mRNA_H-elongata_contig137132.2613.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137132.2613.1
Unique NamemRNA_H-elongata_contig137132.2613.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig137132.2613.1 vs. uniprot
Match: D8LD25_ECTSI (3-hydroxyisobutyrate dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD25_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.120e-34
Identity = 62/81 (76.54%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:    1 MIDAPVSGGVPAASEATLTFIVGGTEQGTERARPLLLSMGAKVLYCGEAGSGCIAKVCNNLCLAISMVGVSEAMSLGSKMG 243
            M+DAPVSGGVPAA+ ATLTF+VGGT++G E ARPLL++MG+K ++CG+AG+GCIAKVCNNL LAISM+GV+EAMSLGSKMG
Sbjct:  140 MVDAPVSGGVPAAANATLTFMVGGTDEGLELARPLLMAMGSKAVHCGDAGAGCIAKVCNNLSLAISMIGVAEAMSLGSKMG 220
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BLAST of mRNA_H-elongata_contig137132.2613.1 vs. uniprot
Match: A0A835YMW9_9STRA (3-hydroxyisobutyrate dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMW9_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.270e-28
Identity = 55/81 (67.90%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:    1 MIDAPVSGGVPAASEATLTFIVGGTEQGTERARPLLLSMGAKVLYCGEAGSGCIAKVCNNLCLAISMVGVSEAMSLGSKMG 243
            M+DAPVSGGVPAA+  TLTFIVGGT+   ERA PLL +MG++ L CG AG+GC+AK+CNNL LAISMVG++E M+LG K+G
Sbjct:  147 MVDAPVSGGVPAAAAGTLTFIVGGTQPAFERAVPLLNAMGSRALLCGSAGAGCVAKLCNNLALAISMVGIAEGMNLGVKLG 227
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BLAST of mRNA_H-elongata_contig137132.2613.1 vs. uniprot
Match: UPI0001C7C1F0 (probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial isoform X2 n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=UPI0001C7C1F0)

HSP 1 Score: 106 bits (264), Expect = 8.090e-26
Identity = 51/81 (62.96%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    1 MIDAPVSGGVPAASEATLTFIVGGTEQGTERARPLLLSMGAKVLYCGEAGSGCIAKVCNNLCLAISMVGVSEAMSLGSKMG 243
            M+DAPVSGGVPAA    LTF+VGG+E+    A+PLLLSMG K +YCG AG+G +AK+CNN+ +AISM+GVSEA +LG  +G
Sbjct:  152 MLDAPVSGGVPAAEAGKLTFMVGGSEEAYLAAKPLLLSMGKKTIYCGGAGNGSVAKICNNMAMAISMLGVSEAFALGQNLG 232
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BLAST of mRNA_H-elongata_contig137132.2613.1 vs. uniprot
Match: A0A146LCS6_LYGHE (3-hydroxyisobutyrate dehydrogenase n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LCS6_LYGHE)

HSP 1 Score: 105 bits (262), Expect = 1.470e-25
Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = 1 
Query:    4 IDAPVSGGVPAASEATLTFIVGGTEQGTERARPLLLSMGAKVLYCGEAGSGCIAKVCNNLCLAISMVGVSEAMSLGSKMG 243
            +DAPVSGG+  A   TLTF+VGG +QG ++A P+LLSMG  V++CG AGSG IAK CNNL LAISM+GV+EAM++G KMG
Sbjct:  149 VDAPVSGGIIGAENGTLTFMVGGEDQGAKKAEPVLLSMGKNVIHCGPAGSGQIAKNCNNLLLAISMIGVAEAMNIGIKMG 228
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BLAST of mRNA_H-elongata_contig137132.2613.1 vs. uniprot
Match: A0A3B6SQY7_WHEAT (3-hydroxyisobutyrate dehydrogenase n=2 Tax=Triticum TaxID=4564 RepID=A0A3B6SQY7_WHEAT)

