mRNA_H-elongata_contig136902.2601.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136902.2601.1
Unique NamemRNA_H-elongata_contig136902.2601.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Match: D7FP69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP69_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 4.300e-32
Identity = 84/162 (51.85%), Postives = 99/162 (61.11%), Query Frame = 1
Query:    1 RPVTLVGASLGARLIFSCLEEIARRHELWEEQV--------------ASQSSISSSAKSS--------NNA----NR-KSSEGGNG------------------------DAKCAAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGYSKSDVILGLVF 333
            RPVTLVG SLGARLIF+CLEEIARRHELWEEQ+              A+ SS +++ +           NA    NR KS  G NG                        +A+CAAG+IENVCLLGAPVGA+ ARWERV+R+ HGR+INGYSKSDVI+GLVF
Sbjct:  715 RPVTLVGTSLGARLIFACLEEIARRHELWEEQMMEXXXXXQDHWGCAAAGSSATTAGRGPPRSKMTRLRNAVTPDNRGKSKAGLNGVGVSAGSSXXXXXXXXXXXXXXKNEARCAAGVIENVCLLGAPVGATAARWERVARMAHGRVINGYSKSDVIIGLVF 876          
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Match: A0A835Z4D9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D9_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.610e-30
Identity = 65/112 (58.04%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 RPVTLVGASLGARLIFSCLEEIARRHELWEEQVASQSSISSSAKSSNNANRKSSEGGNGDAKC-AAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGYSKSDVILGLVF 333
            RPVTL+G S+GARL+FSCLEE+ RRHELWE          +S K   +  R+  +GG     C AAG+IEN  LLGAPVG S  RWERV+RVVHGR+INGY K D ILGL++
Sbjct:   94 RPVTLIGTSIGARLMFSCLEEMVRRHELWE----------ASGKQRASPPRRGRKGGGMGGPCNAAGIIENAVLLGAPVGVSPKRWERVARVVHGRLINGYFKKDGILGLIY 195          
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Match: A0A7S2RYC4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYC4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 8.180e-16
Identity = 45/111 (40.54%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    1 RPVTLVGASLGARLIFSCLEEIARRHELWEEQVASQSSISSSAKSSNNANRKSSEGGNGDAKCAAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGYSKSDVILGLVF 333
            RPVTL+G S+GARLIFSCL  + ++HE W  +V  +++      S+  A+ +S+   N      AGL+E+V L+G PV   G++W  V+++V GR++N YS +D  LG+++
Sbjct:  286 RPVTLIGYSMGARLIFSCLRTLRQKHETWLAEVQEETAALEPHGSNRGADERSAMFKNSPV---AGLVEDVVLMGTPV-PCGSQWTEVAKIVGGRLVNCYSATDWTLGILY 392          
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Match: A0A7S2WFL1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFL1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 9.200e-16
Identity = 45/111 (40.54%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    1 RPVTLVGASLGARLIFSCLEEIARRHELWEEQVASQSSISSSAKSSNNANRKSSEGGNGDAKCAAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGYSKSDVILGLVF 333
            RPVTL+G S+GARLIFSCL  + ++HE W  +V  +++      S+  A+ +S+   N      AGL+E+V L+G PV   G++W  V+++V GR++N YS +D  LG+++
Sbjct:  859 RPVTLIGYSMGARLIFSCLRTLRQKHETWLAEVQEETAALEPHGSNRGADERSAMFKNSPV---AGLVEDVVLMGTPV-PCGSQWTEVAKIVGGRLVNCYSATDWTLGILY 965          
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Match: A0A024G2C1_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G2C1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.450e-14
Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    1 RPVTLVGASLGARLIFSCLEEIARRHELWEEQVASQSSISSSAKSSNNANRKSSEGGNGDAKCAAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGYSKSDVILGLVF 333
            RPVTL+G  +GARLIFSCL+E+                +  +AK+S N    S +G + +A C  G+IEN   LG PV AS   WE +  VV GRIING+SK+D +L L++
Sbjct:  483 RPVTLIGYGMGARLIFSCLKEL----------------VGINAKASGN----SVDGSHTEANCL-GIIENAVFLGTPVPASVEEWESIRSVVAGRIINGFSKNDWMLALMY 572          
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Match: A0A8C5FQP9_GADMO (Transmembrane and coiled-coil domains 4 n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5FQP9_GADMO)

