mRNA_H-elongata_contig13700.2607.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Match: D7FQS1_ECTSI (Phosphatidate cytidylyltransferase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQS1_ECTSI) HSP 1 Score: 315 bits (807), Expect = 4.480e-101 Identity = 163/240 (67.92%), Postives = 195/240 (81.25%), Query Frame = 3
Query: 3 MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRVIQESKEISSAIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFRMYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYDQDTSPSARMALARTLPLALRRQLALDKGGPSGG-LANRGAPTAREVSRALASVVSRSSLRQGAKGLLTAGLLKSVSYSFAKVSRASAGRTCKQD 719
+YYNALVP+ +T+HRGRSMKYGVIS +HLAEDLTDWTWLY AGRL KPVR+IQ + + S+ I GNL SA A+LLLLPE FS +E + TVAGLSYTGDFRMYFGENPDKV+NIV++T FQ+LY PA++ + G+ A G DCSSYDQD SP+ R+ALAR+LP A+R L L +GG +G LA GAP EVSRALA+VVSRSSLRQGAKGLLTAG+LKS SYS AKV++A AGR +Q+
Sbjct: 99 LYYNALVPLSTTSHRGRSMKYGVISTKHLAEDLTDWTWLYTAGRLQKPVRIIQGNHKASAIIEGNLSSAAKASLLLLPERFSAQEFYTTVAGLSYTGDFRMYFGENPDKVKNIVSATLGRFQDLYAPALKGIPGMTATGSDCSSYDQDVSPTTRLALARSLPGAVRGLLPLGEGGSAGNKLATGGAPLTAEVSRALATVVSRSSLRQGAKGLLTAGVLKSASYSLAKVTQAIAGRRKRQE 338
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Match: W7TRJ7_9STRA (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRJ7_9STRA) HSP 1 Score: 185 bits (470), Expect = 2.170e-50 Identity = 111/255 (43.53%), Postives = 143/255 (56.08%), Query Frame = 3
Query: 3 MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRVIQESKEISSAIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFRMYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYDQDTSPSARMALARTLPLALRRQLAL----------------------DKGGPSGGLANRGAPTAREVSRALASVVSRSSLRQGAKGLLTAGLLKSVSYSFAKVSRASAG 701
+YYN +P+P H R MKYG+IS L DL DW W+Y AGR+ KPV++++ + ++ A R NL SAV AALLLLPESFS +L +AGLSY GDFRM FGENP KV+NIVTS F LY P + S L A D + QD SP R + R LP+ALR+ L DK G T++ V A+ VV+RSSL QG KG+ TAG+ K++ YS K+++ G
Sbjct: 127 LYYNTALPVPG--HPNRVMKYGIISTHALRRDLVDWQWMYAAGRMQKPVKILKAYEALAEAQRMNLRSAVRAALLLLPESFSDFDLFTMIAGLSYRGDFRMTFGENPRKVKNIVTSNLPHFHELYSPVLATFSSLTAAAADKGRFSQDLSPRVRASHLRQLPMALRQFLVPRKLRDVMSSERSTKIVHSREEEDKALRDAWEQLSGKKTSKMVKLAIHKVVARSSLTQGFKGVFTAGVWKALVYSLHKMNKYRIG 379
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Match: A0A1D1UUC8_RAMVA (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1UUC8_RAMVA) HSP 1 Score: 170 bits (431), Expect = 2.390e-45 Identity = 107/244 (43.85%), Postives = 153/244 (62.70%), Query Frame = 3
Query: 3 MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRVIQESKEISS--AIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFRMYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYD----QDTSPSARMALARTLPLALRRQLALD--KGGPS-------GGLANRGAPTAREVSRALASVVSRSSLRQGAKGLLTAGLLKSVSYSFAKVSR 689
+Y+N+LVP R +KYGVI+ L +DL +WT LY++GRLHKPV V++++ +I+ +R NL +AV +LLLLP++F+ +L T+AGLSYTGDFRM FGE+ +KVRNIV F +LYRP ++++ + DCS+ + QD SP+AR L LPL +R ++ + KG + G+A+ GA + VS A +VS SS Q AKG+ TAGL+KSV Y AKV +
