mRNA_H-elongata_contig136925.2602.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136925.2602.1
Unique NamemRNA_H-elongata_contig136925.2602.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig136925.2602.1 vs. uniprot
Match: A0A6H5L296_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L296_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 8.900e-9
Identity = 31/68 (45.59%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:   31 GFQRSQAAPCVFRWILHGILVVVIVVYVDDLLVASATKRDEKQAVRDLCSCFPIKDLGEASYYLRCHI 234
            GF++ +  PCVFR ++ G +V +IV+YVDD+LVA A + D ++    L   FP+KDLGE ++Y  C I
Sbjct:   34 GFEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVA-ADEGDREELFASLNKKFPVKDLGECTWYDGCAI 100
[Close]
BLAST of mRNA_H-elongata_contig136925.2602.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.440e-8
Identity = 30/72 (41.67%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:   19 LEAKGFQRSQAAPCVFRWILHGILVVVIVVYVDDLLVASATKRDEKQAVRDLCSCFPIKDLGEASYYLRCHI 234
            L   GF++ +A PCVFR ++  ++V++IV+YVDD+LVA + + D ++ +  L   FP K+LGE  ++ RC I
Sbjct:  328 LVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVAESDE-DCEELLASLKKKFPTKNLGECEWFHRCAI 398
[Close]
BLAST of mRNA_H-elongata_contig136925.2602.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 3.250e-8
Identity = 30/68 (44.12%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:   31 GFQRSQAAPCVFRWILHGILVVVIVVYVDDLLVASATKRDEKQAVRDLCSCFPIKDLGEASYYLRCHI 234
            G+++ +  PCVFR ++ G +V +IV+YVDD+LVA A + D ++    L   FP+KDLGE ++Y  C I
Sbjct:  103 GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVA-ADEGDREELFASLNKKFPVKDLGECTWYDGCAI 169
[Close]
BLAST of mRNA_H-elongata_contig136925.2602.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.450e-8
Identity = 27/72 (37.50%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   19 LEAKGFQRSQAAPCVFRWILHGILVVVIVVYVDDLLVASATKRDEKQAVRDLCSCFPIKDLGEASYYLRCHI 234
            L + G+++ +  PC+FR ++ G +V +IV+YVDD+++ SAT+ + ++ +  L   FP+KDLG+ ++Y  C I
Sbjct:   70 LISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAI 140
[Close]
BLAST of mRNA_H-elongata_contig136925.2602.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.600e-8
Identity = 27/72 (37.50%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   19 LEAKGFQRSQAAPCVFRWILHGILVVVIVVYVDDLLVASATKRDEKQAVRDLCSCFPIKDLGEASYYLRCHI 234
            L + G+++ +  PC+FR ++ G +V +IV+YVDD+++ SAT+ + ++ +  L   FP+KDLG+ ++Y  C I
Sbjct:  283 LISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAI 353
[Close]
BLAST of mRNA_H-elongata_contig136925.2602.1 vs. uniprot
Match: A0A6H5JHI8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI8_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.600e-8
Identity = 27/72 (37.50%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   19 LEAKGFQRSQAAPCVFRWILHGILVVVIVVYVDDLLVASATKRDEKQAVRDLCSCFPIKDLGEASYYLRCHI 234
            L + G+++ +  PC+FR ++ G +V +IV+YVDD+++ SAT+ + ++ +  L   FP+KDLG+ ++Y  C I
Sbjct:  539 LISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAI 609
[Close]
BLAST of mRNA_H-elongata_contig136925.2602.1 vs. uniprot
Match: A0A6H5L6D6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D6_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.620e-8
Identity = 27/72 (37.50%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   19 LEAKGFQRSQAAPCVFRWILHGILVVVIVVYVDDLLVASATKRDEKQAVRDLCSCFPIKDLGEASYYLRCHI 234
            L + G+++ +  PC+FR ++ G +V +IV+YVDD+++ SAT+ + ++ +  L   FP+KDLG+ ++Y  C I
Sbjct:  463 LISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAI 533
[Close]
BLAST of mRNA_H-elongata_contig136925.2602.1 vs. uniprot
Match: A0A6H5K9E2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E2_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.660e-8
Identity = 27/72 (37.50%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   19 LEAKGFQRSQAAPCVFRWILHGILVVVIVVYVDDLLVASATKRDEKQAVRDLCSCFPIKDLGEASYYLRCHI 234
            L + G+++ +  PC+FR ++ G +V +IV+YVDD+++ SAT+ + ++ +  L   FP+KDLG+ ++Y  C I
Sbjct:  716 LISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAI 786
[Close]
BLAST of mRNA_H-elongata_contig136925.2602.1 vs. uniprot
Match: A0A6H5K8K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K4_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.690e-8
Identity = 28/67 (41.79%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:   19 LEAKGFQRSQAAPCVFRWILHGILVVVIVVYVDDLLVASATKRDEKQAVRDLCSCFPIKDLGEASYY 219
            L A G+++ +A PCVFR ++ G +V +IV+YVDD+L+  A++++ ++ +  L   FP+KDLGE ++Y
Sbjct:  965 LIANGYEQCRADPCVFRRMVDGEVVGLIVIYVDDILLV-ASEQERQELLASLQKKFPVKDLGECTWY 1030
[Close]
BLAST of mRNA_H-elongata_contig136925.2602.1 vs. uniprot
Match: A0A6H5JRY9_9PHAE (CCHC-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 4.700e-8
Identity = 27/72 (37.50%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   19 LEAKGFQRSQAAPCVFRWILHGILVVVIVVYVDDLLVASATKRDEKQAVRDLCSCFPIKDLGEASYYLRCHI 234
            L + G+++ +  PC+FR ++ G +V +IV+YVDD+++ SAT+ + ++ +  L   FP+KDLG+ ++Y  C I
Sbjct: 1178 LISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIML-SATEEEREELLASLQKRFPVKDLGDCTWYDGCAI 1248
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136925.2602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L296_9PHAE8.900e-945.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLS1_9PHAE2.440e-841.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXU1_9PHAE3.250e-844.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCN6_9PHAE4.450e-837.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR39_9PHAE4.600e-837.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JHI8_9PHAE4.600e-837.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6D6_9PHAE4.620e-837.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9E2_9PHAE4.660e-837.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K8K4_9PHAE4.690e-841.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRY9_9PHAE4.700e-837.50CCHC-type domain-containing protein n=4 Tax=Ectoca... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136925contigH-elongata_contig136925:1100..1333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929813.2854886-CDS-H-elongata_contig136925:1099..13331622929813.2854886-CDS-H-elongata_contig136925:1099..1333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136925 1100..1333 +
1691679167.3584182-CDS-H-elongata_contig136925:1099..13331691679167.3584182-CDS-H-elongata_contig136925:1099..1333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136925 1100..1333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136925.2602.1prot_H-elongata_contig136925.2602.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136925 1100..1333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136925.2602.1

