mRNA_H-elongata_contig136833.2594.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136833.2594.1
Unique NamemRNA_H-elongata_contig136833.2594.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig136833.2594.1 vs. uniprot
Match: V5K3Y9_SACJA (Trehalose-6-phosohate synthase n=1 Tax=Saccharina japonica TaxID=88149 RepID=V5K3Y9_SACJA)

HSP 1 Score: 137 bits (346), Expect = 3.830e-36
Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    1 VYNEGDMVWVHGFHLLLLPSFLTRVLRTARVGLFLHTPFPSSEIFRTLPFREDLLRGMLNADQVLFFLIE 210
            VYNEGDMVWVHGFHLLLLPSFLTRVLRTARVGLFLHTPFPSSEIFRTLPFREDLLRGMLNADQ+ F L E
Sbjct:  311 VYNEGDMVWVHGFHLLLLPSFLTRVLRTARVGLFLHTPFPSSEIFRTLPFREDLLRGMLNADQIGFHLFE 380
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BLAST of mRNA_H-elongata_contig136833.2594.1 vs. uniprot
Match: D7FL73_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL73_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 5.220e-36
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    1 VYNEGDMVWVHGFHLLLLPSFLTRVLRTARVGLFLHTPFPSSEIFRTLPFREDLLRGMLNADQVLFFLIE 210
            VYNEGDM+WVHGFHLLLLPSFLTRVLRTARVGLFLHTPFPSSEIFRTLPFREDLLRGMLNADQ+ F L E
Sbjct:  271 VYNEGDMIWVHGFHLLLLPSFLTRVLRTARVGLFLHTPFPSSEIFRTLPFREDLLRGMLNADQIGFHLFE 340
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BLAST of mRNA_H-elongata_contig136833.2594.1 vs. uniprot
Match: A0A7S2UVC1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVC1_9STRA)

HSP 1 Score: 123 bits (308), Expect = 5.130e-31
Identity = 57/70 (81.43%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 VYNEGDMVWVHGFHLLLLPSFLTRVLRTARVGLFLHTPFPSSEIFRTLPFREDLLRGMLNADQVLFFLIE 210
            VYNE D++W+HGFHLLL+PSFL+RVL  A+VGLFLHTPFPSSEIFRTLPFREDLLRG+LNADQV F L E
Sbjct:   92 VYNECDLIWIHGFHLLLVPSFLSRVLHVAKVGLFLHTPFPSSEIFRTLPFREDLLRGILNADQVGFHLYE 161
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BLAST of mRNA_H-elongata_contig136833.2594.1 vs. uniprot
Match: K8YR86_NANGC (Alpha,alpha-trehalose-phosphate synthase (UDP-forming) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YR86_NANGC)

HSP 1 Score: 117 bits (292), Expect = 7.480e-29
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    1 VYNEGDMVWVHGFHLLLLPSFLTRVLRTARVGLFLHTPFPSSEIFRTLPFREDLLRGMLNADQVLFFLIE 210
            VYNEGD++W+HGFHLL+LPSF+T+ L TA+ GLFLHTPFPSSEIFRTL  REDLLRGMLNAD + F L E
Sbjct:  458 VYNEGDLIWIHGFHLLVLPSFITKSLPTAKTGLFLHTPFPSSEIFRTLSVREDLLRGMLNADHIGFHLYE 527
[Close]
BLAST of mRNA_H-elongata_contig136833.2594.1 vs. uniprot
Match: A0A7S3Q2V3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q2V3_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.900e-28
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    4 YNEGDMVWVHGFHLLLLPSFLTRVLRTARVGLFLHTPFPSSEIFRTLPFREDLLRGMLNADQVLFFLIE 210
            +NEGD+VW+HGFHLL+LPSFLTR L  A++GLFLHTPFPSSEIFRTL  REDLLRGMLNADQV F L E
Sbjct:  434 FNEGDLVWIHGFHLLVLPSFLTRRLPMAKIGLFLHTPFPSSEIFRTLWCREDLLRGMLNADQVGFHLFE 502
[Close]
BLAST of mRNA_H-elongata_contig136833.2594.1 vs. uniprot
Match: A0A7S2PH62_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PH62_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.570e-28
Identity = 51/69 (73.91%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    4 YNEGDMVWVHGFHLLLLPSFLTRVLRTARVGLFLHTPFPSSEIFRTLPFREDLLRGMLNADQVLFFLIE 210
            +NEGD++W+HGFHL++LPSFLTR +  A++G+FLHTPFPSSEIFRTL  REDLLRGMLNADQV F L E
Sbjct:  137 FNEGDLIWIHGFHLMILPSFLTRRISMAKIGIFLHTPFPSSEIFRTLWCREDLLRGMLNADQVGFHLFE 205
[Close]
BLAST of mRNA_H-elongata_contig136833.2594.1 vs. uniprot
Match: K0R7L2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R7L2_THAOC)