HSP 1 Score: 104 bits (260), Expect = 1.730e-25
Identity = 51/81 (62.96%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    1 MIDAPVSGGVPAASEATLTFIVGGTEQGTERARPLLLSMGAKVLYCGEAGSGCIAKVCNNLCLAISMVGVSEAMSLGSKMG 243
            M+DAPVSGGVPAA   TLTF+VGG E+    A+PLLL+MG K++YCG AG+G  AK+CNN+ +AISM+GVSEA +LG  +G
Sbjct:  116 MLDAPVSGGVPAAEAGTLTFMVGGLEETYIAAKPLLLAMGKKLIYCGGAGNGSAAKICNNMAMAISMLGVSEAFALGQNLG 196
[Close]
BLAST of mRNA_H-elongata_contig137132.2613.1 vs. uniprot
Match: A0A453SX19_AEGTS (Uncharacterized protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453SX19_AEGTS)

HSP 1 Score: 103 bits (257), Expect = 3.030e-25
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    1 MIDAPVSGGVPAASEATLTFIVGGTEQGTERARPLLLSMGAKVLYCGEAGSGCIAKVCNNLCLAISMVGVSEAMSLGSKMG 243
            M+DAPVSGGVPAA   TLTF+VGG E+    A+PLLL+MG K++YCG AG+G  AK+CNN  +AISM+GVSEA +LG  +G
Sbjct:  167 MLDAPVSGGVPAAEAGTLTFMVGGLEETYIAAKPLLLAMGKKLIYCGGAGNGSAAKICNNTAMAISMLGVSEAFALGQNLG 247
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BLAST of mRNA_H-elongata_contig137132.2613.1 vs. uniprot
Match: A0A3B6RQD2_WHEAT (3-hydroxyisobutyrate dehydrogenase n=11 Tax=Triticinae TaxID=1648030 RepID=A0A3B6RQD2_WHEAT)

HSP 1 Score: 103 bits (257), Expect = 4.300e-25
Identity = 51/81 (62.96%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    1 MIDAPVSGGVPAASEATLTFIVGGTEQGTERARPLLLSMGAKVLYCGEAGSGCIAKVCNNLCLAISMVGVSEAMSLGSKMG 243
            M+DAPVSGGVPAA   TLTF+VGG E+    A+PLLL+MG K++YCG AG+G  AK+CNN+ +AISM+GVSEA +LG  +G
Sbjct:  110 MMDAPVSGGVPAAEAGTLTFMVGGLEETYIAAKPLLLAMGKKLIYCGGAGNGSAAKLCNNMAMAISMLGVSEAFALGQNLG 190
[Close]
BLAST of mRNA_H-elongata_contig137132.2613.1 vs. uniprot
Match: A0A075AHY5_9TREM (3-hydroxyisobutyrate dehydrogenase n=3 Tax=Opisthorchiidae TaxID=6196 RepID=A0A075AHY5_9TREM)

HSP 1 Score: 104 bits (260), Expect = 5.620e-25
Identity = 50/80 (62.50%), Postives = 64/80 (80.00%), Query Frame = 1 
Query:    4 IDAPVSGGVPAASEATLTFIVGGTEQGTERARPLLLSMGAKVLYCGEAGSGCIAKVCNNLCLAISMVGVSEAMSLGSKMG 243
            IDAPVSGGVP+A +ATLTF+VGG+E+   RA+P L  MG ++ +CG  G+G  AK+CNN+ LAISMVGVSEAM LG ++G
Sbjct:  200 IDAPVSGGVPSAEQATLTFMVGGSEEACSRAKPFLECMGKRIFHCGPVGAGLAAKICNNMLLAISMVGVSEAMELGRRLG 279
[Close]
BLAST of mRNA_H-elongata_contig137132.2613.1 vs. uniprot
Match: B9FQH3_ORYSJ (3-hydroxyisobutyrate dehydrogenase n=3 Tax=Oryza TaxID=4527 RepID=B9FQH3_ORYSJ)

