mRNA_H-elongata_contig137078.2611.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137078.2611.1
Unique NamemRNA_H-elongata_contig137078.2611.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig137078.2611.1 vs. uniprot
Match: D8LKP3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKP3_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 9.710e-35
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 3
Query:    3 AYTSDDSVAFLVDCVLQGDLLIRCRHLSPDGRRVSMFRAAFHTGYVPSGVLRLTKQQLDGACADGRFHQ 209
            AYTSDDS++F VDCVLQGDLL+RCRH+SP GRRVSMFRAAFHTGYVP GVLRLTKQQLDGACAD RFHQ
Sbjct:  375 AYTSDDSISFPVDCVLQGDLLVRCRHVSPTGRRVSMFRAAFHTGYVPCGVLRLTKQQLDGACADDRFHQ 443          
BLAST of mRNA_H-elongata_contig137078.2611.1 vs. uniprot
Match: A0A1V9Y3Y7_9STRA (Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y3Y7_9STRA)

HSP 1 Score: 110 bits (276), Expect = 3.840e-28
Identity = 50/67 (74.63%), Postives = 58/67 (86.57%), Query Frame = 3
Query:    3 AYTSDDSVAFLVDCVLQGDLLIRCRHLSPDGRRVSMFRAAFHTGYVPSGVLRLTKQQLDGACADGRF 203
            A TSD SV+F VDC+LQGD+LIRCRHL+  G+R+SMFRAAFHTGY+P G+LRLTK QLDGAC D RF
Sbjct:  107 ASTSDGSVSFNVDCMLQGDVLIRCRHLTDSGQRISMFRAAFHTGYIPMGILRLTKAQLDGACQDPRF 173          
BLAST of mRNA_H-elongata_contig137078.2611.1 vs. uniprot
Match: A0A7S2BHX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BHX5_9STRA)

HSP 1 Score: 108 bits (271), Expect = 9.760e-27
Identity = 52/67 (77.61%), Postives = 54/67 (80.60%), Query Frame = 3
Query:    3 AYTSDDSVAFLVDCVLQGDLLIRCRHLSPDGRRVSMFRAAFHTGYVPSGVLRLTKQQLDGACADGRF 203
            AY SD SVAF VD VLQGDLL+RCRHL+  G RVSMFRA FHTGYVP GVLRL K QLDGAC D RF
Sbjct:  159 AYPSDQSVAFSVDAVLQGDLLLRCRHLTAKGTRVSMFRAGFHTGYVPCGVLRLNKAQLDGACTDPRF 225          
BLAST of mRNA_H-elongata_contig137078.2611.1 vs. uniprot
Match: A0A1V9Y613_9STRA (Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y613_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.170e-26
Identity = 49/67 (73.13%), Postives = 58/67 (86.57%), Query Frame = 3
Query:    3 AYTSDDSVAFLVDCVLQGDLLIRCRHLSPDGRRVSMFRAAFHTGYVPSGVLRLTKQQLDGACADGRF 203
            A TSD SV+F VDC+LQGD+L+RCRHL+  G+R+SMFRAAFHTGY+P G+LRLTK QLDGAC D RF
Sbjct:  353 ASTSDGSVSFNVDCMLQGDVLVRCRHLTDSGQRISMFRAAFHTGYIPMGILRLTKAQLDGACQDPRF 419          
BLAST of mRNA_H-elongata_contig137078.2611.1 vs. uniprot
Match: A0A3F2RZ89_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RZ89_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.250e-26
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 3
Query:    3 AYTSDDSVAFLVDCVLQGDLLIRCRHLSPDGRRVSMFRAAFHTGYVPSGVLRLTKQQLDGACADGRFHQ 209
            A TSD SV+F V+C+LQGD+LIRCRHL+  G RVSMFR AFHTGY+P G+LRLTK QLDGAC D RF Q
Sbjct:  424 ASTSDGSVSFNVNCMLQGDVLIRCRHLTDTGERVSMFRGAFHTGYIPHGILRLTKAQLDGACGDSRFDQ 492          
BLAST of mRNA_H-elongata_contig137078.2611.1 vs. uniprot
Match: A0A484ECN3_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ECN3_BRELC)

