mRNA_H-elongata_contig13700.2607.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13700.2607.1
Unique NamemRNA_H-elongata_contig13700.2607.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Match: D7FQS1_ECTSI (Phosphatidate cytidylyltransferase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQS1_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 4.480e-101
Identity = 163/240 (67.92%), Postives = 195/240 (81.25%), Query Frame = 3
Query:    3 MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRVIQESKEISSAIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFRMYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYDQDTSPSARMALARTLPLALRRQLALDKGGPSGG-LANRGAPTAREVSRALASVVSRSSLRQGAKGLLTAGLLKSVSYSFAKVSRASAGRTCKQD 719
            +YYNALVP+ +T+HRGRSMKYGVIS +HLAEDLTDWTWLY AGRL KPVR+IQ + + S+ I GNL SA  A+LLLLPE FS +E + TVAGLSYTGDFRMYFGENPDKV+NIV++T   FQ+LY PA++ + G+ A G DCSSYDQD SP+ R+ALAR+LP A+R  L L +GG +G  LA  GAP   EVSRALA+VVSRSSLRQGAKGLLTAG+LKS SYS AKV++A AGR  +Q+
Sbjct:   99 LYYNALVPLSTTSHRGRSMKYGVISTKHLAEDLTDWTWLYTAGRLQKPVRIIQGNHKASAIIEGNLSSAAKASLLLLPERFSAQEFYTTVAGLSYTGDFRMYFGENPDKVKNIVSATLGRFQDLYAPALKGIPGMTATGSDCSSYDQDVSPTTRLALARSLPGAVRGLLPLGEGGSAGNKLATGGAPLTAEVSRALATVVSRSSLRQGAKGLLTAGVLKSASYSLAKVTQAIAGRRKRQE 338          
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Match: W7TRJ7_9STRA (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRJ7_9STRA)

HSP 1 Score: 185 bits (470), Expect = 2.170e-50
Identity = 111/255 (43.53%), Postives = 143/255 (56.08%), Query Frame = 3
Query:    3 MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRVIQESKEISSAIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFRMYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYDQDTSPSARMALARTLPLALRRQLAL----------------------DKGGPSGGLANRGAPTAREVSRALASVVSRSSLRQGAKGLLTAGLLKSVSYSFAKVSRASAG 701
            +YYN  +P+P   H  R MKYG+IS   L  DL DW W+Y AGR+ KPV++++  + ++ A R NL SAV AALLLLPESFS  +L   +AGLSY GDFRM FGENP KV+NIVTS    F  LY P +   S L A   D   + QD SP  R +  R LP+ALR+ L                        DK          G  T++ V  A+  VV+RSSL QG KG+ TAG+ K++ YS  K+++   G
Sbjct:  127 LYYNTALPVPG--HPNRVMKYGIISTHALRRDLVDWQWMYAAGRMQKPVKILKAYEALAEAQRMNLRSAVRAALLLLPESFSDFDLFTMIAGLSYRGDFRMTFGENPRKVKNIVTSNLPHFHELYSPVLATFSSLTAAAADKGRFSQDLSPRVRASHLRQLPMALRQFLVPRKLRDVMSSERSTKIVHSREEEDKALRDAWEQLSGKKTSKMVKLAIHKVVARSSLTQGFKGVFTAGVWKALVYSLHKMNKYRIG 379          
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Match: A0A1D1UUC8_RAMVA (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1UUC8_RAMVA)

HSP 1 Score: 170 bits (431), Expect = 2.390e-45
Identity = 107/244 (43.85%), Postives = 153/244 (62.70%), Query Frame = 3
