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Homology
BLAST of mRNA_H-elongata_contig13690.2600.1 vs. uniprot
Match: A0A6H5JL38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL38_9PHAE) HSP 1 Score: 222 bits (566), Expect = 9.820e-63 Identity = 109/163 (66.87%), Postives = 125/163 (76.69%), Query Frame = 1
Query: 733 GRWDMFFHGWWRHQNDQEGGRLPFKGALRSYDSLLKKHYAKMSFFQATALGAVGDVIAQRLERRWNPGQKFEWRRTAHAGALNMVIDGIFTPQWYNAVDRVNSDMTLRAALAKALAASTLYSPFANGIFLAGARVLRYGTRVRFNWDAWRRQLIVCTVRDFEV 1221
GR D F GW R +G PFKGAL SYD+LL++HY KMSF QATALG VGD +AQRLER NPGQ++E+ RT HAG LNM+IDGIFTP WYN VD VN +MTL A AKA+A+S YSPFANG+FLAGARVLRYG + RF W WRRQL VCT+RDFE+
Sbjct: 197 GRVDGFIDGWRR-----DGDGNPFKGALGSYDALLEEHYLKMSFGQATALGVVGDTVAQRLERWRNPGQRYEFLRTVHAGILNMIIDGIFTPHWYNLVDYVNDEMTLGLAFAKAVASSVFYSPFANGLFLAGARVLRYGFKTRFGWAVWRRQLTVCTIRDFEM 354
BLAST of mRNA_H-elongata_contig13690.2600.1 vs. uniprot
Match: A0A7S2UZM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZM4_9STRA) HSP 1 Score: 125 bits (313), Expect = 5.660e-28 Identity = 57/141 (40.43%), Postives = 92/141 (65.25%), Query Frame = 1
Query: 805 KGALRSYDSLLKKHYAKMSFFQATALGAVGDVIAQRLERRWNPGQKFEWRRTAHAGALNMVIDGIFTPQWYNAVDRVNSDMTLRAALAKALAASTLYSPFANGIFLAGARVLRYGTRV--RFNWDAWRRQLIVCTVRDFEV 1221
+G + YD+LL++HY MSF QAT LG +GD++AQ +E R + + +RT H G L M+IDG+ TP +YNA++ ++ T+ L K + ++ P ANG+FLAG +L++G + FN+ +W+ QL+V T+RD ++
Sbjct: 138 RGLFKKYDNLLRRHYLSMSFAQATVLGVLGDLLAQGIELRLFR-RSYNVKRTMHVGFLTMLIDGLATPHYYNALELISEKRTMPVVLLKTFIGTAIFGPVANGVFLAGVPLLQHGLDIVKMFNFASWKHQLLVATIRDLQI 277
BLAST of mRNA_H-elongata_contig13690.2600.1 vs. uniprot
Match: A0A835YIQ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIQ1_9STRA) HSP 1 Score: 100 bits (248), Expect = 1.690e-20 Identity = 47/98 (47.96%), Postives = 64/98 (65.31%), Query Frame = 1
Query: 952 RRTAHAGALNMVIDGIFTPQWYNAVDRVNSDMTLRAALAKALAASTLYSPFANGIFLAGARVLRYGTRVR---FNWDAWRRQLIVCTVRDFEVS*LPC 1236
RR G L M IDG+ TP+WY ++R ++ L +AK +A+S +Y PFANG+FLAG VLRYG V F+W AWRRQL++ T+RD ++ PC
Sbjct: 8 RRMVDVGLLTMAIDGVITPRWYAILERTSTSKALPVVVAKTVASSLIYGPFANGVFLAGVPVLRYGRAVLGRGFDWVAWRRQLLIATIRDLQLV-TPC 104
BLAST of mRNA_H-elongata_contig13690.2600.1 vs. uniprot
Match: D8LNF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF3_ECTSI) HSP 1 Score: 89.7 bits (221), Expect = 1.400e-17 Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 1
Query: 1045 MTLRAALAKALAASTLYSPFANGIFLAGARVLRYGTRVRFNWDAWRRQLIVCTVRDFEV 1221
MTL A KA+A+S YSPFANG+FLAGARVLRYG + RF W WRRQL VCT+RDFE+
