mRNA_H-elongata_contig13663.2583.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13663.2583.1
Unique NamemRNA_H-elongata_contig13663.2583.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13663.2583.1 vs. uniprot
Match: D8LBU8_ECTSI (Similar to centromere protein E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBU8_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 3.470e-52
Identity = 117/205 (57.07%), Postives = 150/205 (73.17%), Query Frame = 1 
Query:   49 QRKKDIAHRSREMKNNLESLLWDSHKSRSELTGQRGTLEQELKRLRRRMEDRSKMSLEEERKATDLARECGALKTQLEAAGQDIAFANEELKAVRASKSEADETLIAKDIENAKLRTKNESLKKEMDRRLHLANQEKIALSESMANTKRLFDERETTLGDQIKHMEEDSSALADALAEKVAQLEEQLTKAEEGGERLRTEARALK 663
            QRKKD+A RSREMKN+LE LL +S KS+++L GQR TLE EL +LRRRM++R+K +LEEERK T LARECG LKT+LEAA QDI  A+EEL AVR +K EADE L+ KD EN+KLR KNESL+ EMDRRLH  NQEK  L+E M  + R   ERE  L  Q++    ++  + +A + +++++EEQL  A E  ERL+ +AR  K
Sbjct:  188 QRKKDVAARSREMKNHLEKLLLNSQKSQADLAGQRSTLEAELGKLRRRMDERAKTALEEERKTTTLARECGNLKTELEAARQDITSASEELAAVRLTKQEADEALLGKDKENSKLRNKNESLRVEMDRRLHALNQEKGDLAEKMEESIRELKERENLLHGQLEATGRENKEIQEAQSAEISEMEEQLRLANEDRERLKADARKAK 392
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BLAST of mRNA_H-elongata_contig13663.2583.1 vs. uniprot
Match: A0A6H5KXI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXI9_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 5.960e-49
Identity = 109/193 (56.48%), Postives = 141/193 (73.06%), Query Frame = 1 
Query:   85 MKNNLESLLWDSHKSRSELTGQRGTLEQELKRLRRRMEDRSKMSLEEERKATDLARECGALKTQLEAAGQDIAFANEELKAVRASKSEADETLIAKDIENAKLRTKNESLKKEMDRRLHLANQEKIALSESMANTKRLFDERETTLGDQIKHMEEDSSALADALAEKVAQLEEQLTKAEEGGERLRTEARALK 663
            MKN+LE LL DS KS+++L GQR TLE EL +LRRRM++R+KM+LEEERK T LARECG LKT+LEAA QDI  A+EEL AVR +K EADE L+ KD EN+KLR+KNESL+ EMDRRLH  NQEK  L+E M  + R   +RE  L  Q++    ++  + +A A +++++EEQL  A E  ERL+ +AR  K
Sbjct:    1 MKNHLEKLLLDSQKSQADLAGQRATLEAELGKLRRRMDERAKMALEEERKTTRLARECGNLKTELEAARQDITSASEELAAVRLTKQEADEALLEKDKENSKLRSKNESLRVEMDRRLHALNQEKGDLAEKMEESIRELKDRENLLHGQLEATGRENKEIQEAQAAEISEMEEQLRLANEDRERLKADARKAK 193
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13663.2583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBU8_ECTSI3.470e-5257.07Similar to centromere protein E n=1 Tax=Ectocarpus... [more]
A0A6H5KXI9_9PHAE5.960e-4956.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13663contigH-elongata_contig13663:1381..4939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionsimilar to centromere protein E
Ec32 orthologEc-27_002630.1
Hectar predicted targeting categoryother localisation
Exons7
Model size671
Cds size669
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929811.1924207-CDS-H-elongata_contig13663:1380..14601622929811.1924207-CDS-H-elongata_contig13663:1380..1460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 1381..1460 +
