mRNA_H-elongata_contig136895.2599.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Match: A0A6H5KFS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFS5_9PHAE) HSP 1 Score: 160 bits (405), Expect = 5.710e-44 Identity = 122/239 (51.05%), Postives = 145/239 (60.67%), Query Frame = 1
Query: 4 RDLIAGGTWLGVNRSGKFATVTNIPSAWDDLVAFVE--GTTTSMRAXXXXXXXXXXXXXXXXXXXXKRREG-----------------------------------------------AWAFSLGLLCAGIMTA-SVGLAMA-ATAALRRSRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNRSEEVIMRLPHGFYGVSNASLDTPWTKMLYGKSRVLQVLLR 567
RDL+AGGTWLGV+RSGKFAT+TN+ S W+ ++ V G AXXXXXXXXXXXXXXXXXXXX W ++L AG++TA SV LA+A A R+SRG LV++FLKGDE AE YCAR+ K+R R+AGFNLVL DP AW+L+NR E I RLPHGFYG+SN +LD PW KML+GKSRVLQVLLR
Sbjct: 64 RDLVAGGTWLGVSRSGKFATLTNVFSTWESMLEVVALGGWANKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSLGFSTPAGSSSSSSLLGWLYAL-CAAAGLVTAASVPLAVAVARIKARKSRGGLVADFLKGDEDAETYCARLSKERRRFAGFNLVLSDPSGAWLLSNRDEAGITRLPHGFYGISNDTLDKPWAKMLHGKSRVLQVLLR 301
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Match: D8LBN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN3_ECTSI) HSP 1 Score: 146 bits (368), Expect = 1.180e-39 Identity = 113/224 (50.45%), Postives = 136/224 (60.71%), Query Frame = 1
Query: 1 GRDLIAGGTWLGVNRSGKFATVTNIPSAWDDLVAFVE--GTTTSMRAXXXXXXXXXXXXXXXXXXXXKRREGAWAF-------------------------SLGL------------------LCA--GIMTA-SVGLAMA-ATAALRRSRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNRSEEVIMRLPHGFYGVSNASLDTPWTK 525
GRDL+AGGTWLGV+RSGKFAT+TN+ S W++++ V G + A XXXXXXXXXXXXXXXXX E + SLGL LCA G++TA SV LA+A A A R+SRG LV++FLKGDE AE YC+R+ K+R RYAGFNLVL DP AW+L+NR E I RLPHGFYG+SN +LD PW K
Sbjct: 55 GRDLVAGGTWLGVSRSGKFATLTNVSSTWENVLEDVTLGGWANKVAAVAXXXXXXXXXXXXXXXXXRAGHENGISXXXXXXXXXXXXXXXXXXXXXXXXVSSLGLSRPAGSSLSSSSLGWLYALCAAAGLVTAASVPLAVAVARAKARKSRGGLVADFLKGDEDAETYCSRLSKERRRYAGFNLVLSDPSGAWLLSNRDEAGITRLPHGFYGISNDTLDKPWAK 278
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Match: A0A353MA24_9DELT (Uncharacterized protein n=2 Tax=Geobacteraceae TaxID=213422 RepID=A0A353MA24_9DELT) HSP 1 Score: 87.4 bits (215), Expect = 1.240e-17 Identity = 59/187 (31.55%), Postives = 85/187 (45.45%), Query Frame = 1
Query: 1 GRDLIAGGTWLGVNRSGKFATVTNIPSAWDDLVAFVEGTTTSMRAXXXXXXXXXXXXXXXXXXXXKRREGAWAFSLGLLCAGIMTASVGLAMAATAALRRSRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNRSEEVIMRLPHGFYGVSNASLDTPWTKMLYGKSRVLQVL 561
GRDL+ GGTWLGV +G+ A +TN + V G RSRG LVSEFLKG+ +AE+Y R+ Y+G+NL+L DPG + +N+S+E++ +P G +G+SN L+TPW K+L GK+ + +VL
Sbjct: 45 GRDLVHGGTWLGVTSTGRIAALTNYRQP---KLPGVHG-------------------------------------------------------------RSRGELVSEFLKGETTAEEYLERLRGKGVHYSGYNLLLGDPGRLYCYSNKSDEIVT-IPPGVHGLSNHLLNTPWPKVLRGKASLARVL 166
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Match: UPI001C7F1B92 (NRDE family protein n=1 Tax=Pseudomonas sp. NCCP-436 TaxID=2842481 RepID=UPI001C7F1B92) HSP 1 Score: 85.9 bits (211), Expect = 4.540e-17 Identity = 57/187 (30.48%), Postives = 82/187 (43.85%), Query Frame = 1