HSP 1 Score: 106 bits (264), Expect = 6.270e-25
Identity = 51/81 (62.96%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    1 MIDAPVSGGVPAASEATLTFIVGGTEQGTERARPLLLSMGAKVLYCGEAGSGCIAKVCNNLCLAISMVGVSEAMSLGSKMG 243
            M+DAPVSGGVPAA    LTF+VGG+E+    A+PLLLSMG K +YCG AG+G +AK+CNN+ +AISM+GVSEA +LG  +G
Sbjct:  608 MLDAPVSGGVPAAEAGKLTFMVGGSEEAYLAAKPLLLSMGKKTIYCGGAGNGSVAKICNNMAMAISMLGVSEAFALGQNLG 688
[Close]
BLAST of mRNA_H-elongata_contig137132.2613.1 vs. uniprot
Match: A0A6A1WC94_9ROSI (3-hydroxyisobutyrate dehydrogenase n=18 Tax=Fagales TaxID=3502 RepID=A0A6A1WC94_9ROSI)

HSP 1 Score: 103 bits (256), Expect = 6.830e-25
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    1 MIDAPVSGGVPAASEATLTFIVGGTEQGTERARPLLLSMGAKVLYCGEAGSGCIAKVCNNLCLAISMVGVSEAMSLGSKMG 243
            M+DAPVSGGV AA   TLTF+VGG+E+    A+PL LSMG   +YCGEAG+G  AK+CNNL +A+SM+GVSEA++LG  +G
Sbjct:  117 MLDAPVSGGVLAAEAGTLTFMVGGSEKAYLAAKPLFLSMGKNTIYCGEAGNGSAAKICNNLAMAVSMLGVSEALALGQSLG 197
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137132.2613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD25_ECTSI1.120e-3476.543-hydroxyisobutyrate dehydrogenase n=1 Tax=Ectocar... [more]
A0A835YMW9_9STRA2.270e-2867.903-hydroxyisobutyrate dehydrogenase n=1 Tax=Tribone... [more]
UPI0001C7C1F08.090e-2662.96probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
A0A146LCS6_LYGHE1.470e-2565.003-hydroxyisobutyrate dehydrogenase n=2 Tax=Lygus h... [more]
A0A3B6SQY7_WHEAT1.730e-2562.963-hydroxyisobutyrate dehydrogenase n=2 Tax=Triticu... [more]
A0A453SX19_AEGTS3.030e-2562.96Uncharacterized protein n=2 Tax=Aegilops tauschii ... [more]
A0A3B6RQD2_WHEAT4.300e-2562.963-hydroxyisobutyrate dehydrogenase n=11 Tax=Tritic... [more]
A0A075AHY5_9TREM5.620e-2562.503-hydroxyisobutyrate dehydrogenase n=3 Tax=Opistho... [more]
B9FQH3_ORYSJ6.270e-2562.963-hydroxyisobutyrate dehydrogenase n=3 Tax=Oryza T... [more]
A0A6A1WC94_9ROSI6.830e-2561.733-hydroxyisobutyrate dehydrogenase n=18 Tax=Fagale... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137132contigH-elongata_contig137132:469..1144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue2e-28
Seed eggNOG ortholog2880.D8LD25
KEGG rclassRC00099
KEGG koko:K00020
KEGG ReactionR05066
KEGG Pathwayko00280,ko01100,map00280,map01100
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008442,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0071704,GO:1901564
EggNOG free text desc.3hydroxyisobutyrate dehydrogenase
EggNOG OGsCOG2084@1,KOG0409@2759
EC1.1.1.31
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929814.4505348-CDS-H-elongata_contig137132:468..5431622929814.4505348-CDS-H-elongata_contig137132:468..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137132 469..543 -
1691679167.8706203-CDS-H-elongata_contig137132:468..5431691679167.8706203-CDS-H-elongata_contig137132:468..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137132 469..543 -
1622929814.4751136-CDS-H-elongata_contig137132:976..11441622929814.4751136-CDS-H-elongata_contig137132:976..1144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137132 977..1144 -
1691679167.8803906-CDS-H-elongata_contig137132:976..11441691679167.8803906-CDS-H-elongata_contig137132:976..1144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137132 977..1144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137132.2613.1prot_H-elongata_contig137132.2613.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137132 469..1144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137132.2613.1