1691679166.6757636-CDS-H-elongata_contig13663:1380..14601691679166.6757636-CDS-H-elongata_contig13663:1380..1460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 1381..1460 +
1622929811.2097824-CDS-H-elongata_contig13663:1901..19651622929811.2097824-CDS-H-elongata_contig13663:1901..1965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 1902..1965 +
1691679166.6948202-CDS-H-elongata_contig13663:1901..19651691679166.6948202-CDS-H-elongata_contig13663:1901..1965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 1902..1965 +
1622929811.2243934-CDS-H-elongata_contig13663:2309..24501622929811.2243934-CDS-H-elongata_contig13663:2309..2450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 2310..2450 +
1691679166.7107615-CDS-H-elongata_contig13663:2309..24501691679166.7107615-CDS-H-elongata_contig13663:2309..2450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 2310..2450 +
1622929811.237304-CDS-H-elongata_contig13663:2695..28001622929811.237304-CDS-H-elongata_contig13663:2695..2800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 2696..2800 +
1691679166.720696-CDS-H-elongata_contig13663:2695..28001691679166.720696-CDS-H-elongata_contig13663:2695..2800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 2696..2800 +
1622929811.2570276-CDS-H-elongata_contig13663:3515..36011622929811.2570276-CDS-H-elongata_contig13663:3515..3601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 3516..3601 +
1691679166.7307248-CDS-H-elongata_contig13663:3515..36011691679166.7307248-CDS-H-elongata_contig13663:3515..3601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 3516..3601 +
1622929811.2732449-CDS-H-elongata_contig13663:4404..44591622929811.2732449-CDS-H-elongata_contig13663:4404..4459Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 4405..4459 +
1691679166.7415173-CDS-H-elongata_contig13663:4404..44591691679166.7415173-CDS-H-elongata_contig13663:4404..4459Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 4405..4459 +
1622929811.2855244-CDS-H-elongata_contig13663:4799..49371622929811.2855244-CDS-H-elongata_contig13663:4799..4937Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 4800..4937 +
1691679166.7530015-CDS-H-elongata_contig13663:4799..49371691679166.7530015-CDS-H-elongata_contig13663:4799..4937Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13663 4800..4937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13663.2583.1prot_H-elongata_contig13663.2583.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13663 1381..4937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13663.2583.1

>prot_H-elongata_contig13663.2583.1 ID=prot_H-elongata_contig13663.2583.1|Name=mRNA_H-elongata_contig13663.2583.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp
LEETVTTKNEEIKSLEQRKKDIAHRSREMKNNLESLLWDSHKSRSELTGQ
RGTLEQELKRLRRRMEDRSKMSLEEERKATDLARECGALKTQLEAAGQDI
AFANEELKAVRASKSEADETLIAKDIENAKLRTKNESLKKEMDRRLHLAN
QEKIALSESMANTKRLFDERETTLGDQIKHMEEDSSALADALAEKVAQLE
EQLTKAEEGGERLRTEARALKED
