mRNA_H-elongata_contig136682.2587.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136682.2587.1
Unique NamemRNA_H-elongata_contig136682.2587.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig136682.2587.1 vs. uniprot
Match: A0A6H5KDU8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU8_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.360e-17
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:    1 KPKFWKVLRSTVAEIPASDHLILMMDANARTGGRGDKGGLGDVRVLGPYGRDTLNDNGSRLLACAAEHELSIGNMLF 231
            K  FW  L + + E+ + DHL+++MDANARTG R D  G  D +++G YGRD +N+NG RLL  AA++ LS+ N  F
Sbjct:   55 KDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRD--GCSDAKIMGAYGRDVMNNNGERLLGLAADNRLSLINTYF 129
[Close]
BLAST of mRNA_H-elongata_contig136682.2587.1 vs. uniprot
Match: A0A6H5JQN0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN0_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.430e-16
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:    1 KPKFWKVLRSTVAEIPASDHLILMMDANARTGGRGDKGGLGDVRVLGPYGRDTLNDNGSRLLACAAEHELSIGNMLF 231
            K  FW  L + + E+ + DHL+++MDANARTG R D  G  D +++G YGRD +N+NG RLL  AA++ LS+ N  F
Sbjct:   55 KDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRD--GCCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYF 129
[Close]
BLAST of mRNA_H-elongata_contig136682.2587.1 vs. uniprot
Match: A0A6H5KTM0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTM0_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 7.690e-16
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:    1 KPKFWKVLRSTVAEIPASDHLILMMDANARTGGRGDKGGLGDVRVLGPYGRDTLNDNGSRLLACAAEHELSIGNMLF 231
            K  FW  L + + E+ + DHL+++MDANARTG R D  G  D +++G YGRD +N+NG RLL  A++++LS+ N  F
Sbjct:  122 KDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRD--GCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYF 196
[Close]
BLAST of mRNA_H-elongata_contig136682.2587.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 9.520e-16
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:    1 KPKFWKVLRSTVAEIPASDHLILMMDANARTGGRGDKGGLGDVRVLGPYGRDTLNDNGSRLLACAAEHELSIGNMLF 231
            K  FW  L + + E+ + DHL+++MDANARTG R  +GG  D +VLG YGRD +N+NG RL   A++++ S+ N  F
Sbjct:  115 KDSFWTALDAAIREVHSRDHLVVLMDANARTGRR--RGGCCDAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYF 189
[Close]
BLAST of mRNA_H-elongata_contig136682.2587.1 vs. uniprot
Match: A0A6H5JQ12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ12_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.120e-15
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:    1 KPKFWKVLRSTVAEIPASDHLILMMDANARTGGRGDKGGLGDVRVLGPYGRDTLNDNGSRLLACAAEHELSIGNMLF 231
            K  FW  L + + E+ + DHL+++MDANARTG R D  G  D +++G YGRD +N+NG RLL  A++++LS+ N  F
Sbjct:   55 KDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRD--GCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYF 129
[Close]
BLAST of mRNA_H-elongata_contig136682.2587.1 vs. uniprot
Match: A0A6H5KL86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL86_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.470e-15
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:    1 KPKFWKVLRSTVAEIPASDHLILMMDANARTGGRGDKGGLGDVRVLGPYGRDTLNDNGSRLLACAAEHELSIGNMLF 231
            K  FW  L + + E+ + DHL+++MDANARTG R D  G  D +++G YGRD +N+NG RLL  A++++LS+ N  F
Sbjct:  101 KDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRD--GCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYF 175
[Close]
BLAST of mRNA_H-elongata_contig136682.2587.1 vs. uniprot
Match: A0A6H5KWS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS9_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.510e-15
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:    1 KPKFWKVLRSTVAEIPASDHLILMMDANARTGGRGDKGGLGDVRVLGPYGRDTLNDNGSRLLACAAEHELSIGNMLF 231
            K  FW  L + + E+ + DHL+++MDANARTG R D  G  D +++G YGRD +N+NG RLL  A++++LS+ N  F
Sbjct:   36 KDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRD--GCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYF 110
[Close]
BLAST of mRNA_H-elongata_contig136682.2587.1 vs. uniprot
Match: A0A6H5KQ63_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ63_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.740e-15
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:    1 KPKFWKVLRSTVAEIPASDHLILMMDANARTGGRGDKGGLGDVRVLGPYGRDTLNDNGSRLLACAAEHELSIGNMLF 231
            K  FW  L + + E+ + DHL+++MDANARTG R D  G  D +++G YGRD +N+NG RLL  A++++LS+ N  F
