPEKNKNSGKNIKGLSSSDLNDAAAGSNKDSLNPSSRQPAAVSTPLGRFLVIGQLEEACVRVMLGRAKGEHMSEKQTKKASADEKGLMLVQRYMEATKPASQPTAADMALPQIEQALALAGNATQLLLSSSHEFSPGWTNESQKGLPGVFGTRVMGLLPLALAWEGSALAMLATRAGLSDGSWSPRSYAPIRPPIPSPQITSGSGGKGGSSNAGAKRANAGKARKASKGGSMPDGMKNDLEQNPVPPPPLKEGFDLHNQARWRLEQAVEIAVASKRWDAAGVAAFALGELLGGDDASTTAAAFMLHQSCRARDRLRRWLHEALPRSNRCRLSLDRVTAAQG 3179
G V +TV G L+E + +G ++ F+EW A+ A ++LRDWAYWR P+ ++G ++L ++M +PP GRE FVI T++KAPLLF+HLLDLA MESHGLAAHAA PLAL ELVARLCLGP + G E +G N FPAL LA LRR+RLL KLGPT AAM+A +AAG LG+S EEA RRG EVDR+LRQR++ S+ + SS P S +T+S + + G+ +V D G+ V V LG LEDR++WA++A EA+ L EC+AAAEYLAAA HN+AFHD N SC E QAALC+AQG+P+RALPCLL+ASALL++ G+ G+TA RW +AIA+ K G GDA+ RQ LQ +C+AL+ + ++ +AP A+GG+ A +P+ V+LDA +AFS C LLAE +++ +G + N D G TM YS+ R +TT++T ++GR + R L + QLEEACVR MLGRAKG+ S Q +A+A+ +G+ VQ+YMEA++P PT +M+LPQIEQALALA A + SS S G GV T GLLPL LAWEGSALA+LA+RAGLSDG+W PR P + P P P++EGFDL QARW+LEQA+E AVA+KRWDAAGVAAFAL E+LGGDDAS AAA MLHQSCRAR R+ R L ALP+SNR RL +DRV+AAQG
Sbjct: 1793 GMVEETVECGRRRWLFEASVPEG-GERGETAFQEWCASSXXXXXXXXXXXXXXNSTA--GGRAPLHLRDWAYWRLEPVPVEPKDDNGGDKNNHDSVDDNGEDDLDRYMAAPPAGREPFVISTTTMEKAPLLFHHLLDLAETMESHGLAAHAAAPLALAELVARLCLGPARRRGGGGSXXDGTDGKGAEDVGEDGSAN--VFPALALARLRRARLLFKLGPTCHEAAMQAASAAGPLGVSAEEAARRGSEVDRILRQRKEYSLQQPWQKQEQQPGMPGRNVSAASSLPPAQSTQTRFDGSTLNNTSSGLDPRTAVGVGRKSHDVADDSEGREVEVPRLGNLEDRKVWAMLATEAVQLGECRAAAEYLAAAHRHNDAFHDRNNVVSCLEAQAALCDAQGHPDRALPCLLRASALLKTLGVTGSTAVRWGKMAIAIGSMMRKMGTGDAKIRQTLQAACDALERSIFRGVHKAENSAPATAAAEGGQAAQPQGGAPPTPSQTVDLDAAIAFSGCVCLLAEASTASDELTQSSSSEVGTATKAN------------------------DRGTSRTGTTMT-AYSSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-------------ATTVAT-----------------------------------------------------------------------------------------------IMGR-------------------------------------------RSVRRCLTMVQLEEACVRAMLGRAKGDGHSSTQAAEAAANREGVTPVQKYMEASRPLGHPTVEEMSLPQIEQALALAEMARERCSLSS----------SSGGKSGV--TTNPGLLPLTLAWEGSALALLASRAGLSDGAWVPR--PPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEPAPVLPMQEGFDLREQARWKLEQAMEAAVAAKRWDAAGVAAFALAEMLGGDDASAAAAALMLHQSCRARGRMLRLLRGALPQSNRYRLFMDRVSAAQG 2676
BLAST of mRNA_H-elongata_contig13714.2614.1 vs. uniprot
Match: A0A6H5JQG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG0_9PHAE) HSP 1 Score: 145 bits (366), Expect = 2.060e-34 Identity = 98/220 (44.55%), Postives = 125/220 (56.82%), Query Frame = 3
Query: 150 GQVTKTVGMGYLYRLYEDNTSKGEAQQRNIPFEEWRAAEEAGGGNIRRLPLQGRYQAQHDMTREMNLRDWAYWRPEA--------------------EHGEN-LYQFMLSPPPGRERFVIGMGTIDKAPLLFYHLLDLANNMESHGLAAHAAVPLALCELVARLCLGPKYVLSAPRAPGTQPEALGSKAEINKE----AFPALTLACLRRSRLLLKLGPT 734
G V +TV G L+E++ +G + + F+EW A+ + GG R PL +LRDWAYWR E E+GE+ L ++M +PP GRE FVI I+KAPLLF+HLLDLA MESHGLAAHAA PLAL ELVARLCLGP + + G + G++ +I ++ AFPAL LA LRR+RLL KLGPT
Sbjct: 136 GMVEETVECGRRRWLFEESVPEG-GEGGEMAFQEWCAS--SSGGYSGRAPL--------------HLRDWAYWRLEPVPVEPKDDNGGDKNNYDSVDENGEDDLDRYMATPPAGREPFVISTTIIEKAPLLFHHLLDLAETMESHGLAAHAAAPLALAELVARLCLGPARRRNGGGSGGVGTDGKGAE-DIGEDGSGNAFPALALARLRRARLLFKLGPT 337 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13714.2614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13714.2614.1 >prot_H-elongata_contig13714.2614.1 ID=prot_H-elongata_contig13714.2614.1|Name=mRNA_H-elongata_contig13714.2614.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1018bp MAAAENEIGQVTKTVGMGYLYRLYEDNTSKGEAQQRNIPFEEWRAAEEAGback to top mRNA from alignment at H-elongata_contig13714:684..7949+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13714.2614.1 ID=mRNA_H-elongata_contig13714.2614.1|Name=mRNA_H-elongata_contig13714.2614.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7266bp|location=Sequence derived from alignment at H-elongata_contig13714:684..7949+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13714:684..7949+ >mRNA_H-elongata_contig13714.2614.1 ID=mRNA_H-elongata_contig13714.2614.1|Name=mRNA_H-elongata_contig13714.2614.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=6108bp|location=Sequence derived from alignment at H-elongata_contig13714:684..7949+ (Himanthalia elongata Himel1 dioecious)back to top |