Query: 1 GRDLIAGGTWLGVNRSGKFATVTNIPSAWDDLVAFVEGTTTSMRAXXXXXXXXXXXXXXXXXXXXKRREGAWAFSLGLLCAGIMTASVGLAMAATAALRRSRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNRSEEVIMRLPHGFYGVSNASLDTPWTKMLYGKSRVLQVL 561
GRDL AGGTWLG+ RSG+FA +TNI T+ +R+ RSRG L S FL+GD + + Y ++ +D +YAGFNL+L D W N++ + +L G YG++NASLDTPW K+L + + + +
Sbjct: 45 GRDLEAGGTWLGITRSGRFAALTNI-----------RDTSQPLRS------------------------------------------------------RSRGELTSTFLRGDCTPQTYLQQVMEDAQQYAGFNLLLGDSRQLWHFNSQEGQP-RQLNSGVYGLANASLDTPWPKLLQARDALARAI 165
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Match: B7S3D3_9GAMM (Uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 TaxID=247634 RepID=B7S3D3_9GAMM) HSP 1 Score: 84.7 bits (208), Expect = 1.320e-16 Identity = 63/190 (33.16%), Postives = 79/190 (41.58%), Query Frame = 1
Query: 1 GRDLIAGGTWLGVNRSGKFATVTNIPSAWDDLVAFVEGTTTSMRAXXXXXXXXXXXXXXXXXXXXKRREGAWAFSLGLLCAGIMTASVGLAMAATAALRRSRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNR---SEEVIMRLPHGFYGVSNASLDTPWTKMLYGKSRVLQVL 561
GRD AGG+W+GVNRSG FA VTN T A RSRG LV +L+GD SA+QY ++ YAGFNL+L D W ++N SE+ RL G YG+SNASLDTPW K+ GK + ++L
Sbjct: 45 GRDRQAGGSWMGVNRSGHFAAVTNSRDPEQ----------------------------------------------------------------TKAAERSRGELVLGYLQGDLSAQQYLDQLSLRAGAYAGFNLLLGDREDLWYVSNSGPSSEQSPRRLTPGIYGLSNASLDTPWPKVQRGKQVMAELL 170
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Match: A0A1I1V3U4_9DELT (Uncharacterized conserved protein, contains NRDE domain n=1 Tax=Nannocystis exedens TaxID=54 RepID=A0A1I1V3U4_9DELT) HSP 1 Score: 84.0 bits (206), Expect = 2.520e-16 Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 1
Query: 298 RSRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNRSEEVIMRLPHGFYGVSNASLDTPWTKMLYGKSRVLQVL 561
RSRG LV+++L+G + Y A I +R YAGFNLV DP W +NN++ E + RL G YG+SNA+LDTPW K++ GKS + ++L
Sbjct: 80 RSRGALVADYLRGTDDPGAYVAAIAGER--YAGFNLVCGDPHGVWYMNNKTGERL-RLAPGLYGISNAALDTPWPKVVRGKSGLARLL 164
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Match: A0A5C8YBH3_PSEME (Uncharacterized protein n=2 Tax=Pseudomonas TaxID=286 RepID=A0A5C8YBH3_PSEME) HSP 1 Score: 83.2 bits (204), Expect = 4.450e-16 Identity = 60/180 (33.33%), Postives = 74/180 (41.11%), Query Frame = 1
Query: 1 GRDLIAGGTWLGVNRSGKFATVTNIPSAWDDLVAFVEGTTTSMRAXXXXXXXXXXXXXXXXXXXXKRREGAWAFSLGLLCAGIMTASVGLAMAATAALRRSRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNRSEEVIMRLPHGFYGVSNASLDTPWTKMLYGK 540
GRDL AGGTWLG+ G+FA +TNI + + G RSRG L +E+L G SA Y RI +D YAGFNL+L D W N+R E +L G YG+SNASLDTPW K+LY +
Sbjct: 45 GRDLQAGGTWLGITAEGRFAALTNIRDP-------------------------------------RLKAGP----------------------------RSRGALTTEYLLGQASAPAYLDRIMRDAADYAGFNLLLGDRQQLWHFNSR-EGRPRQLRSGIYGMSNASLDTPWPKLLYAR 158
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Match: W6R1G9_PSEP5 (Ser/Thr-rich protein T10 in DGCR region n=15 Tax=Pseudomonas TaxID=286 RepID=W6R1G9_PSEP5) HSP 1 Score: 82.0 bits (201), Expect = 1.210e-15 Identity = 57/177 (32.20%), Postives = 74/177 (41.81%), Query Frame = 1
Query: 1 GRDLIAGGTWLGVNRSGKFATVTNIPSAWDDLVAFVEGTTTSMRAXXXXXXXXXXXXXXXXXXXXKRREGAWAFSLGLLCAGIMTASVGLAMAATAALRRSRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNRSEEVIMRLPHGFYGVSNASLDTPWTKML 531