HSP 1 Score: 112 bits (279), Expect = 4.630e-28
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    4 YNEGDMVWVHGFHLLLLPSFLTRVLRTARVGLFLHTPFPSSEIFRTLPFREDLLRGMLNADQVLFFLIE 210
            +NEGD++W+HGFHL++LPSFLTR +  A++G+F HTPFPSSEIFRTL  REDLLRGMLNADQV F L E
Sbjct:   91 FNEGDLIWIHGFHLMILPSFLTRRIPMAKIGIFFHTPFPSSEIFRTLWCREDLLRGMLNADQVGFHLFE 159
[Close]
BLAST of mRNA_H-elongata_contig136833.2594.1 vs. uniprot
Match: A0A7S2GVR7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GVR7_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.060e-28
Identity = 52/69 (75.36%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    4 YNEGDMVWVHGFHLLLLPSFLTRVLRTARVGLFLHTPFPSSEIFRTLPFREDLLRGMLNADQVLFFLIE 210
            +NEGD++W+HGFHLL+LPSFLTR +  A++GLFLHTPFPSSEIFRTL  REDLLRGMLN+DQV F L E
Sbjct:   86 FNEGDLIWIHGFHLLILPSFLTRRIPMAKIGLFLHTPFPSSEIFRTLWCREDLLRGMLNSDQVGFHLFE 154
[Close]
BLAST of mRNA_H-elongata_contig136833.2594.1 vs. uniprot
Match: B8BYN3_THAPS (Trehalose-6-phosphate synthase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYN3_THAPS)

HSP 1 Score: 114 bits (284), Expect = 8.900e-28
Identity = 51/69 (73.91%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    4 YNEGDMVWVHGFHLLLLPSFLTRVLRTARVGLFLHTPFPSSEIFRTLPFREDLLRGMLNADQVLFFLIE 210
            +NEGD++W+HGFHL++LPSFLTR +  A++G+FLHTPFPSSEIFRTL  REDLLRGMLNADQV F L E
Sbjct:  127 FNEGDLIWIHGFHLMILPSFLTRRISMAKIGIFLHTPFPSSEIFRTLWCREDLLRGMLNADQVGFHLFE 195
[Close]
BLAST of mRNA_H-elongata_contig136833.2594.1 vs. uniprot
Match: A0A7S4EIH7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EIH7_9STRA)