Sbjct:  115 KDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRD--GCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYF 189
[Close]
BLAST of mRNA_H-elongata_contig136682.2587.1 vs. uniprot
Match: A0A6H5JII6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII6_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.920e-15
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:    1 KPKFWKVLRSTVAEIPASDHLILMMDANARTGGRGDKGGLGDVRVLGPYGRDTLNDNGSRLLACAAEHELSIGNMLF 231
            K  FW  L + + E+ + DHL+++MDANARTG R D  G  D +++G YGRD +N+NG RLL  A++++LS+ N  F
Sbjct:  115 KDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRD--GCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYF 189
[Close]
BLAST of mRNA_H-elongata_contig136682.2587.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.000e-15
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:    1 KPKFWKVLRSTVAEIPASDHLILMMDANARTGGRGDKGGLGDVRVLGPYGRDTLNDNGSRLLACAAEHELSIGNMLF 231
            K  FW  L + + E+ + DHL+++MDANARTG R D  G  D +++G YGRD +N+NG RLL  A++++LS+ N  F
Sbjct:  218 KDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRD--GCCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYF 292
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136682.2587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDU8_9PHAE2.360e-1748.05Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQN0_9PHAE2.430e-1648.05Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KTM0_9PHAE7.690e-1646.75Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KBZ6_9PHAE9.520e-1646.75Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JQ12_9PHAE1.120e-1546.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL86_9PHAE1.470e-1546.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWS9_9PHAE1.510e-1546.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ63_9PHAE1.740e-1546.75Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JII6_9PHAE1.920e-1546.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV75_9PHAE2.000e-1546.75Endo/exonuclease/phosphatase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136682contigH-elongata_contig136682:1..231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929811.479138-CDS-H-elongata_contig136682:0..2311622929811.479138-CDS-H-elongata_contig136682:0..231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136682 1..231 +
1691679166.8009694-CDS-H-elongata_contig136682:0..2311691679166.8009694-CDS-H-elongata_contig136682:0..231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136682 1..231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136682.2587.1prot_H-elongata_contig136682.2587.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136682 1..231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136682.2587.1

>prot_H-elongata_contig136682.2587.1 ID=prot_H-elongata_contig136682.2587.1|Name=mRNA_H-elongata_contig136682.2587.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
KPKFWKVLRSTVAEIPASDHLILMMDANARTGGRGDKGGLGDVRVLGPYG
RDTLNDNGSRLLACAAEHELSIGNMLF
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mRNA from alignment at H-elongata_contig136682:1..231+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136682.2587.1 ID=mRNA_H-elongata_contig136682.2587.1|Name=mRNA_H-elongata_contig136682.2587.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig136682:1..231+ (Himanthalia elongata Himel1 dioecious)
AAGCCTAAGTTCTGGAAGGTACTTCGCAGCACTGTTGCTGAGATACCTGC
CAGCGACCACCTGATTTTGATGATGGATGCTAACGCCCGTACGGGAGGAA
GGGGAGATAAAGGTGGACTAGGGGATGTCCGGGTTTTGGGACCATACGGC
AGAGACACTCTCAATGACAACGGGTCGCGACTTCTAGCATGTGCGGCCGA
GCACGAGCTGTCGATTGGTAACATGCTTTTC
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Coding sequence (CDS) from alignment at H-elongata_contig136682:1..231+

>mRNA_H-elongata_contig136682.2587.1 ID=mRNA_H-elongata_contig136682.2587.1|Name=mRNA_H-elongata_contig136682.2587.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig136682:1..231+ (Himanthalia elongata Himel1 dioecious)
AAGCCTAAGTTCTGGAAGGTACTTCGCAGCACTGTTGCTGAGATACCTGC
CAGCGACCACCTGATTTTGATGATGGATGCTAACGCCCGTACGGGAGGAA
GGGGAGATAAAGGTGGACTAGGGGATGTCCGGGTTTTGGGACCATACGGC
AGAGACACTCTCAATGACAACGGGTCGCGACTTCTAGCATGTGCGGCCGA
GCACGAGCTGTCGATTGGTAACATGCTTTTCAAGCCTAAGTTCTGGAAGG
TACTTCGCAGCACTGTTGCTGAGATACCTGCCAGCGACCACCTGATTTTG
ATGATGGATGCTAACGCCCGTACGGGAGGAAGGGGAGATAAAGGTGGACT
AGGGGATGTCCGGGTTTTGGGACCATACGGCAGAGACACTCTCAATGACA
ACGGGTCGCGACTTCTAGCATGTGCGGCCGAGCACGAGCTGTCGATTGGT
AACATGCTTTTC
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