HSP 1 Score: 109 bits (272), Expect = 3.140e-26
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 3
Query:    3 AYTSDDSVAFLVDCVLQGDLLIRCRHLSPDGRRVSMFRAAFHTGYVPSGVLRLTKQQLDGACADGRFHQ 209
            A T D S++F V+C+LQGD+LIRCRHL+  G+RVSMFR AFHTGY+P G+LRLTK QLDGAC+D RF Q
Sbjct:  424 ANTGDGSISFNVNCMLQGDILIRCRHLTNSGQRVSMFRGAFHTGYIPQGILRLTKAQLDGACSDSRFDQ 492          
BLAST of mRNA_H-elongata_contig137078.2611.1 vs. uniprot
Match: A0A6A4G6V6_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A4G6V6_9STRA)

HSP 1 Score: 109 bits (272), Expect = 3.140e-26
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 3
Query:    3 AYTSDDSVAFLVDCVLQGDLLIRCRHLSPDGRRVSMFRAAFHTGYVPSGVLRLTKQQLDGACADGRFHQ 209
            A T D SV+F VDC+LQGD+L+RCRHL+  G RVSMFR AFHTGY+P G+LRLTK QLDGAC D RF Q
Sbjct:  419 ASTGDGSVSFNVDCMLQGDILVRCRHLTAAGERVSMFRGAFHTGYIPQGILRLTKAQLDGACGDPRFDQ 487          
BLAST of mRNA_H-elongata_contig137078.2611.1 vs. uniprot
Match: A0A6G0WDR9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDR9_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.140e-26
Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 3
Query:    9 TSDDSVAFLVDCVLQGDLLIRCRHLSPDGRRVSMFRAAFHTGYVPSGVLRLTKQQLDGACADGRF 203
            TSD S++F VDC+LQGD+LIRCRHL+  G R+SMFRAAFHTGY+P G+LRLTK QLDGAC D RF
Sbjct:  349 TSDGSLSFHVDCMLQGDILIRCRHLTDSGARISMFRAAFHTGYIPLGILRLTKGQLDGACQDNRF 413          
BLAST of mRNA_H-elongata_contig137078.2611.1 vs. uniprot
Match: A0A7S2S2N4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2N4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.840e-26
Identity = 49/67 (73.13%), Postives = 56/67 (83.58%), Query Frame = 3
Query:    3 AYTSDDSVAFLVDCVLQGDLLIRCRHLSPDGRRVSMFRAAFHTGYVPSGVLRLTKQQLDGACADGRF 203
            AY SD S++F+VD VLQGD+L+RCRH++  G RVSMFRAAFHTGYVP GVLRL K QLDGAC D RF
Sbjct:  377 AYPSDQSISFVVDAVLQGDVLLRCRHITAKGARVSMFRAAFHTGYVPRGVLRLNKAQLDGACLDSRF 443          
BLAST of mRNA_H-elongata_contig137078.2611.1 vs. uniprot
Match: M4BD47_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BD47_HYAAE)

HSP 1 Score: 108 bits (270), Expect = 5.850e-26
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 3
Query:    3 AYTSDDSVAFLVDCVLQGDLLIRCRHLSPDGRRVSMFRAAFHTGYVPSGVLRLTKQQLDGACADGRFHQ 209
            A T+D SV+F V+C+LQGD+LIRCRHL+  G RVSMFR AFHTGY+P GVLRLTK QLDGAC D RF Q
Sbjct:  420 ASTADGSVSFNVNCMLQGDILIRCRHLTDAGERVSMFRGAFHTGYIPQGVLRLTKAQLDGACTDTRFDQ 488          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137078.2611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKP3_ECTSI9.710e-3588.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1V9Y3Y7_9STRA3.840e-2874.63Phosphatidylinositol-3,4,5-trisphosphate 3-phospha... [more]
A0A7S2BHX5_9STRA9.760e-2777.61Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A1V9Y613_9STRA1.170e-2673.13Phosphatidylinositol-3,4,5-trisphosphate 3-phospha... [more]
A0A3F2RZ89_9STRA2.250e-2672.46Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A484ECN3_BRELC3.140e-2669.57Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A6A4G6V6_9STRA3.140e-2671.01Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A6G0WDR9_9STRA5.140e-2673.85Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S2S2N4_9STRA5.840e-2673.13Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
M4BD47_HYAAE5.850e-2672.46Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137078contigH-elongata_contig137078:775..1465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size210
Cds size156
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137078.2611.1prot_H-elongata_contig137078.2611.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137078 828..1465 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929814.3129075-UTR-H-elongata_contig137078:774..8271622929814.3129075-UTR-H-elongata_contig137078:774..827Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig137078 775..827 -
1691679167.8244278-UTR-H-elongata_contig137078:774..8271691679167.8244278-UTR-H-elongata_contig137078:774..827Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig137078 775..827 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929814.3278842-CDS-H-elongata_contig137078:827..9181622929814.3278842-CDS-H-elongata_contig137078:827..918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137078 828..918 -
1691679167.8322055-CDS-H-elongata_contig137078:827..9181691679167.8322055-CDS-H-elongata_contig137078:827..918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137078 828..918 -
1622929814.3403246-CDS-H-elongata_contig137078:1400..14651622929814.3403246-CDS-H-elongata_contig137078:1400..1465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137078 1401..1465 -
1691679167.840584-CDS-H-elongata_contig137078:1400..14651691679167.840584-CDS-H-elongata_contig137078:1400..1465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137078 1401..1465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137078.2611.1

