mRNA_H-elongata_contig137106.2612.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137106.2612.1
Unique NamemRNA_H-elongata_contig137106.2612.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig137106.2612.1 vs. uniprot
Match: D7FNN9_ECTSI (Phorbol-ester/DAG-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN9_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.870e-40
Identity = 73/105 (69.52%), Postives = 82/105 (78.10%), Query Frame = 2 
Query:  272 ADPLESVPERERLALAIRFG-------GIRMCAALSHGHSFESSIFRLPAKCLACQELVWGPFTRGCVCLVCKLTVHRSCTGTATMPKCPTMDLFADFCRSELGL 565
            +DPL  + E ERLAL IRFG       G  MCAA+SHGHSF+SSIFRLPAKC AC ELVWGPFTRGC CL C +TVHRSCTG A++P+CPT D+F  FCRSELGL
Sbjct:   31 SDPLAGLSESERLALLIRFGAAAAGPKGGGMCAAMSHGHSFQSSIFRLPAKCSACHELVWGPFTRGCTCLTCSVTVHRSCTGAASLPRCPTKDVFDAFCRSELGL 135
[Close]
BLAST of mRNA_H-elongata_contig137106.2612.1 vs. uniprot
Match: UPI001455711A (calcium-independent protein kinase C-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455711A)

HSP 1 Score: 53.1 bits (126), Expect = 3.640e-5
Identity = 21/58 (36.21%), Postives = 34/58 (58.62%), Query Frame = 2 
Query:  356 SHGHSFESSIFRLPAKCLACQELVWGPFTRGCVCLVCKLTVHRSCTGTATMPKCPTMD 529
            ++GH F S+ F+ P  C  C + +WG +++G  C VC++ VH+ C     +P CP  D
Sbjct:   74 NNGHEFRSTSFKQPHFCSHCNKFIWGIWSQGYQCKVCRVVVHKRCHNQI-IPPCPIAD 130
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137106.2612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNN9_ECTSI1.870e-4069.52Phorbol-ester/DAG-type domain-containing protein n... [more]
UPI001455711A3.640e-536.21calcium-independent protein kinase C-like n=1 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137106contigH-elongata_contig137106:1015..1645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size632
Cds size471
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929814.3789248-UTR-H-elongata_contig137106:1014..11741622929814.3789248-UTR-H-elongata_contig137106:1014..1174Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig137106 1015..1174 +
1691679167.849931-UTR-H-elongata_contig137106:1014..11741691679167.849931-UTR-H-elongata_contig137106:1014..1174Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig137106 1015..1174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929814.404893-CDS-H-elongata_contig137106:1174..16451622929814.404893-CDS-H-elongata_contig137106:1174..1645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137106 1175..1645 +
1691679167.8625214-CDS-H-elongata_contig137106:1174..16451691679167.8625214-CDS-H-elongata_contig137106:1174..1645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137106 1175..1645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137106.2612.1prot_H-elongata_contig137106.2612.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137106 1175..1645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137106.2612.1

>prot_H-elongata_contig137106.2612.1 ID=prot_H-elongata_contig137106.2612.1|Name=mRNA_H-elongata_contig137106.2612.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp
MVAHPMLGSGNNATNSAVHLSPDQKKKNAGVPSVFDVADPLESVPERERL
ALAIRFGGIRMCAALSHGHSFESSIFRLPAKCLACQELVWGPFTRGCVCL
VCKLTVHRSCTGTATMPKCPTMDLFADFCRSELGLRRPAPRASFASDGQE
GVLVSAP
back to top

