mRNA_H-elongata_contig136587.2580.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Match: D8LBR5_ECTSI (Vesicle coat complex COPII, subunit SEC31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR5_ECTSI) HSP 1 Score: 206 bits (525), Expect = 9.300e-60 Identity = 103/119 (86.55%), Postives = 109/119 (91.60%), Query Frame = 1
Query: 1 SCGGADLWAKTQAQYFAREVERRPFLKVVSAIIKSELGGLVATSDLNQWQETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTVEMWAEELRAANTAIHGGTD 357
SCGGADLWAKTQAQYFARE +RPFLKVV+AIIKSELG LV SDL QWQETLAILSTYAKQEEFP LCEALA+RLE EAGD KSANLCYMCAVKVPKTVEMWAEEL++AN AI+GGTD
Sbjct: 425 SCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGVLVEGSDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTD 543
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Match: A0A6H5KCD9_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD9_9PHAE) HSP 1 Score: 206 bits (523), Expect = 3.580e-59 Identity = 102/119 (85.71%), Postives = 109/119 (91.60%), Query Frame = 1
Query: 1 SCGGADLWAKTQAQYFAREVERRPFLKVVSAIIKSELGGLVATSDLNQWQETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTVEMWAEELRAANTAIHGGTD 357
SCGGADLWAKTQAQYFARE +RPFLKVV+AIIKSELG LV SDL QWQETLAILSTYAKQEEFP LCEALA+RLE EAGD KSANLCYMCAVKVPKTVEMWA+EL++AN AI+GGTD
Sbjct: 646 SCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGVLVDASDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWADELKSANAAINGGTD 764
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Match: A0A7S3UX94_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX94_HETAK) HSP 1 Score: 152 bits (384), Expect = 3.970e-44 Identity = 76/113 (67.26%), Postives = 87/113 (76.99%), Query Frame = 1
Query: 1 SCGGADLWAKTQAQYFAREVERRPFLKVVSAIIKSELGGLVATSDLNQWQETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTVEMWAEELRAANTA 339
SCGGA+LWA TQA+YF RRPFL +++ IIKSELG LV + L W+ETLAILSTYAK +EFP LCEALAARLE EA D +A LCYMCAV VPKTV +W +LRAAN A
Sbjct: 51 SCGGAELWASTQARYFEAAGTRRPFLDLMACIIKSELGELVGANALGAWEETLAILSTYAKSDEFPVLCEALAARLEGEARDAAAATLCYMCAVNVPKTVGVWLRDLRAANLA 163
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Match: A0A7S2Y0E2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0E2_9STRA) HSP 1 Score: 153 bits (386), Expect = 1.520e-42 Identity = 78/111 (70.27%), Postives = 83/111 (74.77%), Query Frame = 1
Query: 1 SCGGADLWAKTQAQYFAREVERRPFLKVVSAIIKSELGGLVATSDLNQWQETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTVEMWAEELRAAN 333
SCGGADLWAKTQAQYF E RPFL +VSAII+SEL LV TS L WQETLAILSTYAK EEFP LCE LA RLE E+ D SA LCYMCAV V KTV+ W +EL N
Sbjct: 100 SCGGADLWAKTQAQYFETEGAYRPFLNIVSAIIRSELSKLVTTSKLTSWQETLAILSTYAKSEEFPGLCENLAERLESESFDVASATLCYMCAVNVHKTVQTWLDELHQVN 210
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Match: A0A7S2BT72_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BT72_9STRA) HSP 1 Score: 138 bits (347), Expect = 1.410e-39 Identity = 70/113 (61.95%), Postives = 83/113 (73.45%), Query Frame = 1
Query: 1 SCGGADLWAKTQAQYFAREVERRP-FLKVVSAIIKSELGGLVATSDLNQWQETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTVEMWAEELRAANT 336
SCGGA+LW +T+ +YF RE +RP FL +V+AII S+L LV +S L W+ETLAILSTY K EEFP LCE L ARLE EA D SA LCYMCAV VPKTV+ W EEL + +
Sbjct: 18 SCGGAELWEQTRDRYFKREAAKRPEFLNIVTAIITSKLSDLVTSSHLADWRETLAILSTYGKSEEFPILCEQLGARLEAEADDKASAALCYMCAVNVPKTVKFWIEELNKSRS 130
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Match: A0A7S0BZ92_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BZ92_9STRA) HSP 1 Score: 139 bits (349), Expect = 4.680e-39 Identity = 69/112 (61.61%), Postives = 83/112 (74.11%), Query Frame = 1
Query: 1 SCGGADLWAKTQAQYFAREVERRPFLKVVSAIIKSELGGLVATSDLNQWQETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTVEMWAEELRAANT 336
