mRNA_H-elongata_contig136754.2591.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136754.2591.1
Unique NamemRNA_H-elongata_contig136754.2591.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig136754.2591.1 vs. uniprot
Match: A0A418AIP1_9STRA (PSP1 C-terminal domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AIP1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 9.660e-26
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:   10 EEEQILHVCQTKVRNRGLPMKIVDAEYQFDRHKLTLFFEAERRVDFRELVRDLFAIYKVR 189
            EE+++LHVC+TKVR R LPM ++DAEYQFDRHKLT +FEA+RR+DFRELVRDLFAIYK R
Sbjct:   99 EEQEVLHVCRTKVRQRMLPMNVIDAEYQFDRHKLTFYFEADRRIDFRELVRDLFAIYKTR 158
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BLAST of mRNA_H-elongata_contig136754.2591.1 vs. uniprot
Match: A0A024TY07_9STRA (PSP1 C-terminal domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TY07_9STRA)

HSP 1 Score: 102 bits (255), Expect = 3.450e-24
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:   10 EEEQILHVCQTKVRNRGLPMKIVDAEYQFDRHKLTLFFEAERRVDFRELVRDLFAIYKVR 189
            EE+++LHVC+TKVR R LPM ++DAEYQFDRHKLT +FEAERR+DFRELVRDLFAIYK R
Sbjct:  414 EEQEVLHVCRTKVRQRMLPMNVIDAEYQFDRHKLTFYFEAERRIDFRELVRDLFAIYKTR 473
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BLAST of mRNA_H-elongata_contig136754.2591.1 vs. uniprot
Match: D8LEP0_ECTSI (PSP1 C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEP0_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 4.860e-24
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 KAQEEEQILHVCQTKVRNRGLPMKIVDAEYQFDRHKLTLFFEAERRVDFRELVRDLFAIYKVR 189
            K+QEE  IL VCQ KVR+R LPMKIVDAEYQFD +KLTLFFEAERR+DFRELVRDLFA+YK R
Sbjct:  750 KSQEEANILRVCQNKVRHRNLPMKIVDAEYQFDMNKLTLFFEAERRIDFRELVRDLFAVYKTR 812
[Close]
BLAST of mRNA_H-elongata_contig136754.2591.1 vs. uniprot
Match: A0A6G0XT00_9STRA (PSP1 C-terminal domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XT00_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.640e-23
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:   10 EEEQILHVCQTKVRNRGLPMKIVDAEYQFDRHKLTLFFEAERRVDFRELVRDLFAIYKVR 189
            EE+++L VC+TKVR R LPM ++DAEYQFDRHKLT FFEA+RR+DFRELVRDLFAIYK R
Sbjct:  371 EEQEVLQVCRTKVRQRMLPMNVIDAEYQFDRHKLTFFFEADRRIDFRELVRDLFAIYKTR 430
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BLAST of mRNA_H-elongata_contig136754.2591.1 vs. uniprot
Match: A0A7S2RAB1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAB1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.280e-23
Identity = 46/63 (73.02%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 KAQEEEQILHVCQTKVRNRGLPMKIVDAEYQFDRHKLTLFFEAERRVDFRELVRDLFAIYKVR 189
            K +EEEQ+L VC+ KV+ R LPM ++DAEYQFDRHKLT FFEAERR+DFRELVRDLF++YK R
Sbjct:  588 KNEEEEQVLRVCRNKVKQRSLPMYVIDAEYQFDRHKLTFFFEAERRIDFRELVRDLFSVYKTR 650
[Close]
BLAST of mRNA_H-elongata_contig136754.2591.1 vs. uniprot
Match: A0A485L6D2_9STRA (Aste57867_16483 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L6D2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 5.150e-23
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:   10 EEEQILHVCQTKVRNRGLPMKIVDAEYQFDRHKLTLFFEAERRVDFRELVRDLFAIYKVR 189
            EE+++L VC+TKVR R LPM ++DAEYQFDRHKLT FFEA+RR+DFRELVRDLFAIYK R