Query:    3 MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRVIQESKEISS--AIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFRMYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYD----QDTSPSARMALARTLPLALRRQLALD--KGGPS-------GGLANRGAPTAREVSRALASVVSRSSLRQGAKGLLTAGLLKSVSYSFAKVSR 689
            +Y+N+LVP        R +KYGVI+   L +DL +WT LY++GRLHKPV V++++ +I+    +R NL +AV  +LLLLP++F+  +L  T+AGLSYTGDFRM FGE+ +KVRNIV      F +LYRP ++++  +     DCS+ +    QD SP+AR  L   LPL +R ++  +  KG  +        G+A+ GA   + VS A   +VS SS  Q AKG+ TAGL+KSV Y  AKV +
Sbjct:   93 VYFNSLVPFED-----RLVKYGVIATADLRKDLRNWTTLYISGRLHKPVLVVEDALDINQQDCLRSNLQAAVQTSLLLLPDAFTDEDLFLTIAGLSYTGDFRMKFGEDRNKVRNIVIPHMERFHDLYRPVLEKLQEV-----DCSANNRTFWQDGSPAARFTLLSDLPLNVRDKIVRNNLKGNRNKDISVILDGVAH-GADVGKSVSTACHDIVSYSSRWQSAKGIFTAGLIKSVKYGSAKVRK 325          
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Match: A0A5B7DKS5_PORTR (Phosphatidate cytidylyltransferase, mitochondrial n=5 Tax=Heterotremata TaxID=116706 RepID=A0A5B7DKS5_PORTR)

HSP 1 Score: 166 bits (420), Expect = 3.910e-44
Identity = 107/240 (44.58%), Postives = 142/240 (59.17%), Query Frame = 3
Query:    3 MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRVIQ---ESKEISSAIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFRMYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYDQDTSPSARMALARTLPLALRRQLALD--KGGPSGGLANRGAPTARE------VSRALASVVSRSSLRQGAKGLLTAGLLKSVSYSFAKVSR 689
            +Y+N L+P    TH G  MKYGVIS   L  DL DW  LYVAGRLHKPV ++    E +E+ +A++ NL  AV+ ALLLLPE FS  +L+ T+AGLSY GDFRMY GE+ +KVRNIV +    F+ LY P ++E+   V         +QDTSP AR+     LP  L+  L  +  K G S  L +     A +      + + +  +V  SSL Q  KG+LTAG  KSV YS++KV +
Sbjct:   56 IYFNTLIP----THEGM-MKYGVISHSSLVADLLDWDTLYVAGRLHKPVLMLHKAAEDEELHNALKLNLYFAVHTALLLLPELFSEEQLYMTLAGLSYAGDFRMYVGEDQNKVRNIVVAQIQEFRTLYMPVLKELEEYVILDTLRGMGEQDTSPPARLYHLSMLPKRLQLMLIREWNKDGRSRDLEDVLRAAAHDTDVEDVIHKGIQDIVKISSLTQSIKGILTAGATKSVRYSWSKVKK 290          
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Match: UPI001E677FB0 (phosphatidate cytidylyltransferase, mitochondrial-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E677FB0)

HSP 1 Score: 165 bits (417), Expect = 2.310e-43
Identity = 104/240 (43.33%), Postives = 145/240 (60.42%), Query Frame = 3
Query:    3 MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRVIQ---ESKEISSAIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFRMYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYDQDTSPSARMALARTLPLALRRQLALD--KGGPSGGL------ANRGAPTAREVSRALASVVSRSSLRQGAKGLLTAGLLKSVSYSFAKVSR 689
            +Y+N L+P    TH G  MKYGVIS  +L  DL DW  LYVAGRLHKPV ++    E +E+ SA++ NL +A++ ALLLLPESFS  +L+  +AGLSYTGDFRM+ GE+ DKVRNIV +    F++LY P ++E+   V         +QDTSP AR+     LP  L+  L  +  K   S  L      A     +A  + + +  +V   S+ Q  KG+LTAG +KS+ YS++K+ +