SCGGA+LWAKTQAQYF REV +RP+L+VVSA+I S+L V SD QWQETLAILSTY K EEF LC AL RLE EAGD +A+LCYMCA+ + W ++L+ A+T
Sbjct: 24 SCGGAELWAKTQAQYFDREVSKRPYLRVVSAVIHSQLAEFVQASDPLQWQETLAILSTYGKSEEFQSLCHALGTRLE-EAGDMPNASLCYMCALDYDSASKYWRQQLQEAST 134
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Match: F0YCL1_AURAN (Sec16_C domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCL1_AURAN) HSP 1 Score: 145 bits (365), Expect = 5.110e-38 Identity = 70/111 (63.06%), Postives = 85/111 (76.58%), Query Frame = 1
Query: 1 SCGGADLWAKTQAQYFAREVERRPFLKVVSAIIKSELGGLVATSDLNQWQETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTVEMWAEELRAAN 333
SCGGA+LW +T+A+YF + +PFL VV AII +ELG LVA SDL +W+ETLAILSTY K +EFP LCEAL RLE EA D K+A LCYMCAV VPKTV+ W ++ AA+
Sbjct: 618 SCGGAELWERTRARYFDISSKAKPFLGVVRAIITNELGALVAASDLRKWEETLAILSTYGKSDEFPALCEALGGRLEHEARDDKAAALCYMCAVNVPKTVKFWIDDFNAAS 728
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Match: A0A7S4EAB3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EAB3_9STRA) HSP 1 Score: 142 bits (357), Expect = 8.280e-37 Identity = 70/114 (61.40%), Postives = 85/114 (74.56%), Query Frame = 1
Query: 1 SCGGADLWAKTQAQYFAREVERRPFLKVVSAIIKSELGGLVATSDLNQWQETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTVEMWAEELRAA-NTA 339
SCGGA+LW KT+A+YF + +RPFL VV AII +EL LV T+DLN+W+ETLAILSTY K EEFP+LCEAL RLE+E D +A+LCYMCAV V KTV W + + NTA
Sbjct: 577 SCGGAELWEKTRARYFEKAARKRPFLGVVRAIITNELDQLVQTADLNKWEETLAILSTYGKSEEFPQLCEALGQRLENEKRDQTAASLCYMCAVNVAKTVSFWISDYKKQENTA 690
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Match: A0A6V2GAE0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2GAE0_9STRA) HSP 1 Score: 138 bits (348), Expect = 1.340e-35 Identity = 68/111 (61.26%), Postives = 86/111 (77.48%), Query Frame = 1
Query: 1 SCGGADLWAKTQAQYFAREVERRPFLKVVSAIIKSELGGLVATSDLNQWQETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTVEMWAEELRAAN 333
SCGGA+LWAKTQA+YFARE ++RPFL +VSA+I ++L LVA SD ++WQETLAILSTY K EEFP LC AL RLE AGD SA+LC+MCA+ + + V+ W +L A+
Sbjct: 545 SCGGAELWAKTQAEYFAREAQKRPFLSIVSAVIHNQLEDLVAASDPSKWQETLAILSTYGKSEEFPLLCLALGNRLEG-AGDGASASLCFMCALNLDRAVKHWKTQLEKAD 654
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Match: A0A7S4VZF3_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VZF3_9STRA) HSP 1 Score: 138 bits (348), Expect = 1.360e-35 Identity = 68/111 (61.26%), Postives = 86/111 (77.48%), Query Frame = 1
Query: 1 SCGGADLWAKTQAQYFAREVERRPFLKVVSAIIKSELGGLVATSDLNQWQETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTVEMWAEELRAAN 333
SCGGA+LWAKTQA+YFARE ++RPFL +VSA+I ++L LVA SD ++WQETLAILSTY K EEFP LC AL RLE AGD SA+LC+MCA+ + + V+ W +L A+
Sbjct: 545 SCGGAELWAKTQAEYFAREAQKRPFLSIVSAVIHNQLEDLVAASDPSKWQETLAILSTYGKSEEFPLLCLALGNRLEG-AGDGASASLCFMCALNLDRAVKHWKTQLEKAD 654 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig136587.2580.1 >prot_H-elongata_contig136587.2580.1 ID=prot_H-elongata_contig136587.2580.1|Name=mRNA_H-elongata_contig136587.2580.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp SCGGADLWAKTQAQYFAREVERRPFLKVVSAIIKSELGGLVATSDLNQWQback to top mRNA from alignment at H-elongata_contig136587:343..1174- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig136587.2580.1 ID=mRNA_H-elongata_contig136587.2580.1|Name=mRNA_H-elongata_contig136587.2580.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=832bp|location=Sequence derived from alignment at H-elongata_contig136587:343..1174- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig136587:343..1174- >mRNA_H-elongata_contig136587.2580.1 ID=mRNA_H-elongata_contig136587.2580.1|Name=mRNA_H-elongata_contig136587.2580.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig136587:343..1174- (Himanthalia elongata Himel1 dioecious)back to top |