mRNA_H-elongata_contig136821.2593.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136821.2593.1
Unique NamemRNA_H-elongata_contig136821.2593.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig136821.2593.1 vs. uniprot
Match: D8LNI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI0_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 9.120e-36
Identity = 65/94 (69.15%), Postives = 81/94 (86.17%), Query Frame = 1 
Query:   16 NVGCSTGSCVDCCFKAAVPCVAHAKQLERKRLEQELLAAGPSRE---ERRRLAKGVFKEEAIHAIRETATVWCFVDFLCARSNQGAFTALSRTQ 288
              GC+TGSC+DCCFK+A+PC AHAKQL+RKRLE+ELL+AGPS+    E++R  K +FKEE+ HAI +TATVWCF+DFLCA+SNQ AFT+LSRTQ
Sbjct:  392 RAGCTTGSCLDCCFKSALPCGAHAKQLQRKRLEEELLSAGPSQSQIREKQRNIKDIFKEESFHAIGDTATVWCFLDFLCAKSNQAAFTSLSRTQ 485
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BLAST of mRNA_H-elongata_contig136821.2593.1 vs. uniprot
Match: A0A6H5JZT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZT8_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 9.210e-32
Identity = 62/97 (63.92%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    7 VILNVGCSTGSCVDCCFKAAVPCVAHAKQLERKRLEQELLAAGPSRE---ERRRLAKGVFKEEAIHAIRETATVWCFVDFLCARSNQGAFTALSRTQ 288
            V +  GC+TGSC+DCCFK+A+PC AHAKQL+RKRLE+ELL+A PS+    E++R  K  FKEE+ HAI +T TVWCF+DF+ A+SNQ AFT+LSRTQ
Sbjct:  791 VRIGGGCTTGSCLDCCFKSALPCAAHAKQLQRKRLEEELLSAKPSQSQIREKQRNIKDTFKEESFHAIGDTVTVWCFLDFVRAKSNQAAFTSLSRTQ 887
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BLAST of mRNA_H-elongata_contig136821.2593.1 vs. uniprot
Match: D8LL83_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL83_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 5.140e-5
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   16 NVGCSTGSCVDCCFKAAVPCVAHAKQLERKRLEQELL 126
             +GCS+ SC +CC K+  PC AHAKQ+ERK  E ELL
Sbjct:  383 KLGCSSESCFECCLKSGKPCEAHAKQVERKHREDELL 419
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BLAST of mRNA_H-elongata_contig136821.2593.1 vs. uniprot
Match: A0A6H5JLF6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLF6_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 7.130e-5
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 MGVILN-VGCSTGSCVDCCFKAAVPCVAHAKQLERKRLEQELL 126
            +G +L   GCS+ SC +CC K+  PC AHAKQ+ERK  E ELL
Sbjct:  630 LGQLLEGAGCSSESCFECCLKSGKPCEAHAKQVERKHREDELL 672
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136821.2593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LNI0_ECTSI9.120e-3669.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZT8_9PHAE9.210e-3263.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL83_ECTSI5.140e-559.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLF6_9PHAE7.130e-555.81Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136821contigH-elongata_contig136821:553..1565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size297
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929812.4796858-CDS-H-elongata_contig136821:552..7481622929812.4796858-CDS-H-elongata_contig136821:552..748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136821 553..748 +
1691679167.0896893-CDS-H-elongata_contig136821:552..7481691679167.0896893-CDS-H-elongata_contig136821:552..748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136821 553..748 +