Sbjct:   86 IYFNTLIP----THEGM-MKYGVISRANLITDLLDWDTLYVAGRLHKPVLMLHQDSEDEELRSALKINLYAAIHTALLLLPESFSEDQLYLALAGLSYTGDFRMHVGEDQDKVRNIVQAQTQEFRSLYLPVLKELEEYVIVDQFKGMGEQDTSPPARLYHLSMLPKKLQLMLIKEWNKDRRSRDLEDVLRAAAHDNDSADVIVKGIQDIVKIPSVTQSLKGILTAGAIKSIRYSWSKLKK 320          
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Match: UPI00186501B4 (phosphatidate cytidylyltransferase, mitochondrial n=2 Tax=Elopomorpha TaxID=32521 RepID=UPI00186501B4)

HSP 1 Score: 164 bits (416), Expect = 4.240e-43
Identity = 105/265 (39.62%), Postives = 149/265 (56.23%), Query Frame = 3
Query:    3 MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRVI--QESKEISSAIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFRMYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYDQDTSPSARMALARTLPLALRRQLA--LDKGGPSGGLANRGAPTARE------VSRALASVVSRSSLRQGAKGLLTAGLLKSVSYSFAKVSRASAGRTCKQDG*MVWRRW-GWRSAAV 764
            +YYN LVP       GR +KYGVIS + L +DL  W  +YVAGRLHKPV+++   E+ ++ +A+ GNL SAV A+ L+LPESFS  EL   +AGLSY+GDFRM  GE+  KV NIV    + F+NLY   +QE   +V K    +  + D SP  +      LP  L++Q+   +D  G +  +       A++      V + ++S+V  SS+ Q AKG+ TAG++K+VSYS  K                +W+ W GWR   V
Sbjct:   96 VYYNTLVPT-----NGRIIKYGVISTDSLIDDLMHWKTMYVAGRLHKPVKILLQNENGKLRAALVGNLKSAVTASFLMLPESFSEEELFVQIAGLSYSGDFRMVIGEDKSKVLNIVKENLLHFRNLYSNILQECPQVVYKPQQ-AKLEVDKSPEGQFTQLMALPRTLQQQITRLVDPPGKNRDVEEILLQVAQDPDCGSVVQQGISSIVKSSSITQSAKGIATAGMMKTVSYSAKK----------------LWKMWKGWRRKPV 338          
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Match: M4BXI2_HYAAE (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BXI2_HYAAE)

HSP 1 Score: 163 bits (412), Expect = 5.820e-43
Identity = 95/233 (40.77%), Postives = 135/233 (57.94%), Query Frame = 3
Query:    3 MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRVIQESKEISSAIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFRMYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYDQ----DTSPSARMALARTLPLALRRQLALDKGGPSGGLANRGAPTAREVSRALASVVSRSSLRQGAKGLLTAGLLKSVSYSFAKVSR 689
            +YYN +VP+  T    R +KYGV+S   L +DLT+W  LY++GR+HKPV ++  ++ + +A   NL  A++ ALL LPE FS  +L+  +AG+SY GDFRM FGENP KVRNIV      FQ LYR  IQ    +       S  D       +P  R ++   LP  +RR+LA      + G+ +    T +++ R +AS+V RSS  Q  KG+ TAG +KS+ Y   K+ R
Sbjct:   66 VYYNTMVPLTGTLLGTRLIKYGVVSTRTLYDDLTNWKTLYLSGRMHKPVSILATNELMQAAASTNLSHALHYALLCLPEKFSEHDLYMKIAGISYLGDFRMTFGENPKKVRNIVDGNFRAFQELYRHKIQNSPFM---SRSISGVDMIVANSANPDVRQSIVEALPSNVRRRLAAKS--QASGVNDHQTVTKKQLQRVIASIVFRSSRSQSIKGIATAGGVKSILYVAQKLKR 293          
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Match: UPI0014024A93 (phosphatidate cytidylyltransferase, mitochondrial isoform X1 n=2 Tax=Amblyraja radiata TaxID=386614 RepID=UPI0014024A93)