Sbjct: 1 MTLGLAFVKAVASSVFYSPFANGLFLAGARVLRYGFKTRFGWAEWRRQLTVCTIRDFEM 59
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | Mpv17/PMP22 |
| Ec32 ortholog | Ec-04_004070.1 |
| Exons | 4 |
| Model size | 1775 |
| Cds size | 1152 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929813.0987232-UTR-H-elongata_contig13690:1008..1083 | 1622929813.0987232-UTR-H-elongata_contig13690:1008..1083 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig13690 1009..1083 + |
| 1691679167.2900267-UTR-H-elongata_contig13690:1008..1083 | 1691679167.2900267-UTR-H-elongata_contig13690:1008..1083 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig13690 1009..1083 + |
| 1622929813.174157-UTR-H-elongata_contig13690:3882..4430 | 1622929813.174157-UTR-H-elongata_contig13690:3882..4430 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig13690 3883..4430 + |
| 1691679167.3278785-UTR-H-elongata_contig13690:3882..4430 | 1691679167.3278785-UTR-H-elongata_contig13690:3882..4430 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig13690 3883..4430 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929813.1153703-CDS-H-elongata_contig13690:1083..1878 | 1622929813.1153703-CDS-H-elongata_contig13690:1083..1878 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13690 1084..1878 + |
| 1691679167.297857-CDS-H-elongata_contig13690:1083..1878 | 1691679167.297857-CDS-H-elongata_contig13690:1083..1878 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13690 1084..1878 + |
| 1622929813.1279035-CDS-H-elongata_contig13690:2821..2942 | 1622929813.1279035-CDS-H-elongata_contig13690:2821..2942 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13690 2822..2942 + |
| 1691679167.305424-CDS-H-elongata_contig13690:2821..2942 | 1691679167.305424-CDS-H-elongata_contig13690:2821..2942 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13690 2822..2942 + |
| 1622929813.1450152-CDS-H-elongata_contig13690:3297..3461 | 1622929813.1450152-CDS-H-elongata_contig13690:3297..3461 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13690 3298..3461 + |
| 1691679167.3131707-CDS-H-elongata_contig13690:3297..3461 | 1691679167.3131707-CDS-H-elongata_contig13690:3297..3461 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13690 3298..3461 + |
| 1622929813.159766-CDS-H-elongata_contig13690:3810..3882 | 1622929813.159766-CDS-H-elongata_contig13690:3810..3882 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13690 3811..3882 + |