mRNA from alignment at H-elongata_contig137106:1015..1645+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137106.2612.1 ID=mRNA_H-elongata_contig137106.2612.1|Name=mRNA_H-elongata_contig137106.2612.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=631bp|location=Sequence derived from alignment at H-elongata_contig137106:1015..1645+ (Himanthalia elongata Himel1 dioecious)
CGTTTGAGGCCGATTCCTCACATGCGGTTGAACCAGGAGAGTAAAGAGCA
TCGCTTGAGACGAAATAAACGTAGAAGACAGGTGACGCCTCGGGATTGAA
GGGTACCATTGACACGACCCGATAATCAAATCATCGCTCCTCCTTTACCC
TCTCCTCGTTATGGTGGCACACCCCATGTTGGGGTCCGGTAACAACGCAA
CGAACTCGGCAGTTCACCTTTCACCAGATCAGAAGAAGAAAAATGCAGGG
GTTCCTTCGGTCTTTGACGTTGCTGATCCGCTTGAGAGCGTTCCCGAGCG
TGAACGCCTCGCGCTGGCGATAAGGTTCGGAGGTATCCGCATGTGCGCCG
CTTTATCTCACGGTCATAGCTTCGAGTCTTCTATATTCCGCTTGCCGGCC
AAATGCCTGGCCTGCCAAGAACTGGTTTGGGGGCCGTTCACTCGGGGCTG
CGTGTGTCTCGTGTGCAAGCTCACGGTACACCGTTCTTGTACTGGTACAG
CCACGATGCCCAAGTGCCCAACGATGGACCTGTTCGCCGACTTCTGCCGC
TCGGAACTCGGTCTTCGGCGTCCGGCGCCGAGGGCCTCCTTCGCCTCGGA
TGGACAAGAAGGGGTGCTAGTGTCTGCCCCA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig137106:1015..1645+

>mRNA_H-elongata_contig137106.2612.1 ID=mRNA_H-elongata_contig137106.2612.1|Name=mRNA_H-elongata_contig137106.2612.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig137106:1015..1645+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGCACACCCCATGTTGGGGTCCGGTAACAACGCAACGAACTCGGC
AGTTCACCTTTCACCAGATCAGAAGAAGAAAAATGCAGGGGTTCCTTCGG
TCTTTGACGTTGCTGATCCGCTTGAGAGCGTTCCCGAGCGTGAACGCCTC
GCGCTGGCGATAAGGTTCGGAGGTATCCGCATGTGCGCCGCTTTATCTCA
CGGTCATAGCTTCGAGTCTTCTATATTCCGCTTGCCGGCCAAATGCCTGG
CCTGCCAAGAACTGGTTTGGGGGCCGTTCACTCGGGGCTGCGTGTGTCTC
GTGTGCAAGCTCACGGTACACCGTTCTTGTACTGGTACAGCCACGATGCC
CAAGTGCCCAACGATGGACCTGTTCGCCGACTTCTGCCGCTCGGAACTCG
GTCTTCGGCGTCCGGCGCCGAGGGCCTCCTTCGCCTCGGATGGACAAGAA
GGGGTGCTAGTGTCTGCCCCAATGGTGGCACACCCCATGTTGGGGTCCGG
TAACAACGCAACGAACTCGGCAGTTCACCTTTCACCAGATCAGAAGAAGA
AAAATGCAGGGGTTCCTTCGGTCTTTGACGTTGCTGATCCGCTTGAGAGC
GTTCCCGAGCGTGAACGCCTCGCGCTGGCGATAAGGTTCGGAGGTATCCG
CATGTGCGCCGCTTTATCTCACGGTCATAGCTTCGAGTCTTCTATATTCC
GCTTGCCGGCCAAATGCCTGGCCTGCCAAGAACTGGTTTGGGGGCCGTTC
ACTCGGGGCTGCGTGTGTCTCGTGTGCAAGCTCACGGTACACCGTTCTTG
TACTGGTACAGCCACGATGCCCAAGTGCCCAACGATGGACCTGTTCGCCG
ACTTCTGCCGCTCGGAACTCGGTCTTCGGCGTCCGGCGCCGAGGGCCTCC
TTCGCCTCGGATGGACAAGAAGGGGTGCTAGTGTCTGCCCCA
back to top