HSP 1 Score: 74.3 bits (181), Expect = 1.950e-13
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1
Query:    1 RPVTLVGASLGARLIFSCLEEIARRHELWEEQVASQSSISSSAKSSNNANRKSSEGGNGDAKCAAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGYSKSDVILGLVF 333
            RPV+L+G SLGAR+I+ CL+E+A                          N K SEG          ++E+V LLGAPV  S   WER+SRVV G+I+NGY + D +LG ++
Sbjct:  157 RPVSLIGFSLGARVIYYCLQELA--------------------------NDKGSEG----------MVEDVVLLGAPVDGSEKAWERISRVVAGKIVNGYCRGDWLLGFLY 231          
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Match: A0A7R9TSI6_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TSI6_9VIRI)

HSP 1 Score: 74.7 bits (182), Expect = 2.360e-13
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 1
Query:    1 RPVTLVGASLGARLIFSCLEEIARRHELWEEQVASQSSISSSAKSSNNANRKSSEGGNGDAKCAAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGYSKSDVIL 321
            RPV LVG SLGAR++F+CLEE+AR  E ++ Q                      +GG G +    GL+ +  LLGAPV A+ ARW  V  VV G ++N YS++D +L
Sbjct:  386 RPVVLVGISLGARMVFACLEELARHEERFQNQQ---------------------DGGTGTS--GRGLVHHAILLGAPVTAAPARWTAVRSVVSGSLVNAYSRNDWLL 469          
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Match: A0A8D0AU81_SANLU (Transmembrane and coiled-coil domains 4 n=1 Tax=Sander lucioperca TaxID=283035 RepID=A0A8D0AU81_SANLU)

HSP 1 Score: 73.9 bits (180), Expect = 2.900e-13
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1
Query:    1 RPVTLVGASLGARLIFSCLEEIARRHELWEEQVASQSSISSSAKSSNNANRKSSEGGNGDAKCAAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGYSKSDVILGLVF 333
            RPV+L+G SLGAR+I+ CL+E+A                          N K SEG          ++E+V LLGAPV  S   WER+SRVV G+I+NGY + D +LG ++
Sbjct:  157 RPVSLIGFSLGARVIYYCLQELA--------------------------NDKGSEG----------VVEDVVLLGAPVDGSEKAWERISRVVAGKIVNGYCRGDWLLGFLY 231          
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Match: A0A8C4ZGW8_GADMO (Transmembrane and coiled-coil domains 4 n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4ZGW8_GADMO)

HSP 1 Score: 74.3 bits (181), Expect = 3.230e-13
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1
Query:    1 RPVTLVGASLGARLIFSCLEEIARRHELWEEQVASQSSISSSAKSSNNANRKSSEGGNGDAKCAAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGYSKSDVILGLVF 333
            RPV+L+G SLGAR+I+ CL+E+A                          N K SEG          ++E+V LLGAPV  S   WER+SRVV G+I+NGY + D +LG ++
Sbjct:  402 RPVSLIGFSLGARVIYYCLQELA--------------------------NDKGSEG----------MVEDVVLLGAPVDGSEKAWERISRVVAGKIVNGYCRGDWLLGFLY 476          
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Match: A0A4W4FZR1_ELEEL (Transmembrane and coiled-coil domains 4 n=4 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4FZR1_ELEEL)