HSP 1 Score: 164 bits (415), Expect = 6.210e-43
Identity = 106/267 (39.70%), Postives = 151/267 (56.55%), Query Frame = 3
Query:    3 MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRVI--QESKEISSAIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFRMYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYDQDTSPSARMALARTLPLALRRQLA--LDKGGPSGGLANRGAPTARE------VSRALASVVSRSSLRQGAKGLLTAGLLKSVSYSFAKVSRASAGRTCKQDG*MVWRRWGWRSAAVKIL 773
            +YYN LVP        R +KYGVIS   L EDL  W  LY+AGRLHKPV+++   E+ ++ +A+  NL SAV AA L+LPESF+  EL+  +AGLSY GDFRM  GE+  KV NIV++    FQ LY   +QE   +V K H     + D SP  ++ L   LP  L++++   +D+ G +  +       A++      +   +A +V  SS+ Q AKG+LTAG+ KS++YS  K+ +             +WR  GWR  AVK +
Sbjct:   94 IYYNTLVPCDE-----RIIKYGVISTGTLIEDLLHWKNLYIAGRLHKPVKILIQDENGKLQAALAKNLKSAVMAAFLMLPESFTEEELYVRIAGLSYYGDFRMIIGEDRSKVMNIVSANMENFQRLYNHILQECPQVVYKQH-LGKLELDKSPEGQLNLLMALPRTLQQEITRLVDQPGKNRDVEEILLQVAQDPDCGLIIQLCVAGIVKTSSITQSAKGILTAGMKKSITYSMKKMHK-------------MWR--GWRRKAVKSV 339          
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Match: UPI001C48F92D (phosphatidate cytidylyltransferase, mitochondrial-like isoform X1 n=1 Tax=Homarus americanus TaxID=6706 RepID=UPI001C48F92D)

HSP 1 Score: 163 bits (413), Expect = 8.760e-43
Identity = 103/240 (42.92%), Postives = 144/240 (60.00%), Query Frame = 3
Query:    3 MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRVIQESK---EISSAIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFRMYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYDQDTSPSARM----ALARTLPLALRRQLALDKGGPSGGLANRGAP----TAREVSRALASVVSRSSLRQGAKGLLTAGLLKSVSYSFAKVSR 689
            +Y+N L+P    TH G  +KYGVIS   L  DL DW  LY+AGRLHKPV ++ +     E+ SA++ NL SA++ ALLLLPESFS  +L+  +AG+SYTGDFRM+ GE+ +KVRNIV +    F+NLY P ++E+   V         +QDTSP AR+     L + L L L ++  +D+         R A      A  + + +  +V   SL Q  KGLLTAG +KSV YS++K+ +
Sbjct:   86 VYFNTLIP----THEGM-IKYGVISHTSLITDLLDWDTLYIAGRLHKPVLMLHKDSADDELRSALKINLYSALHTALLLLPESFSEDQLYLALAGVSYTGDFRMHVGEDQNKVRNIVQAQTQEFRNLYSPLLKELEEYVVLDQFKGMGEQDTSPPARLFHLSMLPKRLQLMLIKEFNVDRRSRDLEDVLRAAAHDTDCADVIVKGIQDIVMTPSLTQSLKGLLTAGAVKSVKYSYSKLKK 320          
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Match: UPI00195577A8 (phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI00195577A8)

HSP 1 Score: 163 bits (412), Expect = 1.600e-42
Identity = 104/243 (42.80%), Postives = 142/243 (58.44%), Query Frame = 3
Query:    3 MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRVI--QESKEISSAIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFRMYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYDQDTSPSARMALARTLPLALRRQLA--LDKGGPSGGLANRGAPTARE------VSRALASVVSRSSLRQGAKGLLTAGLLKSVSYSFAKVSRASAG 701