1622929812.4942987-CDS-H-elongata_contig136821:1464..15651622929812.4942987-CDS-H-elongata_contig136821:1464..1565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136821 1465..1565 +
1691679167.1066072-CDS-H-elongata_contig136821:1464..15651691679167.1066072-CDS-H-elongata_contig136821:1464..1565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136821 1465..1565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136821.2593.1prot_H-elongata_contig136821.2593.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136821 553..1565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136821.2593.1

>prot_H-elongata_contig136821.2593.1 ID=prot_H-elongata_contig136821.2593.1|Name=mRNA_H-elongata_contig136821.2593.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MGVILNVGCSTGSCVDCCFKAAVPCVAHAKQLERKRLEQELLAAGPSREE
RRRLAKGVFKEEAIHAIRETATVWCFVDFLCARSNQGAFTALSRTQVS*
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mRNA from alignment at H-elongata_contig136821:553..1565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136821.2593.1 ID=mRNA_H-elongata_contig136821.2593.1|Name=mRNA_H-elongata_contig136821.2593.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1013bp|location=Sequence derived from alignment at H-elongata_contig136821:553..1565+ (Himanthalia elongata Himel1 dioecious)
ATGGGTGTTATCCTTAATGTAGGATGCTCTACCGGCAGCTGTGTCGATTG
CTGTTTCAAGGCCGCCGTGCCATGTGTGGCGCACGCGAAGCAGCTTGAGC
GAAAACGCCTCGAGCAGGAACTCCTTGCCGCAGGACCCAGCCGCGAGGAG
CGCAGGCGCCTAGCCAAGGGTGTCTTTAAGGAAGAGGCAATCCACGGTGA
GAAACGTTTTTTAAGAAATGTGTTGTAGGCCTCTCTTACTGGTTATTTGC
TTGCCGCGTTTTTACTGGTGTAGAGTGTAGGATGCTATTCTAACCAACCG
AATAAAGCGTCGAGATTTTTTTTCCATCCTTTTTTTAGCCGCAGCCATCG
GCGTGTCCTCTGCTGTAAAACCAATGAGAGGTCACCGTTCTAAGCTCTGG
TATCTGGTTCGCATCCTTTTCGCTTTCTTGGTCGAGTTTCCTCTCTGCGG
AAGTCGGTTGTGTACTATTATACTAATAGTAATGCTAATCGGATGGTCGT
CTCATAACGGGTACAATCAAGCATCCCAGCAATGCCGGGGCGGAGCAACT
TCGGGGTGGCTGTATTTCGCAATGGTGATACACACCACCTTTAAGCCATC
ATCCTTGCTTTTGCTACGTCAACCGAACATGTCTTGTGTTGATTGGTGGA
TTGGAGATGCCACGCCGGGTAACGAGATGGTGCATGTTCAACGGACGGAG
TTTTCCACTACACAGGCAGAACTGGAGATAGATAGATCGAGAGGACACCA
ATCGGTGTAAAACTCAACATATGTACGATATCGGGGATGTGCTGATGATG
TACCTTTGCTGATATTTTCAATCAACGATTTGCAGCTCTAGGCTAAAACC
CCCCGTCCCCCCACCCCTTCTAAAATTCCTTCGAACGCCTGTCTTTCTCG
AACGCCCCTTAGCCATCAGAGAAACAGCCACAGTCTGGTGCTTCGTTGAC
TTCCTGTGCGCGAGGTCTAACCAGGGAGCATTCACAGCCCTCTCCCGGAC
ACAGGTCAGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig136821:553..1565+

>mRNA_H-elongata_contig136821.2593.1 ID=mRNA_H-elongata_contig136821.2593.1|Name=mRNA_H-elongata_contig136821.2593.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig136821:553..1565+ (Himanthalia elongata Himel1 dioecious)
ATGGGTGTTATCCTTAATGTAGGATGCTCTACCGGCAGCTGTGTCGATTG
CTGTTTCAAGGCCGCCGTGCCATGTGTGGCGCACGCGAAGCAGCTTGAGC
GAAAACGCCTCGAGCAGGAACTCCTTGCCGCAGGACCCAGCCGCGAGGAG
CGCAGGCGCCTAGCCAAGGGTGTCTTTAAGGAAGAGGCAATCCACGATGG
GTGTTATCCTTAATGTAGGATGCTCTACCGGCAGCTGTGTCGATTGCTGT
TTCAAGGCCGCCGTGCCATGTGTGGCGCACGCGAAGCAGCTTGAGCGAAA
ACGCCTCGAGCAGGAACTCCTTGCCGCAGGACCCAGCCGCGAGGAGCGCA
GGCGCCTAGCCAAGGGTGTCTTTAAGGAAGAGGCAATCCACGCCATCAGA
GAAACAGCCACAGTCTGGTGCTTCGTTGACTTCCTGTGCGCGAGGTCTAA
CCAGGGAGCATTCACAGCCCTCTCCCGGACACAGGTCAGCTAACCATCAG
AGAAACAGCCACAGTCTGGTGCTTCGTTGACTTCCTGTGCGCGAGGTCTA
ACCAGGGAGCATTCACAGCCCTCTCCCGGACACAGGTCAGCTAA
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