Sbjct: 93 VYFNSLVPFED-----RLVKYGVIATADLRKDLRNWTTLYISGRLHKPVLVVEDALDINQQDCLRSNLQAAVQTSLLLLPDAFTDEDLFLTIAGLSYTGDFRMKFGEDRNKVRNIVIPHMERFHDLYRPVLEKLQEV-----DCSANNRTFWQDGSPAARFTLLSDLPLNVRDKIVRNNLKGNRNKDISVILDGVAH-GADVGKSVSTACHDIVSYSSRWQSAKGIFTAGLIKSVKYGSAKVRK 325
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Match: A0A5B7DKS5_PORTR (Phosphatidate cytidylyltransferase, mitochondrial n=5 Tax=Heterotremata TaxID=116706 RepID=A0A5B7DKS5_PORTR) HSP 1 Score: 166 bits (420), Expect = 3.910e-44 Identity = 107/240 (44.58%), Postives = 142/240 (59.17%), Query Frame = 3
Query: 3 MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRVIQ---ESKEISSAIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFRMYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYDQDTSPSARMALARTLPLALRRQLALD--KGGPSGGLANRGAPTARE------VSRALASVVSRSSLRQGAKGLLTAGLLKSVSYSFAKVSR 689
+Y+N L+P TH G MKYGVIS L DL DW LYVAGRLHKPV ++ E +E+ +A++ NL AV+ ALLLLPE FS +L+ T+AGLSY GDFRMY GE+ +KVRNIV + F+ LY P ++E+ V +QDTSP AR+ LP L+ L + K G S L + A + + + + +V SSL Q KG+LTAG KSV YS++KV +
Sbjct: 56 IYFNTLIP----THEGM-MKYGVISHSSLVADLLDWDTLYVAGRLHKPVLMLHKAAEDEELHNALKLNLYFAVHTALLLLPELFSEEQLYMTLAGLSYAGDFRMYVGEDQNKVRNIVVAQIQEFRTLYMPVLKELEEYVILDTLRGMGEQDTSPPARLYHLSMLPKRLQLMLIREWNKDGRSRDLEDVLRAAAHDTDVEDVIHKGIQDIVKISSLTQSIKGILTAGATKSVRYSWSKVKK 290
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Match: UPI001E677FB0 (phosphatidate cytidylyltransferase, mitochondrial-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E677FB0) HSP 1 Score: 165 bits (417), Expect = 2.310e-43 Identity = 104/240 (43.33%), Postives = 145/240 (60.42%), Query Frame = 3
Query: 3 MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRVIQ---ESKEISSAIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFRMYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYDQDTSPSARMALARTLPLALRRQLALD--KGGPSGGL------ANRGAPTAREVSRALASVVSRSSLRQGAKGLLTAGLLKSVSYSFAKVSR 689
+Y+N L+P TH G MKYGVIS +L DL DW LYVAGRLHKPV ++ E +E+ SA++ NL +A++ ALLLLPESFS +L+ +AGLSYTGDFRM+ GE+ DKVRNIV + F++LY P ++E+ V +QDTSP AR+ LP L+ L + K S L A +A + + + +V S+ Q KG+LTAG +KS+ YS++K+ +
Sbjct: 86 IYFNTLIP----THEGM-MKYGVISRANLITDLLDWDTLYVAGRLHKPVLMLHQDSEDEELRSALKINLYAAIHTALLLLPESFSEDQLYLALAGLSYTGDFRMHVGEDQDKVRNIVQAQTQEFRSLYLPVLKELEEYVIVDQFKGMGEQDTSPPARLYHLSMLPKKLQLMLIKEWNKDRRSRDLEDVLRAAAHDNDSADVIVKGIQDIVKIPSVTQSLKGILTAGAIKSIRYSWSKLKK 320
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Match: UPI00186501B4 (phosphatidate cytidylyltransferase, mitochondrial n=2 Tax=Elopomorpha TaxID=32521 RepID=UPI00186501B4) HSP 1 Score: 164 bits (416), Expect = 4.240e-43 Identity = 105/265 (39.62%), Postives = 149/265 (56.23%), Query Frame = 3
Query: 3 MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRVI--QESKEISSAIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFRMYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYDQDTSPSARMALARTLPLALRRQLA--LDKGGPSGGLANRGAPTARE------VSRALASVVSRSSLRQGAKGLLTAGLLKSVSYSFAKVSRASAGRTCKQDG*MVWRRW-GWRSAAV 764