            +Y+N L+P+       R +KYGVIS E L +DL  W  LYVAGRLHKPVR++   ES ++ SA+ GNL SAV A+ L+LPESFS  EL   +AGLSY+GDFRM  GE+  KV NIV      F+ LY   +QE   +V K       + D SP  +      LP AL++ +   +D+ G +  +       A++      VS+ ++S+V  SSL Q AKG+ TAGL K+VSYS  K+ +   G
Sbjct:   96 VYFNTLIPVDD-----RLIKYGVISTEALIDDLLHWKTLYVAGRLHKPVRILLQNESGKLRSALVGNLKSAVTASFLMLPESFSEEELFLQIAGLSYSGDFRMVIGEDKAKVSNIVKDNMHDFRRLYSKILQECPQVVYKPQQ-GRLEVDKSPEGQFTQLMALPRALQQNITALVDRPGKNRDVEEILLQVAQDPDCGSVVSQGISSIVKTSSLTQSAKGIATAGLFKTVSYSARKLQKMWRG 332          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQS1_ECTSI4.480e-10167.92Phosphatidate cytidylyltransferase, mitochondrial ... [more]
W7TRJ7_9STRA2.170e-5043.53Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A1D1UUC8_RAMVA2.390e-4543.85Phosphatidate cytidylyltransferase, mitochondrial ... [more]
A0A5B7DKS5_PORTR3.910e-4444.58Phosphatidate cytidylyltransferase, mitochondrial ... [more]
UPI001E677FB02.310e-4343.33phosphatidate cytidylyltransferase, mitochondrial-... [more]
UPI00186501B44.240e-4339.62phosphatidate cytidylyltransferase, mitochondrial ... [more]
M4BXI2_HYAAE5.820e-4340.77Phosphatidate cytidylyltransferase, mitochondrial ... [more]
UPI0014024A936.210e-4339.70phosphatidate cytidylyltransferase, mitochondrial ... [more]
UPI001C48F92D8.760e-4342.92phosphatidate cytidylyltransferase, mitochondrial-... [more]
UPI00195577A81.600e-4242.80phosphatidate cytidylyltransferase, mitochondrial ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13700contigH-elongata_contig13700:1695..4258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.0
Seed ortholog evalue7.6e-84
Seed eggNOG ortholog2880.D7FQS1
Preferred nameTAMM41
KEGG koko:K17807,ko:K21121
GOsGO:0003674,GO:0003824,GO:0004605,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016020,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0019637,GO:0019866,GO:0019898,GO:0031090,GO:0031312,GO:0031314,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032048,GO:0032049,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0061024,GO:0070013,GO:0070567,GO:0071704,GO:0071840,GO:0090407,GO:1901576
EggNOG free text desc.phosphatidate cytidylyltransferase activity
EggNOG OGsKOG2986@1,KOG2986@2759
EC2.3.1.259
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial matrix Mmp37
Ec32 orthologEc-01_000290.1
Exons5
Model size1419
Cds size723
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929813.8748722-UTR-H-elongata_contig13700:1694..23881622929813.8748722-UTR-H-elongata_contig13700:1694..2388Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13700 1695..2388 -