| 1691679167.320504-CDS-H-elongata_contig13690:3810..3882 | 1691679167.320504-CDS-H-elongata_contig13690:3810..3882 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13690 3811..3882 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13690.2600.1 >prot_H-elongata_contig13690.2600.1 ID=prot_H-elongata_contig13690.2600.1|Name=mRNA_H-elongata_contig13690.2600.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=384bp
MRGVCRLILILLSGANVISLAEEGVIADTSLPLSNDDHLETPLATATAKN TQSNFDQAAAAISVAASSAATTAAEAVGSFYAHGNGEEETSVRGLGCDAG SDQVDILASGECRSDESDIDPTDAAYQESDPTIDISAAEEPEDLENSPAN IAFLSKREDRGVEREKNADDGGLSSTIPVLELSEPLVWEDAVEADGENND NLFDSFAEAGTDEVLARRGGRWDMFFHGWWRHQNDQEGGRLPFKGALRSY DSLLKKHYAKMSFFQATALGAVGDVIAQRLERRWNPGQKFEWRRTAHAGA LNMVIDGIFTPQWYNAVDRVNSDMTLRAALAKALAASTLYSPFANGIFLA GARVLRYGTRVRFNWDAWRRQLIVCTVRDFEVS* back to topmRNA from alignment at H-elongata_contig13690:1009..4430+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig13690.2600.1 ID=mRNA_H-elongata_contig13690.2600.1|Name=mRNA_H-elongata_contig13690.2600.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3422bp|location=Sequence derived from alignment at H-elongata_contig13690:1009..4430+ (Himanthalia elongata Himel1 dioecious) CCAGCCGGGGCCTGGTTACCTCGAAGTCAGCACGACGGGCCGATCGTGTG
ACCACAACGTAGGATCCGCCGGACCATGAGAGGCGTGTGCCGTCTTATTC
TTATCTTGCTTTCTGGTGCAAACGTAATATCTCTAGCAGAGGAAGGAGTT
ATTGCTGATACGTCTTTGCCATTGTCGAACGACGACCACCTGGAGACCCC
GTTGGCGACCGCGACCGCGAAGAATACACAAAGCAACTTCGACCAAGCCG
CTGCTGCAATTTCTGTCGCTGCTTCCTCTGCAGCTACCACTGCCGCAGAG
GCTGTCGGAAGTTTTTATGCACATGGAAACGGGGAGGAAGAAACATCAGT
TAGAGGTTTAGGATGCGACGCGGGAAGCGATCAAGTTGACATTCTTGCTT
CGGGTGAGTGTAGAAGTGACGAGTCCGACATAGACCCCACAGATGCAGCT
TACCAGGAGTCCGACCCTACAATCGATATATCTGCTGCAGAAGAGCCGGA
AGATCTCGAAAACTCCCCGGCCAACATCGCATTCTTATCGAAAAGAGAGG
ACCGGGGCGTGGAACGCGAGAAAAACGCGGATGATGGAGGTTTGTCTTCT
ACCATTCCTGTGTTGGAGTTATCCGAGCCGCTCGTCTGGGAAGACGCTGT
TGAGGCCGACGGTGAAAATAATGACAACTTGTTTGACTCCTTCGCAGAAG
CGGGGACTGATGAGGTGTTGGCGAGACGGGGGGGGCGCTGGGATATGTTC
TTTCACGGCTGGTGGAGGCACCAGAACGACCAAGAGGGAGGGCGGCTACC
TTTCAAAGGGGCTCTGCGGAGCTACGACTCTTTGTTGAAAAAGCACTACG
CAAAGATGTCGTTCTTTCAGGCGAGTTGCACTAACGGTCAGTGAGTCTTC
GATCAAACGTTGATTGGACCCGTACCAAACACTGGTTGACCCGTTCCAAT
GATTCGTGAACGGACCGCTTTGCGTTGATCGATTCATATTGCTGGAAGCA
TCACGGAAGTTCGACTCCAACACGTAGCACTAGGTGGTACGATGTACCTC
TCGTGTTCATGTTCGGGGACCGATCAATGACGTGATCTAATTACAAATGC
GCCCCCAGTACTAGCCTCCATTACATATACCAACAACATATTGTTCCGCG
AAAATCCAATGCACCACTGAAAGAATACGACGTATCGTTCCAATACTGTC
TTAGACTGTATGACACATGTCCACTGTAACAATAGTGAGTTTGGGGAAAA
TGAGGCGTACAATAATTCGTCCATGGGGTTACCTGAATAGGCAGCACCCG