Sbjct:  452 EEQEVLQVCRTKVRQRMLPMNVIDAEYQFDRHKLTFFFEADRRIDFRELVRDLFAIYKTR 511
[Close]
BLAST of mRNA_H-elongata_contig136754.2591.1 vs. uniprot
Match: A0A485LPL0_9STRA (Aste57867_22250 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPL0_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 5.240e-23
Identity = 45/63 (71.43%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 KAQEEEQILHVCQTKVRNRGLPMKIVDAEYQFDRHKLTLFFEAERRVDFRELVRDLFAIYKVR 189
            K +EE  +L VC+ KVR RGLPM+++DAE+QFDRHKLT FF+A+RR+DFRELVRDLFAIYK R
Sbjct:  250 KMEEEAMVLDVCRDKVRQRGLPMQVIDAEFQFDRHKLTFFFQADRRIDFRELVRDLFAIYKTR 312
[Close]
BLAST of mRNA_H-elongata_contig136754.2591.1 vs. uniprot
Match: A0A7S2EDV8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EDV8_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.300e-23
Identity = 46/63 (73.02%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 KAQEEEQILHVCQTKVRNRGLPMKIVDAEYQFDRHKLTLFFEAERRVDFRELVRDLFAIYKVR 189
            K +EE+++L +C+ KVR RGLPM +VDAEYQFDRHKLT FFEAE R+DFRELVRDLF+IYK R
Sbjct:  315 KREEEDELLKICRAKVRQRGLPMNVVDAEYQFDRHKLTFFFEAEGRIDFRELVRDLFSIYKTR 377
[Close]
BLAST of mRNA_H-elongata_contig136754.2591.1 vs. uniprot
Match: A0A7S4RES2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RES2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 7.970e-23
Identity = 46/63 (73.02%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 KAQEEEQILHVCQTKVRNRGLPMKIVDAEYQFDRHKLTLFFEAERRVDFRELVRDLFAIYKVR 189
            K +EE+++L +C+ KVR RGLPM +VDAEYQFDRHKLT FFEAE R+DFRELVRDLF+IYK R
Sbjct:  629 KREEEDELLKICRAKVRQRGLPMNVVDAEYQFDRHKLTFFFEAEGRIDFRELVRDLFSIYKTR 691
[Close]
BLAST of mRNA_H-elongata_contig136754.2591.1 vs. uniprot
Match: A0A7S4VPJ5_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VPJ5_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 8.010e-23
Identity = 46/63 (73.02%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 KAQEEEQILHVCQTKVRNRGLPMKIVDAEYQFDRHKLTLFFEAERRVDFRELVRDLFAIYKVR 189
            K +EE+++L +C+ KVR RGLPM +VDAEYQFDRHKLT FFEAE R+DFRELVRDLF+IYK R
Sbjct: 1170 KREEEDELLKICRAKVRQRGLPMNVVDAEYQFDRHKLTFFFEAEGRIDFRELVRDLFSIYKTR 1232
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136754.2591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A418AIP1_9STRA9.660e-2676.67PSP1 C-terminal domain-containing protein n=1 Tax=... [more]
A0A024TY07_9STRA3.450e-2478.33PSP1 C-terminal domain-containing protein n=1 Tax=... [more]
D8LEP0_ECTSI4.860e-2480.95PSP1 C-terminal domain-containing protein n=2 Tax=... [more]
A0A6G0XT00_9STRA3.640e-2376.67PSP1 C-terminal domain-containing protein n=1 Tax=... [more]
A0A7S2RAB1_9STRA4.280e-2373.02Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A485L6D2_9STRA5.150e-2376.67Aste57867_16483 protein n=1 Tax=Aphanomyces stella... [more]
A0A485LPL0_9STRA5.240e-2371.43Aste57867_22250 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S2EDV8_9STRA5.300e-2373.02Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4RES2_9STRA7.970e-2373.02Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4VPJ5_9STRA8.010e-2373.02Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136754contigH-elongata_contig136754:306..938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue1.5e-20