1691679167.629317-UTR-H-elongata_contig13700:1694..23881691679167.629317-UTR-H-elongata_contig13700:1694..2388Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13700 1695..2388 -
1622929814.0139081-UTR-H-elongata_contig13700:4256..42581622929814.0139081-UTR-H-elongata_contig13700:4256..4258Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13700 4257..4258 -
1691679167.701865-UTR-H-elongata_contig13700:4256..42581691679167.701865-UTR-H-elongata_contig13700:4256..4258Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13700 4257..4258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929813.9151714-CDS-H-elongata_contig13700:2388..25911622929813.9151714-CDS-H-elongata_contig13700:2388..2591Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13700 2389..2591 -
1691679167.6410944-CDS-H-elongata_contig13700:2388..25911691679167.6410944-CDS-H-elongata_contig13700:2388..2591Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13700 2389..2591 -
1622929813.94355-CDS-H-elongata_contig13700:2960..30901622929813.94355-CDS-H-elongata_contig13700:2960..3090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13700 2961..3090 -
1691679167.6571245-CDS-H-elongata_contig13700:2960..30901691679167.6571245-CDS-H-elongata_contig13700:2960..3090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13700 2961..3090 -
1622929813.9610133-CDS-H-elongata_contig13700:3437..35381622929813.9610133-CDS-H-elongata_contig13700:3437..3538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13700 3438..3538 -
1691679167.672418-CDS-H-elongata_contig13700:3437..35381691679167.672418-CDS-H-elongata_contig13700:3437..3538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13700 3438..3538 -
1622929813.9827569-CDS-H-elongata_contig13700:3757..39151622929813.9827569-CDS-H-elongata_contig13700:3757..3915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13700 3758..3915 -
1691679167.6815183-CDS-H-elongata_contig13700:3757..39151691679167.6815183-CDS-H-elongata_contig13700:3757..3915Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13700 3758..3915 -
1622929814.0014195-CDS-H-elongata_contig13700:4125..42561622929814.0014195-CDS-H-elongata_contig13700:4125..4256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13700 4126..4256 -
1691679167.6905053-CDS-H-elongata_contig13700:4125..42561691679167.6905053-CDS-H-elongata_contig13700:4125..4256Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13700 4126..4256 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13700.2607.1prot_H-elongata_contig13700.2607.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13700 2389..4256 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13700.2607.1