+YYN LVP GR +KYGVIS + L +DL W +YVAGRLHKPV+++ E+ ++ +A+ GNL SAV A+ L+LPESFS EL +AGLSY+GDFRM GE+ KV NIV + F+NLY +QE +V K + + D SP + LP L++Q+ +D G + + A++ V + ++S+V SS+ Q AKG+ TAG++K+VSYS K +W+ W GWR V
Sbjct: 96 VYYNTLVPT-----NGRIIKYGVISTDSLIDDLMHWKTMYVAGRLHKPVKILLQNENGKLRAALVGNLKSAVTASFLMLPESFSEEELFVQIAGLSYSGDFRMVIGEDKSKVLNIVKENLLHFRNLYSNILQECPQVVYKPQQ-AKLEVDKSPEGQFTQLMALPRTLQQQITRLVDPPGKNRDVEEILLQVAQDPDCGSVVQQGISSIVKSSSITQSAKGIATAGMMKTVSYSAKK----------------LWKMWKGWRRKPV 338
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Match: M4BXI2_HYAAE (Phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BXI2_HYAAE) HSP 1 Score: 163 bits (412), Expect = 5.820e-43 Identity = 95/233 (40.77%), Postives = 135/233 (57.94%), Query Frame = 3
Query: 3 MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRVIQESKEISSAIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFRMYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYDQ----DTSPSARMALARTLPLALRRQLALDKGGPSGGLANRGAPTAREVSRALASVVSRSSLRQGAKGLLTAGLLKSVSYSFAKVSR 689
+YYN +VP+ T R +KYGV+S L +DLT+W LY++GR+HKPV ++ ++ + +A NL A++ ALL LPE FS +L+ +AG+SY GDFRM FGENP KVRNIV FQ LYR IQ + S D +P R ++ LP +RR+LA + G+ + T +++ R +AS+V RSS Q KG+ TAG +KS+ Y K+ R
Sbjct: 66 VYYNTMVPLTGTLLGTRLIKYGVVSTRTLYDDLTNWKTLYLSGRMHKPVSILATNELMQAAASTNLSHALHYALLCLPEKFSEHDLYMKIAGISYLGDFRMTFGENPKKVRNIVDGNFRAFQELYRHKIQNSPFM---SRSISGVDMIVANSANPDVRQSIVEALPSNVRRRLAAKS--QASGVNDHQTVTKKQLQRVIASIVFRSSRSQSIKGIATAGGVKSILYVAQKLKR 293
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Match: UPI0014024A93 (phosphatidate cytidylyltransferase, mitochondrial isoform X1 n=2 Tax=Amblyraja radiata TaxID=386614 RepID=UPI0014024A93) HSP 1 Score: 164 bits (415), Expect = 6.210e-43 Identity = 106/267 (39.70%), Postives = 151/267 (56.55%), Query Frame = 3
Query: 3 MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRVI--QESKEISSAIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFRMYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYDQDTSPSARMALARTLPLALRRQLA--LDKGGPSGGLANRGAPTARE------VSRALASVVSRSSLRQGAKGLLTAGLLKSVSYSFAKVSRASAGRTCKQDG*MVWRRWGWRSAAVKIL 773
+YYN LVP R +KYGVIS L EDL W LY+AGRLHKPV+++ E+ ++ +A+ NL SAV AA L+LPESF+ EL+ +AGLSY GDFRM GE+ KV NIV++ FQ LY +QE +V K H + D SP ++ L LP L++++ +D+ G + + A++ + +A +V SS+ Q AKG+LTAG+ KS++YS K+ + +WR GWR AVK +
Sbjct: 94 IYYNTLVPCDE-----RIIKYGVISTGTLIEDLLHWKNLYIAGRLHKPVKILIQDENGKLQAALAKNLKSAVMAAFLMLPESFTEEELYVRIAGLSYYGDFRMIIGEDRSKVMNIVSANMENFQRLYNHILQECPQVVYKQH-LGKLELDKSPEGQLNLLMALPRTLQQEITRLVDQPGKNRDVEEILLQVAQDPDCGLIIQLCVAGIVKTSSITQSAKGILTAGMKKSITYSMKKMHK-------------MWR--GWRRKAVKSV 339
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Match: UPI001C48F92D (phosphatidate cytidylyltransferase, mitochondrial-like isoform X1 n=1 Tax=Homarus americanus TaxID=6706 RepID=UPI001C48F92D) HSP 1 Score: 163 bits (413), Expect = 8.760e-43 Identity = 103/240 (42.92%), Postives = 144/240 (60.00%), Query Frame = 3