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mRNA from alignment at H-elongata_contig13663:1381..4939+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13663.2583.1 ID=mRNA_H-elongata_contig13663.2583.1|Name=mRNA_H-elongata_contig13663.2583.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3559bp|location=Sequence derived from alignment at H-elongata_contig13663:1381..4939+ (Himanthalia elongata Himel1 dioecious)
CTAGAGGAAACAGTGACAACGAAGAACGAGGAGATCAAGAGCCTAGAGCA
GCGCAAGAAGGACATCGCGCATCGCTCAAGGTGGGTGTGTGGGTATGTAG
TTGTGTGGATGTGTGGGTGTGCGGCGTTAAAGCAAGCCGCGCATTTTTTT
ATTCCATTAAAAAAACCCCAATTATTATGTTTATTATAAGTATTATTAGT
ATTACTATTATTATTATTATTATTAATATTATTATTACTATTTCTTATAA
CCCTTTTTTGCTTTTTGTTTTCATGCTAATCATTTTTTTTTTTAATGTTT
TTTTTTTGCCATAACTTTAATTATAGTTATTTATTTAGTTTTCTCCTTCC
CCACACCTATATTTACAAAAGCGTACTCTATTTTTTGAAACTGCCCTAAG
CCTTCCAACATCGCGAGCCATTTTTTTCTAATAAAATATAATCAGCGTGT
TCTTCATTCCTTAAATTTACATTTATTAACACAGCAATGAACTCCCATAT
CTTCCCTTTCTTTGTCCTCAGAGAAATGAAAAACAATTTGGAAAGCCTTT
TGTGGGATTCTCACAAGTCTCGATCTGAACTAACGGTAAGCTGACGACGG
TTCCCGTCACCCGTGCGCCTTCCGAATGCATATCAACCCCCTCCTGACGC
CCCCACGCCTCGAACCTGGAATGCATGTTCCTTTCATTGCAGTGCTTTTA
CCTTCCGAAACGCATGTTTTTTTAATGTAAGGAAGGTAATCTGTAACTGT
AGTCTACTAGTAATATTAATATCAGGTACTAGTCATAAAAGGAATGATTG
TCTCGCCCTCTTGCCTCTCCTCCTCTATCGCCTTTGGGGGTGGACGTTTG
ACGACGGCTTGACGATGACTTGACGGTTGCTTGACGATGACTTGACGGTT
GCTTGACGATGGCTTGACGATGGTTTCAGGGTCAACGGGGTACCCTAGAG
CAAGAGCTGAAACGGCTGCGTCGGCGGATGGAAGATCGATCCAAGATGTC
CCTGGAGGAAGAGCGTAAGGCGACGGACCTCGCTCGAGAGTGCGGTGCTC
TCAAGACCCAGCTAGAAGCGGTACGGAATAAACGGAAGCGGGCTGGGGAA
ATTTCGGATACTCGACGGCTGTTTTTCAGTCTCTGTGTGAGGGTACAGTA
CAAATGAACGTAAATATTTATGCGGAAGCCAATATTTTTCAATTGTGTCA
CAAGGCCTCGCCACGATGTATTTACTCACATGTGATGCTTCTTCCCTGTA
CTGCCGCATACCATTTCGTTATTTCCTTTATTATTTTCACTTTTATTTTG
AATATTTTGAGACAGGCTGGTCAAGACATCGCGTTCGCGAACGAAGAATT
GAAGGCCGTCCGCGCGAGCAAGTCGGAGGCGGATGAGACTCTCATCGCCA
AGGACATAGAGAACGCCAAGGTGGGAGGAGGAACGTCGGAGGAAAGAATA
TACGCACGGTTAGACGAGAGTCAGAATAGTGTATCGTGGGCCGTCAACCG
TGACGGGTTGGTCGCCGCTTCTTTCGAGGACAATGGGAAGTTATTTACTG
AACCGTTTATGATCAACTTGACGATTATTAAAGTAATACTGTTACATTAA
TATTATTCCATGAATATTATTACACTAATACCAATACATAGTTTTCTTTT
TAAAAAAAACATATGAACTCATTCTATCCCTCTGAACATCCACGCCTTCT
TAGCACCGTGAGAGGTAGTGCAGTCCAGGGGACCAACCATCTTCAGGTTC
GAGTGTATACATTATGAATGCTACGTTTTGAACACAAAATCGTTCCCCGA
TAGTATTAATGGTAAATTAATCGGTTACAGTACAGTAGAGTACAGTACCG
GGTTCCAATAATATGATTTCAGTGGACAGTGGACATATTGTGAGGTGAGG
CTCGCGCGAATATACATATATCGGTGCAATAAGATGCTTGCATGCGCGCG
CGCGTGTGTATGCGATGTACATTCTGACCGTTTTCTCCCGCGCGGCTGTC
CTTTTTTAATTATTTGATGTGCGTGTGTGTGTGTGTCGTGTTGGGGGCGG
AGTAAGAAAAGTTAGGGGTGTTTTTTGGAGCTCTCCTAACCGTTGTCGCT
CGCCCGTCCGCCGTTGACATAAAAAAATGGCACAGCTCCGCACGAAGAAC
GAGAGCCTCAAGAAGGAGATGGATCGTCGACTGCACCTCGCCAACCAGGA
AAAGATTGCTCTCTCGGAGAGGTGGGAAGGGGTGGGAGGGAACCAAAGGA
GCGAAAAATCAGGGTTTTGGCGGTTTGGGGCTTGAGGGGGTGTTTGGTCG
GAGGCTAAAAGACATTTCTGCATGGCGACCCACAAAACCGAAATGTCCGA
GTGCTCTTTGTTTCCCGCGGTCTCTCCCAAAGGCTAGACTCTTTAGCATT
GTCCCAGATCTCGCTTCCGTTAGGCGCCTTCGTCTGCTGCGGATGCCGCT
CTTGGGTGTATTATTTAGATGTACCAGCTATGGTCTGTAATTTTATTTTG