>prot_H-elongata_contig13700.2607.1 ID=prot_H-elongata_contig13700.2607.1|Name=mRNA_H-elongata_contig13700.2607.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=241bp
MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVR
VIQESKEISSAIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFR
MYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYDQDTS
PSARMALARTLPLALRRQLALDKGGPSGGLANRGAPTAREVSRALASVVS
RSSLRQGAKGLLTAGLLKSVSYSFAKVSRASAGRTCKQDG*
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mRNA from alignment at H-elongata_contig13700:1695..4258-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13700.2607.1 ID=mRNA_H-elongata_contig13700.2607.1|Name=mRNA_H-elongata_contig13700.2607.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2564bp|location=Sequence derived from alignment at H-elongata_contig13700:1695..4258- (Himanthalia elongata Himel1 dioecious)
AGATGTACTACAACGCTCTTGTACCCATGCCATCAACTACCCATCGAGGG CGGTCGATGAAGTACGGCGTCATCAGCATGGAGCATCTAGCAGAAGATCT TACCGACTGGACTTGGCTCTACGTCGCCGGAAGGTAGACACAAATCGCTC TTCCATCGTAGATCTGCCACACTCTTGCTGTGGCCTCCCTAGTCTCTCCT GGTGGAGATTTGTGGCCCTTCCCGTAGCCAATCGTGCCCGACGACGCACA CGAGGAACATTGGTGCCCTTACCGCCACAGGGAGGCTTCAATCTCAACCT CTCGTCTGATGAAATTTTCCTTCATGCCGTGTGCTGCCGGTAGATTACAT AAGCCCGTACGAGTCATCCAAGAAAGCAAGGAGATTTCCTCGGCCATTCG AGGAAACCTGGTGTCCGCGGTCAACGCCGCTCTCCTCTTGCTACCGGAGA GCTTTAGTGGTCGGGAGTTGCACGAAACCGTTGCGGGTCTTTCTTACACA GGTGCGCCGGGTGAACCTAACATCGCTTTTGATGGTAGACGAATTTGTCT CTCTCCGCGATGCGCGGTCTTTTTTAAGGCTGCAACACAAGCATATACGG AGGATAGTCGCACTGATTTGTGCCGAGAAGCCGTTATTTCACCACTGCTG TAGTCGTAAAAGTGGGTAGACAGCCTTGCGTAACCACGCACCGCTTTCGC TCTCGACCCCCAATGCCTAGGCGACTTTAGGATGTATTTTGGAGAGAACC CTGACAAAGTTCGCAACATCGTCACCTCGACCCCGATCGGGTTTCAGAAC CTCTACCGTCCTGCAATTCAGGTGAGAGATCGACTTAACCCTTTTGGAGC TGGATTTCAACTTTTATTATACATTTAGTATGTAAAAAACAGATCGAGTT CCGTAGGACTTAACAACCTCTGGGCCGAACGCAAGACTGCACCTCTCACG GCGCTAAGAAGGTGTGGATGTTCAGAGGGTTGGAAAGAGTTCAAGGTTTT TTAATAAAAATATCTAGCGCCTTTGGGACCGGACAGAAAAAAACAGCCTA GGTCCACGTTATCGCATTGGTGCTGAGGGAAGTTAGGGGCGCGGCGTCTG TCTGCTGAGCGCTCCAGCGTACTAACTATGTCGTGACAAGATTGCGACTG CTCGCCGTTGCTCCGCAGGAGGTCTCGGGCTTGGTCGCGAAGGGACACGA CTGCTCTTCGTACGACCAGGATACATCTCCAAGTGCGCGGATGGCGTTAG CGAGGACACTACCGCTTGCCCTACGGAGACAGCTGGCACTAGACAAAGGT ATACATTTTGCTATATTTGCTACAATATTGCAGCGGAGGGGGGGGGGGGG GGGAGGGGGAGGTATGGTGGTAGGCCCCCGGTTTCCTTCACAAAAGATAA CTTTCCCCCCTGGNNNNNNNNNNGGGGTTGGCTGTTTGTTGCTTTCTGTT GTCTCTGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGAAGAGGGAGGTG AAGTGGTAGGTCCACGGTAGCTCTCCAAAAATGTAACTGACCCTCGTAGG AAGCTAGCTTCTCACGAAAATATGTTGACCTTTACGGTGCAGTATATTCC CTACACGCTTCTCAAGAATATACCGTGACCAAAGCCGCCTTTGCGCTACA CTATATTTTCTCTTCAGGCGGACCAAGCGGTGGCCTTGCGAATCGTGGGG CACCAACGGCGAGGGAAGTTTCGCGAGCACTCGCGTCCGTGGTTTCGAGA TCAAGCCTGCGCCAGGGAGCGAAGGGGCTCCTGACTGCTGGGCTGCTCAA ATCCGTCTCGTATTCCTTTGCAAAGGTTTCGCGGGCCTCTGCCGGCCGGA