Query: 3 MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRVIQESK---EISSAIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFRMYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYDQDTSPSARM----ALARTLPLALRRQLALDKGGPSGGLANRGAP----TAREVSRALASVVSRSSLRQGAKGLLTAGLLKSVSYSFAKVSR 689
+Y+N L+P TH G +KYGVIS L DL DW LY+AGRLHKPV ++ + E+ SA++ NL SA++ ALLLLPESFS +L+ +AG+SYTGDFRM+ GE+ +KVRNIV + F+NLY P ++E+ V +QDTSP AR+ L + L L L ++ +D+ R A A + + + +V SL Q KGLLTAG +KSV YS++K+ +
Sbjct: 86 VYFNTLIP----THEGM-IKYGVISHTSLITDLLDWDTLYIAGRLHKPVLMLHKDSADDELRSALKINLYSALHTALLLLPESFSEDQLYLALAGVSYTGDFRMHVGEDQNKVRNIVQAQTQEFRNLYSPLLKELEEYVVLDQFKGMGEQDTSPPARLFHLSMLPKRLQLMLIKEFNVDRRSRDLEDVLRAAAHDTDCADVIVKGIQDIVMTPSLTQSLKGLLTAGAVKSVKYSYSKLKK 320
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Match: UPI00195577A8 (phosphatidate cytidylyltransferase, mitochondrial n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI00195577A8) HSP 1 Score: 163 bits (412), Expect = 1.600e-42 Identity = 104/243 (42.80%), Postives = 142/243 (58.44%), Query Frame = 3
Query: 3 MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRVI--QESKEISSAIRGNLVSAVNAALLLLPESFSGRELHETVAGLSYTGDFRMYFGENPDKVRNIVTSTPIGFQNLYRPAIQEVSGLVAKGHDCSSYDQDTSPSARMALARTLPLALRRQLA--LDKGGPSGGLANRGAPTARE------VSRALASVVSRSSLRQGAKGLLTAGLLKSVSYSFAKVSRASAG 701
+Y+N L+P+ R +KYGVIS E L +DL W LYVAGRLHKPVR++ ES ++ SA+ GNL SAV A+ L+LPESFS EL +AGLSY+GDFRM GE+ KV NIV F+ LY +QE +V K + D SP + LP AL++ + +D+ G + + A++ VS+ ++S+V SSL Q AKG+ TAGL K+VSYS K+ + G
Sbjct: 96 VYFNTLIPVDD-----RLIKYGVISTEALIDDLLHWKTLYVAGRLHKPVRILLQNESGKLRSALVGNLKSAVTASFLMLPESFSEEELFLQIAGLSYSGDFRMVIGEDKAKVSNIVKDNMHDFRRLYSKILQECPQVVYKPQQ-GRLEVDKSPEGQFTQLMALPRALQQNITALVDRPGKNRDVEEILLQVAQDPDCGSVVSQGISSIVKTSSLTQSAKGIATAGLFKTVSYSARKLQKMWRG 332 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13700.2607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13700.2607.1 >prot_H-elongata_contig13700.2607.1 ID=prot_H-elongata_contig13700.2607.1|Name=mRNA_H-elongata_contig13700.2607.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=241bp MYYNALVPMPSTTHRGRSMKYGVISMEHLAEDLTDWTWLYVAGRLHKPVRback to top mRNA from alignment at H-elongata_contig13700:1695..4258- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13700.2607.1 ID=mRNA_H-elongata_contig13700.2607.1|Name=mRNA_H-elongata_contig13700.2607.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2564bp|location=Sequence derived from alignment at H-elongata_contig13700:1695..4258- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13700:1695..4258- >mRNA_H-elongata_contig13700.2607.1 ID=mRNA_H-elongata_contig13700.2607.1|Name=mRNA_H-elongata_contig13700.2607.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1446bp|location=Sequence derived from alignment at H-elongata_contig13700:1695..4258- (Himanthalia elongata Himel1 dioecious)back to top |