HSP 1 Score: 114 bits (284), Expect = 8.980e-28
Identity = 52/69 (75.36%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    4 YNEGDMVWVHGFHLLLLPSFLTRVLRTARVGLFLHTPFPSSEIFRTLPFREDLLRGMLNADQVLFFLIE 210
            +NEGD+VW+HGFHLL+LPS+LTR +  A++G+FLHTPFPSSEIFRTL  REDLLRGMLNADQV F L E
Sbjct:  304 FNEGDLVWIHGFHLLILPSYLTRRISMAKIGIFLHTPFPSSEIFRTLWCREDLLRGMLNADQVGFHLFE 372
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136833.2594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
V5K3Y9_SACJA3.830e-3694.29Trehalose-6-phosohate synthase n=1 Tax=Saccharina ... [more]
D7FL73_ECTSI5.220e-3692.86Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
A0A7S2UVC1_9STRA5.130e-3181.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K8YR86_NANGC7.480e-2975.71Alpha,alpha-trehalose-phosphate synthase (UDP-form... [more]
A0A7S3Q2V3_9STRA1.900e-2879.71Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2PH62_9STRA3.570e-2873.91Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
K0R7L2_THAOC4.630e-2872.46Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2GVR7_9STRA6.060e-2875.36Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
B8BYN3_THAPS8.900e-2873.91Trehalose-6-phosphate synthase (Fragment) n=1 Tax=... [more]
A0A7S4EIH7_9STRA8.980e-2875.36Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136833contigH-elongata_contig136833:611..829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue1.4e-19
Seed eggNOG ortholog2850.Phatr20504
Preferred nameTPS2
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K16055
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,map00500,map01100
EggNOG free text desc.Glycosyltransferase family 20
EggNOG OGs2XB3T@2836,COG1877@1,KOG1050@2759
EC2.4.1.15,3.1.3.12
COG Functional cat.G
CAZyGT20
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categorysignal peptide
Exons1
Model size219
Cds size201
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929812.5423102-UTR-H-elongata_contig136833:610..6281622929812.5423102-UTR-H-elongata_contig136833:610..628Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136833 611..628 +
1691679167.116089-UTR-H-elongata_contig136833:610..6281691679167.116089-UTR-H-elongata_contig136833:610..628Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136833 611..628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929812.5617723-CDS-H-elongata_contig136833:628..8291622929812.5617723-CDS-H-elongata_contig136833:628..829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136833 629..829 +
1691679167.128485-CDS-H-elongata_contig136833:628..8291691679167.128485-CDS-H-elongata_contig136833:628..829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136833 629..829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136833.2594.1prot_H-elongata_contig136833.2594.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136833 629..829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136833.2594.1

>prot_H-elongata_contig136833.2594.1 ID=prot_H-elongata_contig136833.2594.1|Name=mRNA_H-elongata_contig136833.2594.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MVWVHGFHLLLLPSFLTRVLRTARVGLFLHTPFPSSEIFRTLPFREDLLR
GMLNADQVLFFLIEIE*
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mRNA from alignment at H-elongata_contig136833:611..829+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136833.2594.1 ID=mRNA_H-elongata_contig136833.2594.1|Name=mRNA_H-elongata_contig136833.2594.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig136833:611..829+ (Himanthalia elongata Himel1 dioecious)
GTGTACAACGAGGGCGACATGGTGTGGGTCCATGGCTTCCACCTGCTGCT
GCTGCCGTCGTTCCTCACGAGAGTCCTCAGAACCGCCCGCGTCGGTCTAT
TTCTCCACACACCATTCCCGTCGTCGGAGATTTTCCGCACCCTGCCGTTT
CGGGAGGATTTGCTCCGAGGGATGCTTAACGCAGACCAGGTGTTGTTTTT
TTTAATTGAAATAGAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig136833:611..829+

>mRNA_H-elongata_contig136833.2594.1 ID=mRNA_H-elongata_contig136833.2594.1|Name=mRNA_H-elongata_contig136833.2594.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig136833:611..829+ (Himanthalia elongata Himel1 dioecious)
ATGGTGTGGGTCCATGGCTTCCACCTGCTGCTGCTGCCGTCGTTCCTCAC
GAGAGTCCTCAGAACCGCCCGCGTCGGTCTATTTCTCCACACACCATTCC
CGTCGTCGGAGATTTTCCGCACCCTGCCGTTTCGGGAGGATTTGCTCCGA
GGGATGCTTAACGCAGACCAGGTGTTGTTTTTTTTAATTGAAATAGAGTA
GATGGTGTGGGTCCATGGCTTCCACCTGCTGCTGCTGCCGTCGTTCCTCA
CGAGAGTCCTCAGAACCGCCCGCGTCGGTCTATTTCTCCACACACCATTC
CCGTCGTCGGAGATTTTCCGCACCCTGCCGTTTCGGGAGGATTTGCTCCG
AGGGATGCTTAACGCAGACCAGGTGTTGTTTTTTTTAATTGAAATAGAGT
AG
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