CGTGTAAGCAAGATGGTTGAATGGTGTGGAGGAGGTGGGGATGGAGATCG GCCGCTGTTAAAATTCTGGACCTGGACACACAGTGGGAGCACCTGGTCTT CGAGCGGCAGGACTCATGAGTAGAGCAGGGGTTAAACCGGGCATATAAAA TGGGAGCAGGGAAGACGAAGCGCGTCTGCGTCACGCTCCACCTGCAGCCT CACGCCACATATTTCGCGCCCAGGTGTCATCTAGACGTTGATGCTCACTT GATGCTGCTTAGGCGCGTCGCCCGCACGGAAATTCTCTTTCTGGCGTTGA TTCGGCGTTGGACCCCATCTTGCGTCGCCATCAAAGATGGCCCGTCTTGA CGTGCCCGCGGAGTTCCCGTGGACTACTTCGTCGCTCGCAAGTTTTTAGC CTACGCGAGTACATCATGAGTAGCTTTGTTCATAAAGCTTCTTGCAAGTG AATATTGGCTCTTGCTGCCAACCTTCGCCGTATATCGCGGAGAGCGGTCT ACGCCGTATAAGGCTAGATGGGAGAACCCCTTAAGGCTCTCCTCGATTCG ACATTGCGTTCGATTTCAGCGGGGAAATTTTTCGCTCCTGGCGTTTCGCG AGGAAATTAAAAAGGCTGTAGCGCCGGACCGCGCGCTCTCGGGCGACTGC TGAATTTTTCCCGGCCGCGTCTGGACTGGACCAGCCTTTGTTAACATTAT CGGAGCTATCTATC
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Coding sequence (CDS) from alignment at H-elongata_contig13700:1695..4258-

>mRNA_H-elongata_contig13700.2607.1 ID=mRNA_H-elongata_contig13700.2607.1|Name=mRNA_H-elongata_contig13700.2607.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1446bp|location=Sequence derived from alignment at H-elongata_contig13700:1695..4258- (Himanthalia elongata Himel1 dioecious)
ATGTACTACAACGCTCTTGTACCCATGCCATCAACTACCCATCGAGGGCG
GTCGATGAAGTACGGCGTCATCAGCATGGAGCATCTAGCAGAAGATCTTA
CCGACTGGACTTGGCTCTACGTCGCCGGAAGATGTACTACAACGCTCTTG
TACCCATGCCATCAACTACCCATCGAGGGCGGTCGATGAAGTACGGCGTC
ATCAGCATGGAGCATCTAGCAGAAGATCTTACCGACTGGACTTGGCTCTA
CGTCGCCGGAAGATTACATAAGCCCGTACGAGTCATCCAAGAAAGCAAGG
AGATTTCCTCGGCCATTCGAGGAAACCTGGTGTCCGCGGTCAACGCCGCT
CTCCTCTTGCTACCGGAGAGCTTTAGTGGTCGGGAGTTGCACGAAACCGT
TGCGGGTCTTTCTTACACAGATTACATAAGCCCGTACGAGTCATCCAAGA
AAGCAAGGAGATTTCCTCGGCCATTCGAGGAAACCTGGTGTCCGCGGTCA
ACGCCGCTCTCCTCTTGCTACCGGAGAGCTTTAGTGGTCGGGAGTTGCAC
GAAACCGTTGCGGGTCTTTCTTACACAGGCGACTTTAGGATGTATTTTGG
AGAGAACCCTGACAAAGTTCGCAACATCGTCACCTCGACCCCGATCGGGT
TTCAGAACCTCTACCGTCCTGCAATTCAGGCGACTTTAGGATGTATTTTG
GAGAGAACCCTGACAAAGTTCGCAACATCGTCACCTCGACCCCGATCGGG
TTTCAGAACCTCTACCGTCCTGCAATTCAGGAGGTCTCGGGCTTGGTCGC
GAAGGGACACGACTGCTCTTCGTACGACCAGGATACATCTCCAAGTGCGC
GGATGGCGTTAGCGAGGACACTACCGCTTGCCCTACGGAGACAGCTGGCA
CTAGACAAAGGAGGTCTCGGGCTTGGTCGCGAAGGGACACGACTGCTCTT
CGTACGACCAGGATACATCTCCAAGTGCGCGGATGGCGTTAGCGAGGACA
CTACCGCTTGCCCTACGGAGACAGCTGGCACTAGACAAAGGCGGACCAAG
CGGTGGCCTTGCGAATCGTGGGGCACCAACGGCGAGGGAAGTTTCGCGAG
CACTCGCGTCCGTGGTTTCGAGATCAAGCCTGCGCCAGGGAGCGAAGGGG
CTCCTGACTGCTGGGCTGCTCAAATCCGTCTCGTATTCCTTTGCAAAGGT
TTCGCGGGCCTCTGCCGGCCGGACGTGTAAGCAAGATGGTTGAGCGGACC
AAGCGGTGGCCTTGCGAATCGTGGGGCACCAACGGCGAGGGAAGTTTCGC
GAGCACTCGCGTCCGTGGTTTCGAGATCAAGCCTGCGCCAGGGAGCGAAG
GGGCTCCTGACTGCTGGGCTGCTCAAATCCGTCTCGTATTCCTTTGCAAA
GGTTTCGCGGGCCTCTGCCGGCCGGACGTGTAAGCAAGATGGTTGA
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