GRDL AGGTWLGV G+FA +TNI +++ G RSRG L +++L G ESA Y RI +D YAGFNL++ D W N++ + +L G YG+SNASLDTPW K+L
Sbjct: 45 GRDLQAGGTWLGVTAQGRFAALTNIRDP-------------------------------------RQKAGP----------------------------RSRGALTADYLLGQESAPAYLDRIMRDATEYAGFNLLVGDAQQLWHFNSQEGQP-RQLESGIYGLSNASLDTPWPKLL 155
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Match: A0A418XJA8_9PSED (Uncharacterized protein n=1 Tax=Pseudomonas cavernicola TaxID=2320866 RepID=A0A418XJA8_9PSED) HSP 1 Score: 82.0 bits (201), Expect = 1.220e-15 Identity = 62/187 (33.16%), Postives = 80/187 (42.78%), Query Frame = 1
Query: 1 GRDLIAGGTWLGVNRSGKFATVTNIPSAWDDLVAFVEGTTTSMRAXXXXXXXXXXXXXXXXXXXXKRREGAWAFSLGLLCAGIMTASVGLAMAATAALRRSRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNRSEEVIMRLPHGFYGVSNASLDTPWTKMLYGKSRVLQVL 561
GRDL AGGTWLGV G+FA +TNI R G A G RSRG LV++FL+G ++ E Y A I + YAGFNL++ + W LN+R E +RL G YG+SNA LDTPW K+ K+ + + L
Sbjct: 45 GRDLEAGGTWLGVGPQGRFAALTNI-----------------------------------------RNPGQ--------------AQGG----------RSRGELVAQFLRGQQTPEAYLAAIAERASEYAGFNLLVGNSHELWHLNSR-EGAPLRLGSGLYGLSNAGLDTPWPKVQRAKAALAECL 165
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Match: UPI001F403870 (NRDE family protein n=1 Tax=Pseudomonas sp. JM10B5a TaxID=2912055 RepID=UPI001F403870) HSP 1 Score: 80.9 bits (198), Expect = 3.580e-15 Identity = 56/176 (31.82%), Postives = 77/176 (43.75%), Query Frame = 1
Query: 1 GRDLIAGGTWLGVNRSGKFATVTNIPSAWDDLVAFVEGTTTSMRAXXXXXXXXXXXXXXXXXXXXKRREGAWAFSLGLLCAGIMTASVGLAMAATAALRRSRGRLVSEFLKGDESAEQYCARIFKDRWRYAGFNLVLVDPGSAWVLNNRSEEVIMRLPHGFYGVSNASLDTPWTKM 528
GRDL+AGGTW+G+ +G+FA +TNI R +G LG RRSRG+LV +FL+GD+S E Y + Y GFNL++ D + W LN++ + RL G YG+SNA L+TPW K+
Sbjct: 45 GRDLLAGGTWMGITPAGRFAALTNI-----------------------------------------RADGQ---PLG---------------------RRSRGKLVEDFLRGDDSPEGYLGELAGQLQDYTGFNLLVGDGQALWYLNSQ-QGAPQRLESGVYGLSNAGLNTPWPKL 154 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136895.2599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig136895.2599.1 >prot_H-elongata_contig136895.2599.1 ID=prot_H-elongata_contig136895.2599.1|Name=mRNA_H-elongata_contig136895.2599.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=189bp GRDLIAGGTWLGVNRSGKFATVTNIPSAWDDLVAFVEGTTTSMRAALASTback to top mRNA from alignment at H-elongata_contig136895:387..1641- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig136895.2599.1 ID=mRNA_H-elongata_contig136895.2599.1|Name=mRNA_H-elongata_contig136895.2599.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1255bp|location=Sequence derived from alignment at H-elongata_contig136895:387..1641- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig136895:387..1641- >mRNA_H-elongata_contig136895.2599.1 ID=mRNA_H-elongata_contig136895.2599.1|Name=mRNA_H-elongata_contig136895.2599.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1134bp|location=Sequence derived from alignment at H-elongata_contig136895:387..1641- (Himanthalia elongata Himel1 dioecious)back to top |