>prot_H-elongata_contig136925.2602.1 ID=prot_H-elongata_contig136925.2602.1|Name=mRNA_H-elongata_contig136925.2602.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
KKFRIQLEAKGFQRSQAAPCVFRWILHGILVVVIVVYVDDLLVASATKRD
EKQAVRDLCSCFPIKDLGEASYYLRCHI
back to top

mRNA from alignment at H-elongata_contig136925:1100..1333+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136925.2602.1 ID=mRNA_H-elongata_contig136925.2602.1|Name=mRNA_H-elongata_contig136925.2602.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig136925:1100..1333+ (Himanthalia elongata Himel1 dioecious)
AAAAAGTTCAGGATCCAGCTCGAGGCGAAAGGTTTCCAGAGATCTCAAGC
CGCCCCATGCGTGTTCCGGTGGATTCTCCACGGGATATTGGTAGTCGTCA
TCGTGGTCTACGTCGACGACCTGCTGGTTGCTAGTGCGACGAAACGTGAC
GAGAAGCAAGCGGTGAGGGACCTGTGCTCCTGTTTCCCCATCAAGGACCT
AGGGGAGGCTTCATATTACCTGAGATGCCACATC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig136925:1100..1333+

>mRNA_H-elongata_contig136925.2602.1 ID=mRNA_H-elongata_contig136925.2602.1|Name=mRNA_H-elongata_contig136925.2602.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig136925:1100..1333+ (Himanthalia elongata Himel1 dioecious)
AAAAAGTTCAGGATCCAGCTCGAGGCGAAAGGTTTCCAGAGATCTCAAGC
CGCCCCATGCGTGTTCCGGTGGATTCTCCACGGGATATTGGTAGTCGTCA
TCGTGGTCTACGTCGACGACCTGCTGGTTGCTAGTGCGACGAAACGTGAC
GAGAAGCAAGCGGTGAGGGACCTGTGCTCCTGTTTCCCCATCAAGGACCT
AGGGGAGGCTTCATATTACCTGAGATGCCACATCAAAAAGTTCAGGATCC
AGCTCGAGGCGAAAGGTTTCCAGAGATCTCAAGCCGCCCCATGCGTGTTC
CGGTGGATTCTCCACGGGATATTGGTAGTCGTCATCGTGGTCTACGTCGA
CGACCTGCTGGTTGCTAGTGCGACGAAACGTGACGAGAAGCAAGCGGTGA
GGGACCTGTGCTCCTGTTTCCCCATCAAGGACCTAGGGGAGGCTTCATAT
TACCTGAGATGCCACATC
back to top