Seed eggNOG ortholog2880.D8LEP0
EggNOG free text desc.PSP1 C-terminal conserved region
EggNOG OGsCOG1774@1,KOG4679@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_006710.2
Exons2
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929812.330556-CDS-H-elongata_contig136754:305..3601622929812.330556-CDS-H-elongata_contig136754:305..360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136754 306..360 -
1691679167.0183766-CDS-H-elongata_contig136754:305..3601691679167.0183766-CDS-H-elongata_contig136754:305..360Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136754 306..360 -
1622929812.3466525-CDS-H-elongata_contig136754:804..9381622929812.3466525-CDS-H-elongata_contig136754:804..938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136754 805..938 -
1691679167.030081-CDS-H-elongata_contig136754:804..9381691679167.030081-CDS-H-elongata_contig136754:804..938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136754 805..938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136754.2591.1prot_H-elongata_contig136754.2591.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136754 306..938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136754.2591.1

>prot_H-elongata_contig136754.2591.1 ID=prot_H-elongata_contig136754.2591.1|Name=mRNA_H-elongata_contig136754.2591.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
KAQEEEQILHVCQTKVRNRGLPMKIVDAEYQFDRHKLTLFFEAERRVDFR
ELVRDLFAIYKVR
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mRNA from alignment at H-elongata_contig136754:306..938-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136754.2591.1 ID=mRNA_H-elongata_contig136754.2591.1|Name=mRNA_H-elongata_contig136754.2591.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=633bp|location=Sequence derived from alignment at H-elongata_contig136754:306..938- (Himanthalia elongata Himel1 dioecious)
AAGGCCCAAGAAGAAGAGCAGATCCTGCATGTCTGCCAGACAAAGGTTCG
AAACCGCGGCTTGCCGATGAAGATCGTTGATGCCGAGTACCAGTTCGATC
GGCACAAGCTCACTCTCTTCTTTGAAGCGGAGAGGTAAGCGACACCCTTC
GAAGGGAGAAAGCAGCCCTGGCTTGGGCATACATTGGTTATTGTAGAAGG
TAACCAACATACATACCGGTACACTGATGAGAAGGACGGGAGGGAGAGAT
CATGTCCCACTGCAGAGAAAAATAATGGACTTGCCGAATATCGAAGGATT
CTACCTCTGGCTCCACTACTGCATCGTGTATTATTTTATTGGAAAAACTA
CAAGAGTAGTGGCAGTAGATGAAACTGAACCTATACTGCTGTAGACTATA
TAAATCGTTAATAATTGCCGGTTGGTTGTTTTAAAAGTCATAATAGCTCT
ACTATGATCCTCGTATTTCGTCAATTATACCCGACGTTTGAATCGCAAGA
TCCCCCTCATCTTTTCGTATGCCCTGGCACTGTGCTACTATGCTCTTCTT
GTCGAATCATATTCCTATGCTTTGGCAGGCGCGTCGACTTCCGCGAATTG
GTTCGCGATTTGTTCGCCATTTACAAGGTGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig136754:306..938-

>mRNA_H-elongata_contig136754.2591.1 ID=mRNA_H-elongata_contig136754.2591.1|Name=mRNA_H-elongata_contig136754.2591.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig136754:306..938- (Himanthalia elongata Himel1 dioecious)
AAGGCCCAAGAAGAAGAGCAGATCCTGCATGTCTGCCAGACAAAGGTTCG
AAACCGCGGCTTGCCGATGAAGATCGTTGATGCCGAGTACCAGTTCGATC
GGCACAAGCTCACTCTCTTCTTTGAAGCGGAGAGAAGGCCCAAGAAGAAG
AGCAGATCCTGCATGTCTGCCAGACAAAGGTTCGAAACCGCGGCTTGCCG
ATGAAGATCGTTGATGCCGAGTACCAGTTCGATCGGCACAAGCTCACTCT
CTTCTTTGAAGCGGAGAGGCGCGTCGACTTCCGCGAATTGGTTCGCGATT
TGTTCGCCATTTACAAGGTGAGGGCGCGTCGACTTCCGCGAATTGGTTCG
CGATTTGTTCGCCATTTACAAGGTGAGG
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