mRNA_H-elongata_contig136902.2601.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Match: D7FP69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP69_ECTSI) HSP 1 Score: 128 bits (321), Expect = 4.300e-32 Identity = 84/162 (51.85%), Postives = 99/162 (61.11%), Query Frame = 1
Query: 1 RPVTLVGASLGARLIFSCLEEIARRHELWEEQV--------------ASQSSISSSAKSS--------NNA----NR-KSSEGGNG------------------------DAKCAAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGYSKSDVILGLVF 333
RPVTLVG SLGARLIF+CLEEIARRHELWEEQ+ A+ SS +++ + NA NR KS G NG +A+CAAG+IENVCLLGAPVGA+ ARWERV+R+ HGR+INGYSKSDVI+GLVF
Sbjct: 715 RPVTLVGTSLGARLIFACLEEIARRHELWEEQMMEXXXXXQDHWGCAAAGSSATTAGRGPPRSKMTRLRNAVTPDNRGKSKAGLNGVGVSAGSSXXXXXXXXXXXXXXKNEARCAAGVIENVCLLGAPVGATAARWERVARMAHGRVINGYSKSDVIIGLVF 876
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Match: A0A835Z4D9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D9_9STRA) HSP 1 Score: 119 bits (298), Expect = 2.610e-30 Identity = 65/112 (58.04%), Postives = 78/112 (69.64%), Query Frame = 1
Query: 1 RPVTLVGASLGARLIFSCLEEIARRHELWEEQVASQSSISSSAKSSNNANRKSSEGGNGDAKC-AAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGYSKSDVILGLVF 333
RPVTL+G S+GARL+FSCLEE+ RRHELWE +S K + R+ +GG C AAG+IEN LLGAPVG S RWERV+RVVHGR+INGY K D ILGL++
Sbjct: 94 RPVTLIGTSIGARLMFSCLEEMVRRHELWE----------ASGKQRASPPRRGRKGGGMGGPCNAAGIIENAVLLGAPVGVSPKRWERVARVVHGRLINGYFKKDGILGLIY 195
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Match: A0A7S2RYC4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYC4_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 8.180e-16 Identity = 45/111 (40.54%), Postives = 72/111 (64.86%), Query Frame = 1
Query: 1 RPVTLVGASLGARLIFSCLEEIARRHELWEEQVASQSSISSSAKSSNNANRKSSEGGNGDAKCAAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGYSKSDVILGLVF 333
RPVTL+G S+GARLIFSCL + ++HE W +V +++ S+ A+ +S+ N AGL+E+V L+G PV G++W V+++V GR++N YS +D LG+++
Sbjct: 286 RPVTLIGYSMGARLIFSCLRTLRQKHETWLAEVQEETAALEPHGSNRGADERSAMFKNSPV---AGLVEDVVLMGTPV-PCGSQWTEVAKIVGGRLVNCYSATDWTLGILY 392
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Match: A0A7S2WFL1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFL1_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 9.200e-16 Identity = 45/111 (40.54%), Postives = 72/111 (64.86%), Query Frame = 1
Query: 1 RPVTLVGASLGARLIFSCLEEIARRHELWEEQVASQSSISSSAKSSNNANRKSSEGGNGDAKCAAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGYSKSDVILGLVF 333
RPVTL+G S+GARLIFSCL + ++HE W +V +++ S+ A+ +S+ N AGL+E+V L+G PV G++W V+++V GR++N YS +D LG+++
Sbjct: 859 RPVTLIGYSMGARLIFSCLRTLRQKHETWLAEVQEETAALEPHGSNRGADERSAMFKNSPV---AGLVEDVVLMGTPV-PCGSQWTEVAKIVGGRLVNCYSATDWTLGILY 965
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Match: A0A024G2C1_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G2C1_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.450e-14 Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = 1
Query: 1 RPVTLVGASLGARLIFSCLEEIARRHELWEEQVASQSSISSSAKSSNNANRKSSEGGNGDAKCAAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGYSKSDVILGLVF 333
RPVTL+G +GARLIFSCL+E+ + +AK+S N S +G + +A C G+IEN LG PV AS WE + VV GRIING+SK+D +L L++
Sbjct: 483 RPVTLIGYGMGARLIFSCLKEL----------------VGINAKASGN----SVDGSHTEANCL-GIIENAVFLGTPVPASVEEWESIRSVVAGRIINGFSKNDWMLALMY 572
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Match: A0A8C5FQP9_GADMO (Transmembrane and coiled-coil domains 4 n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5FQP9_GADMO) HSP 1 Score: 74.3 bits (181), Expect = 1.950e-13 Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1
Query: 1 RPVTLVGASLGARLIFSCLEEIARRHELWEEQVASQSSISSSAKSSNNANRKSSEGGNGDAKCAAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGYSKSDVILGLVF 333