>prot_H-elongata_contig137078.2611.1 ID=prot_H-elongata_contig137078.2611.1|Name=mRNA_H-elongata_contig137078.2611.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
GPTRATTAWHFWWTASCKATCSSVVATSVRTGEGFPCSVRRFIPGTCLVA
S*
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mRNA from alignment at H-elongata_contig137078:775..1465-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137078.2611.1 ID=mRNA_H-elongata_contig137078.2611.1|Name=mRNA_H-elongata_contig137078.2611.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=691bp|location=Sequence derived from alignment at H-elongata_contig137078:775..1465- (Himanthalia elongata Himel1 dioecious)
GGGCCTACACGAGCGACGACAGCGTGGCATTTTTGGTGGACTGCGTCTTG CAAGGCGACCTGCTCGTGAGCTAGCCCGATGTTTTTTCTCGGGGTTTTTT TTCGTGTTTCTCTCAACCACCTGTGAAGTGGGAAACCATTTTTCGTTTGT TCCGATTATTTTTTGGTGCCCCCGCATCGCGTTGTTTTCTTAGTGGAAAA TGGAACATGGGATGGAACGGGATGGGACGGGACAGAACTGGGGGGCATGT ACGGAATGACAAGTAGAGATGGATCATGGAGGTATCGTTAATATTAGAAG TAGAAGATGGAAATAAAATGGCCATTTGTCAGACCCGCCAAATGTAATTT AAAGACGGAAGCTTGAAAAAGTGGAAACGAGCGTGCATCATTTGATTGAT CAATCATTGATTTAACACGGTTGGCGGTGTCCCACCACGATCTGTAACAT ATTTACCCTAAGTCCTAAGGCCTTGCAGGATGCTCGCAAAACCCTCTCGT GACTTGGTTTCGCCACGCGTTGGGAACGTGGTTCCCGATTTCCGCAGATC CGTTGTCGCCACCTCAGTCCGGACGGGAGAAGGGTTTCCATGTTCCGTGC GGCGTTTCATACCGGGTACGTGCCTAGTGGCGTCTTGAGGCTGACCAAGC AGCAGCTCGACGGAGCCTGCGCGGATGGCCGCTTCCACCAG
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Coding sequence (CDS) from alignment at H-elongata_contig137078:775..1465-

>mRNA_H-elongata_contig137078.2611.1 ID=mRNA_H-elongata_contig137078.2611.1|Name=mRNA_H-elongata_contig137078.2611.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig137078:775..1465- (Himanthalia elongata Himel1 dioecious)
GGGCCTACACGAGCGACGACAGCGTGGCATTTTTGGTGGACTGCGTCTTG
CAAGGCGACCTGCTCGGGCCTACACGAGCGACGACAGCGTGGCATTTTTG
GTGGACTGCGTCTTGCAAGGCGACCTGCTCATCCGTTGTCGCCACCTCAG
TCCGGACGGGAGAAGGGTTTCCATGTTCCGTGCGGCGTTTCATACCGGGT
ACGTGCCTAGTGGCGTCTTGAATCCGTTGTCGCCACCTCAGTCCGGACGG
GAGAAGGGTTTCCATGTTCCGTGCGGCGTTTCATACCGGGTACGTGCCTA
GTGGCGTCTTGA
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