>prot_H-elongata_contig137132.2613.1 ID=prot_H-elongata_contig137132.2613.1|Name=mRNA_H-elongata_contig137132.2613.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MIDAPVSGGVPAASEATLTFIVGGTEQGTERARPLLLSMGAKVLYCGEAG
SGCIAKVCNNLCLAISMVGVSEAMSLGSKMG
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mRNA from alignment at H-elongata_contig137132:469..1144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137132.2613.1 ID=mRNA_H-elongata_contig137132.2613.1|Name=mRNA_H-elongata_contig137132.2613.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=676bp|location=Sequence derived from alignment at H-elongata_contig137132:469..1144- (Himanthalia elongata Himel1 dioecious)
ATGATCGACGCCCCGGTCAGCGGGGGAGTTCCGGCAGCCTCCGAGGCCAC
TCTGACGTTCATTGTCGGGGGGACGGAGCAGGGGACGGAACGCGCCCGCC
CCCTGCTCCTTTCTATGGGCGCCAAGGTTTTATATTGCGGGGAGGCGGGA
TCTGGATGCATCGCGAAGGTCAGCAGTTTGAGAACGAGGATATTCTGCCC
CTCCACCCCCTCCACCCCCTAACCCTAAAAATAGATACTAGATACTAGAT
ACTAGATACTAGATAATATATAATTGCCCTTGCCCAAATATGAAATATGT
GAGGGCATTTTATGTTTTTTGTTGTTCTATATTTCTTCCTAAAATTGATA
ATCTCTTGACAAATAATGTAATATCCGTGCACGCGCGTGAAATGTGTACG
ACGGATAATGTTGCTTTATGACGTCGTCCAAATTTCGACCTTGCGGCGGG
CGACCGCTTTCCCTAATCTACGTTTTAATGAACACCTCCTTTACCGAACA
CAATTTTCCGAACTTTATATGTTAACCGAACACCATTATTTACCCCAAAC
CATTGATCTAACACTTTATATTTACCCAACACCCTTTACTGAACACCCAA
GGTTTGCAACAATCTCTGCCTGGCGATTTCGATGGTGGGGGTGTCGGAAG
CTATGAGCCTGGGGTCTAAGATGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig137132:469..1144-

>mRNA_H-elongata_contig137132.2613.1 ID=mRNA_H-elongata_contig137132.2613.1|Name=mRNA_H-elongata_contig137132.2613.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig137132:469..1144- (Himanthalia elongata Himel1 dioecious)
ATGATCGACGCCCCGGTCAGCGGGGGAGTTCCGGCAGCCTCCGAGGCCAC
TCTGACGTTCATTGTCGGGGGGACGGAGCAGGGGACGGAACGCGCCCGCC
CCCTGCTCCTTTCTATGGGCGCCAAGGTTTTATATTGCGGGGAGGCGGGA
TCTGGATGCATCGCGAAGATGATCGACGCCCCGGTCAGCGGGGGAGTTCC
GGCAGCCTCCGAGGCCACTCTGACGTTCATTGTCGGGGGGACGGAGCAGG
GGACGGAACGCGCCCGCCCCCTGCTCCTTTCTATGGGCGCCAAGGTTTTA
TATTGCGGGGAGGCGGGATCTGGATGCATCGCGAAGGTTTGCAACAATCT
CTGCCTGGCGATTTCGATGGTGGGGGTGTCGGAAGCTATGAGCCTGGGGT
CTAAGATGGGGGTTTGCAACAATCTCTGCCTGGCGATTTCGATGGTGGGG
GTGTCGGAAGCTATGAGCCTGGGGTCTAAGATGGGG
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