RPV+L+G SLGAR+I+ CL+E+A N K SEG ++E+V LLGAPV S WER+SRVV G+I+NGY + D +LG ++
Sbjct: 157 RPVSLIGFSLGARVIYYCLQELA--------------------------NDKGSEG----------MVEDVVLLGAPVDGSEKAWERISRVVAGKIVNGYCRGDWLLGFLY 231
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Match: A0A7R9TSI6_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TSI6_9VIRI) HSP 1 Score: 74.7 bits (182), Expect = 2.360e-13 Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 1
Query: 1 RPVTLVGASLGARLIFSCLEEIARRHELWEEQVASQSSISSSAKSSNNANRKSSEGGNGDAKCAAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGYSKSDVIL 321
RPV LVG SLGAR++F+CLEE+AR E ++ Q +GG G + GL+ + LLGAPV A+ ARW V VV G ++N YS++D +L
Sbjct: 386 RPVVLVGISLGARMVFACLEELARHEERFQNQQ---------------------DGGTGTS--GRGLVHHAILLGAPVTAAPARWTAVRSVVSGSLVNAYSRNDWLL 469
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Match: A0A8D0AU81_SANLU (Transmembrane and coiled-coil domains 4 n=1 Tax=Sander lucioperca TaxID=283035 RepID=A0A8D0AU81_SANLU) HSP 1 Score: 73.9 bits (180), Expect = 2.900e-13 Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1
Query: 1 RPVTLVGASLGARLIFSCLEEIARRHELWEEQVASQSSISSSAKSSNNANRKSSEGGNGDAKCAAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGYSKSDVILGLVF 333
RPV+L+G SLGAR+I+ CL+E+A N K SEG ++E+V LLGAPV S WER+SRVV G+I+NGY + D +LG ++
Sbjct: 157 RPVSLIGFSLGARVIYYCLQELA--------------------------NDKGSEG----------VVEDVVLLGAPVDGSEKAWERISRVVAGKIVNGYCRGDWLLGFLY 231
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Match: A0A8C4ZGW8_GADMO (Transmembrane and coiled-coil domains 4 n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4ZGW8_GADMO) HSP 1 Score: 74.3 bits (181), Expect = 3.230e-13 Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1
Query: 1 RPVTLVGASLGARLIFSCLEEIARRHELWEEQVASQSSISSSAKSSNNANRKSSEGGNGDAKCAAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGYSKSDVILGLVF 333
RPV+L+G SLGAR+I+ CL+E+A N K SEG ++E+V LLGAPV S WER+SRVV G+I+NGY + D +LG ++
Sbjct: 402 RPVSLIGFSLGARVIYYCLQELA--------------------------NDKGSEG----------MVEDVVLLGAPVDGSEKAWERISRVVAGKIVNGYCRGDWLLGFLY 476
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Match: A0A4W4FZR1_ELEEL (Transmembrane and coiled-coil domains 4 n=4 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4FZR1_ELEEL) HSP 1 Score: 74.3 bits (181), Expect = 3.240e-13 Identity = 46/111 (41.44%), Postives = 60/111 (54.05%), Query Frame = 1
Query: 1 RPVTLVGASLGARLIFSCLEEIARRHELWEEQVASQSSISSSAKSSNNANRKSSEGGNGDAKCAAGLIENVCLLGAPVGASGARWERVSRVVHGRIINGYSKSDVILGLVF 333
RPV+L+G SLGAR+I+ CLEE+A N + SEG +IE+V LLGAPV S WER+SRVV G+IINGY + D +LG ++
Sbjct: 332 RPVSLIGFSLGARVIYFCLEELA--------------------------NDQGSEG----------VIEDVVLLGAPVDGSEKTWERISRVVAGKIINGYCRGDWLLGFLY 406 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136902.2601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig136902.2601.1 >prot_H-elongata_contig136902.2601.1 ID=prot_H-elongata_contig136902.2601.1|Name=mRNA_H-elongata_contig136902.2601.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp RPVTLVGASLGARLIFSCLEEIARRHELWEEQVASQSSISSSAKSSNNANback to top mRNA from alignment at H-elongata_contig136902:231..1270+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig136902.2601.1 ID=mRNA_H-elongata_contig136902.2601.1|Name=mRNA_H-elongata_contig136902.2601.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1040bp|location=Sequence derived from alignment at H-elongata_contig136902:231..1270+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig136902:231..1270+ >mRNA_H-elongata_contig136902.2601.1 ID=mRNA_H-elongata_contig136902.2601.1|Name=mRNA_H-elongata_contig136902.2601.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig136902:231..1270+ (Himanthalia elongata Himel1 dioecious)back to top |