HSP 1 Score: 74.3 bits (181), Expect = 3.240e-13
Identity = 46/111 (41.44%), Postives = 60/111 (54.05%), Query Frame = 1
Query:    1 RPVTLVGASLGARLIFSCLEEIARRHELWEEQVASQSSISSSAKSSNNANRKSSEGGNGDAKCAAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGYSKSDVILGLVF 333
            RPV+L+G SLGAR+I+ CLEE+A                          N + SEG          +IE+V LLGAPV  S   WER+SRVV G+IINGY + D +LG ++
Sbjct:  332 RPVSLIGFSLGARVIYFCLEELA--------------------------NDQGSEG----------VIEDVVLLGAPVDGSEKTWERISRVVAGKIINGYCRGDWLLGFLY 406          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP69_ECTSI4.300e-3251.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z4D9_9STRA2.610e-3058.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2RYC4_9STRA8.180e-1640.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2WFL1_9STRA9.200e-1640.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A024G2C1_9STRA1.450e-1444.14Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
A0A8C5FQP9_GADMO1.950e-1339.64Transmembrane and coiled-coil domains 4 n=1 Tax=Ga... [more]
A0A7R9TSI6_9VIRI2.360e-1341.12Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A8D0AU81_SANLU2.900e-1339.64Transmembrane and coiled-coil domains 4 n=1 Tax=Sa... [more]
A0A8C4ZGW8_GADMO3.230e-1339.64Transmembrane and coiled-coil domains 4 n=1 Tax=Ga... [more]
A0A4W4FZR1_ELEEL3.240e-1341.44Transmembrane and coiled-coil domains 4 n=4 Tax=El... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136902contigH-elongata_contig136902:231..1270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue2.1e-28
Seed eggNOG ortholog2880.D7FP69
Preferred nameTMCO4
KEGG koko:K14773
GOsGO:0003674,GO:0003824,GO:0005575,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0016192,GO:0016298,GO:0016787,GO:0016788,GO:0031224,GO:0044425,GO:0051179,GO:0051234
EggNOG free text desc.Protein of unknown function (DUF726)
EggNOG OGsKOG2385@1,KOG2385@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929813.232679-CDS-H-elongata_contig136902:230..3281622929813.232679-CDS-H-elongata_contig136902:230..328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136902 231..328 +
1691679167.3392978-CDS-H-elongata_contig136902:230..3281691679167.3392978-CDS-H-elongata_contig136902:230..328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136902 231..328 +
1622929813.2491238-CDS-H-elongata_contig136902:1035..12701622929813.2491238-CDS-H-elongata_contig136902:1035..1270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136902 1036..1270 +
1691679167.350276-CDS-H-elongata_contig136902:1035..12701691679167.350276-CDS-H-elongata_contig136902:1035..1270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136902 1036..1270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136902.2601.1prot_H-elongata_contig136902.2601.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136902 231..1270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136902.2601.1