TCACTCAAGCTACCTTGAGGACTAATGGCTCAATGTTGGCGGAGTCTCGT
TGGCGAAGGCCATCGGTAAGCAATTACGCGACATGATGAAATCGGGATTG
ACCCGATAGCGGTTGACGATAGAGATGAACGCCGTCGCGGAAAACGAGAG
GATCCCGGGAGTACGCACCATTTTCAGCCTGGGTCGTGGGAATGAGCAGG
CTGACGCGGAACGGAACGGCCGAACCCGTTTCGCGAGACAAAATTCTCAG
GCGCAAACGGGGACAGGGAAACACATTTTCCCTGTTCAGTTAGCCACAAG
CAGGAGGCAGCCATATCCGGTTGATCCATACTCTGCTATATATGATGATG
TCATCACCACACATACACAGCGAGTGGCTGACCCCAATTACAATTTTGGC
GCTTGCTTCTGTTCTGTTTAAAACCGAATGTCTCTCTTTCCACCCGTGCT
GAGACCGCAATCCGTTCCTTATTGTGGCCTTCTCTTTTGAACACCCTTCG
CCCCTTACCGCAGGCGACCGCGCTCGGTGCGGTAGGGGACGTCATCGCCC
AGCGTCTGGAAAGACGGTGGAATCCCGGACAGAAGTTCGAGTGGAGGCGC
ACTGCTCATGCTGGCGCTCTCAACATGGTCATAGGCACGTACCAGTATAT
CACTACGTACTGCCCGCGAAATAAAAATGGACGCCGTTGTTGGGGTGCAC
CCGGTCCTTCGAAGGTTGACAATTTTCATTCGTCTAAGGCGCTTAGCGAT
GGATCAGGCCATCTCGGTGCTCGTGCCGCAGCGCCACCGATTGGTTGGAA
GTGCAGTTTCCCGGGATGGTGGTACACATATCGCACGGAAGAAGATGTTG
CCTTCGCTTCTCTTCCGAAAGAAAACCCCTCTCAAGACTATCTTCCCCTC
CCCCGCATCTCGGAGATCGACGCGCTCGTCTGATTTTTAACACAATTTCT
TCTGCTCCGTTCTGGCTGCCTTTACATCGCTTTCCAAAGATGGTATATTT
ACGCCTCAATGGTACAACGCCGTTGATCGCGTGAACTCTGACATGACGCT
CCGGGCGGCGCTCGCCAAGGCCCTGGCTGCGAGCACGTTGTACAGCCCCT
TCGCGAACGGGATTTTCCTCGCCGGCGCGCGGGTTCTGCGCTACGGCACC
AGGGTGCGCGAAAGGCGTGGCGCTATTTTGACCGTGTCTTTGTGTGCAGT
ATAATATTTAATCCTGGGAAATGCTCTGATTCACACGCAGTGCGGACGAA
TTGTTAGCCTTAGGGAGAGAGAGAAAGCAGACTCTTCGTGACGCAACGAT
CGGCGGTGTCGCCAGTGGTTGGCGGTTTTACTGCTGAAAACTGATCGCGT
TCGATCCTACCTCGTCCTAGTTGCAGCAAGATGCTGCTTGATCCCTTGTC
AAGCTACAGAAAAAATCCAACTGTTTTTCCATATAAAGATCACGCAGGGC
TAGTCCCCCTCTGTTATTATACTTTTGTACCCGTGTCGGCCTCTATCGAT
AGGTACGCTTCAACTGGGACGCATGGAGAAGGCAACTGATAGTATGTACG
GTGCGCGATTTCGAGGTGAGCTAGCTGCCATGTGGTGGGCGCTTTTCGAT
GGTGTATGTCTCGTGTCTGTTACCGTAGGGAGGAAAAGCGTTTTCCTTGA
AATAGGATGGCGTGCGGCTGTCGGTTTTGAGCGGTTCCTTCCATTGGTAT
CGTGTATTTACGTAAAACGGCCCCTTGTGTGGCAAATAGGCCGCTTTATT
GAGTAGCCCGGGAGGCCAAATATGTCTCTTGGGAAGAAGATCGTGCCGAA
GAGGCTGGGATCATCGAAAACGAGGCAGTAACCTACCGGCCGTTCGGTCG
ACCGACCGTAACGGTTTTGGCGAAAAGTACCGGAGGAAGTGAGAGGAAAA
ATAAAGCGATGAGGAGTGGAGCGACACTATAAGATTGAAGATAATTTTCC
CCTAAAGAAGTGTTTTTGATTGCTTGTGCCTTTATTGCTCGGCCGCCGTC
ACCTGCCGCATCGCGCGCGCCAATATGTCACGCCACGCAAACCACAACAC
GCCACGTAACTCAACGGCAAAAACCGACCACGACAACCAGATGTGGCCCC