TGATTATTTGTTTTTAATTTTCCTTCAGAAACGGTCAAGTCTAGTCTAAA
AAATTCTTGTTGCGCGTAACAATTTATCATCGTTAGCTTCGTTAGCATCG
TCTGCCCTGCCGTAGGGGAACAATCGTATTCATTTATTTTTAATGTGGAT
GTAGGATGTCGAGTGGTAACCCGGGGGGTGTAATATAAGCTAGACATTTA
GAGGCACAAGAAGAAATCGAAACAAAACCAAACACGGATAAAGAAAATAT
CTCACCGAAGCAACAACTATAGCGAAATAGCGCACCCTAACAACTAGAAA
ACTCTACGGCGACGGCGTGATGAAAGATGAAAATTGCCCAATCCGGGAAG
AACTTTCAGGTCAAAACATCACACACACACTCTCTCTCTCATTCTCATTA
TTTCTCTTTCTTTCTCTCTCTTTCAATCTCTTTCTCTCACTTTCTCTCTC
TTTCTCTCTTCTTCCGTTTGGGCGTTATCACCATCCTGCCACGCATCGCT
TCGCCTCGGTTCCTGCCCTGACAGCATGGCTAACACCAAGCGTCTGTTTG
ATGAGCGTGAGACGACCCTGGGCGACCAGGTATGAGATGGCCCCCATTTA
TTGAGAGTTAAGTCAGTGTGTTAATCCTACTTGTTTGGTTCGAACTTGTA
CCTACTGCCTACTACAGTACCTCTCTTATCCCCCACACACACCTCTACAT
GCTACATACTATAATGAAGATACCTTTGAGTGACCATTCTTTCAACCATC
CTCTAAACCATGTACACTAAACGAGAGACACTTTTAAACCTGTGGTTTTC
AACCTCGTCTGTTTTCTTCCGGCCCTAGATTTTTTCTATACTGCTCTAAA
ACTGTAAACAATACACTCGTAAATAGACCGTCCTCCATTTATTCTCCTGC
CCTGCCATGGTCCTTGCAGATAAAGCACATGGAGGAGGACTCTTCGGCGT
TGGCCGACGCCCTCGCGGAAAAGGTAGCCCAACTCGAGGAACAGCTCACC
AAGGCGGAGGAAGGCGGGGAGCGGCTGAGAACGGAGGCCCGCGCCCTGAA
GGAAGATAT
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Coding sequence (CDS) from alignment at H-elongata_contig13663:1381..4939+

>mRNA_H-elongata_contig13663.2583.1 ID=mRNA_H-elongata_contig13663.2583.1|Name=mRNA_H-elongata_contig13663.2583.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1338bp|location=Sequence derived from alignment at H-elongata_contig13663:1381..4939+ (Himanthalia elongata Himel1 dioecious)
CTAGAGGAAACAGTGACAACGAAGAACGAGGAGATCAAGAGCCTAGAGCA
GCGCAAGAAGGACATCGCGCATCGCTCAAGCTAGAGGAAACAGTGACAAC
GAAGAACGAGGAGATCAAGAGCCTAGAGCAGCGCAAGAAGGACATCGCGC
ATCGCTCAAGAGAAATGAAAAACAATTTGGAAAGCCTTTTGTGGGATTCT
CACAAGTCTCGATCTGAACTAACGAGAAATGAAAAACAATTTGGAAAGCC
TTTTGTGGGATTCTCACAAGTCTCGATCTGAACTAACGGGTCAACGGGGT
ACCCTAGAGCAAGAGCTGAAACGGCTGCGTCGGCGGATGGAAGATCGATC
CAAGATGTCCCTGGAGGAAGAGCGTAAGGCGACGGACCTCGCTCGAGAGT
GCGGTGCTCTCAAGACCCAGCTAGAAGCGGGTCAACGGGGTACCCTAGAG
CAAGAGCTGAAACGGCTGCGTCGGCGGATGGAAGATCGATCCAAGATGTC
CCTGGAGGAAGAGCGTAAGGCGACGGACCTCGCTCGAGAGTGCGGTGCTC
TCAAGACCCAGCTAGAAGCGGCTGGTCAAGACATCGCGTTCGCGAACGAA
GAATTGAAGGCCGTCCGCGCGAGCAAGTCGGAGGCGGATGAGACTCTCAT
CGCCAAGGACATAGAGAACGCCAAGGCTGGTCAAGACATCGCGTTCGCGA
ACGAAGAATTGAAGGCCGTCCGCGCGAGCAAGTCGGAGGCGGATGAGACT
CTCATCGCCAAGGACATAGAGAACGCCAAGCTCCGCACGAAGAACGAGAG
CCTCAAGAAGGAGATGGATCGTCGACTGCACCTCGCCAACCAGGAAAAGA
TTGCTCTCTCGGAGAGCTCCGCACGAAGAACGAGAGCCTCAAGAAGGAGA
TGGATCGTCGACTGCACCTCGCCAACCAGGAAAAGATTGCTCTCTCGGAG
AGCATGGCTAACACCAAGCGTCTGTTTGATGAGCGTGAGACGACCCTGGG
CGACCAGCATGGCTAACACCAAGCGTCTGTTTGATGAGCGTGAGACGACC
CTGGGCGACCAGATAAAGCACATGGAGGAGGACTCTTCGGCGTTGGCCGA
CGCCCTCGCGGAAAAGGTAGCCCAACTCGAGGAACAGCTCACCAAGGCGG
AGGAAGGCGGGGAGCGGCTGAGAACGGAGGCCCGCGCCCTGAAGGAAGAT
ATAAAGCACATGGAGGAGGACTCTTCGGCGTTGGCCGACGCCCTCGCGGA
AAAGGTAGCCCAACTCGAGGAACAGCTCACCAAGGCGGAGGAAGGCGGGG
AGCGGCTGAGAACGGAGGCCCGCGCCCTGAAGGAAGAT
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