>prot_H-elongata_contig136902.2601.1 ID=prot_H-elongata_contig136902.2601.1|Name=mRNA_H-elongata_contig136902.2601.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
RPVTLVGASLGARLIFSCLEEIARRHELWEEQVASQSSISSSAKSSNNAN
RKSSEGGNGDAKCAAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGY
SKSDVILGLVF
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mRNA from alignment at H-elongata_contig136902:231..1270+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136902.2601.1 ID=mRNA_H-elongata_contig136902.2601.1|Name=mRNA_H-elongata_contig136902.2601.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1040bp|location=Sequence derived from alignment at H-elongata_contig136902:231..1270+ (Himanthalia elongata Himel1 dioecious)
CGACCGGTGACGCTAGTGGGAGCTTCTCTAGGAGCCCGGTTGATCTTCTC GTGTCTGGAAGAGATTGCGAGGCGCCACGAGCTCTGGGAGGAACAGGTGT GGTACGGAGGTCGACAGGATAGAGGAGTTACAAAAAAAACCAAGCGTCAC TAGTGGTCATTGGTCATTGTGATCGTCATTGTGATCGACATTGTGATCGA TACTTTATAACCAATGGTGGTGGCTCCGTCCTCTCCTCCCGAGGAGGCGT GGTCAATGGTCAATTATTAATGGTCTAACAGCTAAGTCACAACGGTCTAA CTTGAGTACGTCCCCCCGCCCCCCCTGTCATACATGCTGCTGAACAAAAA AAAAGAGATGTACAGGTATGTGATGAGCGGCAAAGTTGAAACTCTCACGT GGGTGGAATCATATATATATAGAGAGAGATGTATGTCGTGGAATTCGTAA CCAAGCAAAGTTTAAAGCCCCCGGACCCCCCCCCCTCCCCCCCCCCCCCC CGCACCCCACAGAAAAGACCCCAAAAAGAGAAAAAAAGAAAAACATACGA CATAATACATGAAAAATCCTATACTATACGCAGTAGAAAACGCCTCCCTC CCCCCCTTCTCCCTAAAAAAAAACGCCTCCGCACCACCGCACCGTACTCC TGCCCGATAACGAACCGCCGCCCACACCAGATGCTCGAAACAAGGGAAGG AATCTCGCCCTCATCCTCGTCTGACCGCGGTATGGCCAACCGCCTCAAAA GCGCCGTCCACAAGACGAGCAGCAGCAGCCGATCGCGACTCTTTGGCGTG AGCAGCGCCTCCCAATCTTCCATATCCTCCTCCGCCAAAAGCAGCAATAA CGCGAACCGCAAGAGCAGCGAAGGTGGCAACGGTGACGCCAAGTGCGCCG CGGGATTGATCGAAAACGTTTGCCTGCTTGGGGCGCCGGTGGGGGCCTCA GGGGCGCGCTGGGAGCGCGTGTCCCGCGTCGTTCACGGTAGGATCATCAA CGGGTACTCGAAGTCGGACGTGATCCTGGGGCTTGTGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig136902:231..1270+

>mRNA_H-elongata_contig136902.2601.1 ID=mRNA_H-elongata_contig136902.2601.1|Name=mRNA_H-elongata_contig136902.2601.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig136902:231..1270+ (Himanthalia elongata Himel1 dioecious)
CGACCGGTGACGCTAGTGGGAGCTTCTCTAGGAGCCCGGTTGATCTTCTC
GTGTCTGGAAGAGATTGCGAGGCGCCACGAGCTCTGGGAGGAACAGGTCG
ACCGGTGACGCTAGTGGGAGCTTCTCTAGGAGCCCGGTTGATCTTCTCGT
GTCTGGAAGAGATTGCGAGGCGCCACGAGCTCTGGGAGGAACAGGTCGCC
TCCCAATCTTCCATATCCTCCTCCGCCAAAAGCAGCAATAACGCGAACCG
CAAGAGCAGCGAAGGTGGCAACGGTGACGCCAAGTGCGCCGCGGGATTGA
TCGAAAACGTTTGCCTGCTTGGGGCGCCGGTGGGGGCCTCAGGGGCGCGC
TGGGAGCGCGTGTCCCGCGTCGTTCACGGTAGGATCATCAACGGGTACTC
GAAGTCGGACGTGATCCTGGGGCTTGTGTTCCGCCTCCCAATCTTCCATA
TCCTCCTCCGCCAAAAGCAGCAATAACGCGAACCGCAAGAGCAGCGAAGG
TGGCAACGGTGACGCCAAGTGCGCCGCGGGATTGATCGAAAACGTTTGCC
TGCTTGGGGCGCCGGTGGGGGCCTCAGGGGCGCGCTGGGAGCGCGTGTCC
CGCGTCGTTCACGGTAGGATCATCAACGGGTACTCGAAGTCGGACGTGAT
CCTGGGGCTTGTGTTC
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