CCTTGCACGTCCTGAATTTCTG back to topCoding sequence (CDS) from alignment at H-elongata_contig13690:1009..4430+ >mRNA_H-elongata_contig13690.2600.1 ID=mRNA_H-elongata_contig13690.2600.1|Name=mRNA_H-elongata_contig13690.2600.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2304bp|location=Sequence derived from alignment at H-elongata_contig13690:1009..4430+ (Himanthalia elongata Himel1 dioecious) ATGAGAGGCGTGTGCCGTCTTATTCTTATCTTGCTTTCTGGTGCAAACGT AATATCTCTAGCAGAGGAAGGAGTTATTGCTGATACGTCTTTGCCATTGT CGAACGACGACCACCTGGAGACCCCGTTGGCGACCGCGACCGCGAAGAAT ACACAAAGCAACTTCGACCAAGCCGCTGCTGCAATTTCTGTCGCTGCTTC CTCTGCAGCTACCACTGCCGCAGAGGCTGTCGGAAGTTTTTATGCACATG GAAACGGGGAGGAAGAAACATCAGTTAGAGGTTTAGGATGCGACGCGGGA AGCGATCAAGTTGACATTCTTGCTTCGGGTGAGTGTAGAAGTGACGAGTC CGACATAGACCCCACAGATGCAGCTTACCAGGAGTCCGACCCTACAATCG ATATATCTGCTGCAGAAGAGCCGGAAGATCTCGAAAACTCCCCGGCCAAC ATCGCATTCTTATCGAAAAGAGAGGACCGGGGCGTGGAACGCGAGAAAAA CGCGGATGATGGAGGTTTGTCTTCTACCATTCCTGTGTTGGAGTTATCCG AGCCGCTCGTCTGGGAAGACGCTGTTGAGGCCGACGGTGAAAATAATGAC AACTTGTTTGACTCCTTCGCAGAAGCGGGGACTGATGAGGTGTTGGCGAG ACGGGGGGGGCGCTGGGATATGTTCTTTCACGGCTGGTGGAGGCACCAGA ACGACCAAGAGGGAGGGCGGCTACCTTTCAAAGGGGCTCTGCGGAGCTAC GACTCTTTGTTGAAAAAGCACTACGCAAAGATGTCGTTCTTTCAGATGAG AGGCGTGTGCCGTCTTATTCTTATCTTGCTTTCTGGTGCAAACGTAATAT CTCTAGCAGAGGAAGGAGTTATTGCTGATACGTCTTTGCCATTGTCGAAC GACGACCACCTGGAGACCCCGTTGGCGACCGCGACCGCGAAGAATACACA AAGCAACTTCGACCAAGCCGCTGCTGCAATTTCTGTCGCTGCTTCCTCTG CAGCTACCACTGCCGCAGAGGCTGTCGGAAGTTTTTATGCACATGGAAAC GGGGAGGAAGAAACATCAGTTAGAGGTTTAGGATGCGACGCGGGAAGCGA TCAAGTTGACATTCTTGCTTCGGGTGAGTGTAGAAGTGACGAGTCCGACA TAGACCCCACAGATGCAGCTTACCAGGAGTCCGACCCTACAATCGATATA TCTGCTGCAGAAGAGCCGGAAGATCTCGAAAACTCCCCGGCCAACATCGC ATTCTTATCGAAAAGAGAGGACCGGGGCGTGGAACGCGAGAAAAACGCGG ATGATGGAGGTTTGTCTTCTACCATTCCTGTGTTGGAGTTATCCGAGCCG CTCGTCTGGGAAGACGCTGTTGAGGCCGACGGTGAAAATAATGACAACTT GTTTGACTCCTTCGCAGAAGCGGGGACTGATGAGGTGTTGGCGAGACGGG GGGGGCGCTGGGATATGTTCTTTCACGGCTGGTGGAGGCACCAGAACGAC CAAGAGGGAGGGCGGCTACCTTTCAAAGGGGCTCTGCGGAGCTACGACTC TTTGTTGAAAAAGCACTACGCAAAGATGTCGTTCTTTCAGGCGACCGCGC TCGGTGCGGTAGGGGACGTCATCGCCCAGCGTCTGGAAAGACGGTGGAAT CCCGGACAGAAGTTCGAGTGGAGGCGCACTGCTCATGCTGGCGCTCTCAA CATGGTCATAGGCGACCGCGCTCGGTGCGGTAGGGGACGTCATCGCCCAG CGTCTGGAAAGACGGTGGAATCCCGGACAGAAGTTCGAGTGGAGGCGCAC TGCTCATGCTGGCGCTCTCAACATGGTCATAGATGGTATATTTACGCCTC AATGGTACAACGCCGTTGATCGCGTGAACTCTGACATGACGCTCCGGGCG GCGCTCGCCAAGGCCCTGGCTGCGAGCACGTTGTACAGCCCCTTCGCGAA CGGGATTTTCCTCGCCGGCGCGCGGGTTCTGCGCTACGGCACCAGGATGG TATATTTACGCCTCAATGGTACAACGCCGTTGATCGCGTGAACTCTGACA TGACGCTCCGGGCGGCGCTCGCCAAGGCCCTGGCTGCGAGCACGTTGTAC AGCCCCTTCGCGAACGGGATTTTCCTCGCCGGCGCGCGGGTTCTGCGCTA CGGCACCAGGGTACGCTTCAACTGGGACGCATGGAGAAGGCAACTGATAG TATGTACGGTGCGCGATTTCGAGGTGAGCTAGGTACGCTTCAACTGGGAC GCATGGAGAAGGCAACTGATAGTATGTACGGTGCGCGATTTCGAGGTGAG CTAG back to top
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