mRNA_H-elongata_contig136587.2580.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136587.2580.1
Unique NamemRNA_H-elongata_contig136587.2580.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Match: D8LBR5_ECTSI (Vesicle coat complex COPII, subunit SEC31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR5_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 9.300e-60
Identity = 103/119 (86.55%), Postives = 109/119 (91.60%), Query Frame = 1
Query:    1 SCGGADLWAKTQAQYFAREVERRPFLKVVSAIIKSELGGLVATSDLNQWQETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTVEMWAEELRAANTAIHGGTD 357
            SCGGADLWAKTQAQYFARE  +RPFLKVV+AIIKSELG LV  SDL QWQETLAILSTYAKQEEFP LCEALA+RLE EAGD KSANLCYMCAVKVPKTVEMWAEEL++AN AI+GGTD
Sbjct:  425 SCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGVLVEGSDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTD 543          
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Match: A0A6H5KCD9_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD9_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 3.580e-59
Identity = 102/119 (85.71%), Postives = 109/119 (91.60%), Query Frame = 1
Query:    1 SCGGADLWAKTQAQYFAREVERRPFLKVVSAIIKSELGGLVATSDLNQWQETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTVEMWAEELRAANTAIHGGTD 357
            SCGGADLWAKTQAQYFARE  +RPFLKVV+AIIKSELG LV  SDL QWQETLAILSTYAKQEEFP LCEALA+RLE EAGD KSANLCYMCAVKVPKTVEMWA+EL++AN AI+GGTD
Sbjct:  646 SCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGVLVDASDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWADELKSANAAINGGTD 764          
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Match: A0A7S3UX94_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX94_HETAK)

HSP 1 Score: 152 bits (384), Expect = 3.970e-44
Identity = 76/113 (67.26%), Postives = 87/113 (76.99%), Query Frame = 1
Query:    1 SCGGADLWAKTQAQYFAREVERRPFLKVVSAIIKSELGGLVATSDLNQWQETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTVEMWAEELRAANTA 339
            SCGGA+LWA TQA+YF     RRPFL +++ IIKSELG LV  + L  W+ETLAILSTYAK +EFP LCEALAARLE EA D  +A LCYMCAV VPKTV +W  +LRAAN A
Sbjct:   51 SCGGAELWASTQARYFEAAGTRRPFLDLMACIIKSELGELVGANALGAWEETLAILSTYAKSDEFPVLCEALAARLEGEARDAAAATLCYMCAVNVPKTVGVWLRDLRAANLA 163          
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Match: A0A7S2Y0E2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0E2_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.520e-42
Identity = 78/111 (70.27%), Postives = 83/111 (74.77%), Query Frame = 1
Query:    1 SCGGADLWAKTQAQYFAREVERRPFLKVVSAIIKSELGGLVATSDLNQWQETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTVEMWAEELRAAN 333
            SCGGADLWAKTQAQYF  E   RPFL +VSAII+SEL  LV TS L  WQETLAILSTYAK EEFP LCE LA RLE E+ D  SA LCYMCAV V KTV+ W +EL   N
Sbjct:  100 SCGGADLWAKTQAQYFETEGAYRPFLNIVSAIIRSELSKLVTTSKLTSWQETLAILSTYAKSEEFPGLCENLAERLESESFDVASATLCYMCAVNVHKTVQTWLDELHQVN 210          
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Match: A0A7S2BT72_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BT72_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.410e-39
Identity = 70/113 (61.95%), Postives = 83/113 (73.45%), Query Frame = 1
Query:    1 SCGGADLWAKTQAQYFAREVERRP-FLKVVSAIIKSELGGLVATSDLNQWQETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTVEMWAEELRAANT 336
            SCGGA+LW +T+ +YF RE  +RP FL +V+AII S+L  LV +S L  W+ETLAILSTY K EEFP LCE L ARLE EA D  SA LCYMCAV VPKTV+ W EEL  + +
Sbjct:   18 SCGGAELWEQTRDRYFKREAAKRPEFLNIVTAIITSKLSDLVTSSHLADWRETLAILSTYGKSEEFPILCEQLGARLEAEADDKASAALCYMCAVNVPKTVKFWIEELNKSRS 130          
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Match: A0A7S0BZ92_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BZ92_9STRA)

HSP 1 Score: 139 bits (349), Expect = 4.680e-39
Identity = 69/112 (61.61%), Postives = 83/112 (74.11%), Query Frame = 1
Query:    1 SCGGADLWAKTQAQYFAREVERRPFLKVVSAIIKSELGGLVATSDLNQWQETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTVEMWAEELRAANT 336
            SCGGA+LWAKTQAQYF REV +RP+L+VVSA+I S+L   V  SD  QWQETLAILSTY K EEF  LC AL  RLE EAGD  +A+LCYMCA+      + W ++L+ A+T
Sbjct:   24 SCGGAELWAKTQAQYFDREVSKRPYLRVVSAVIHSQLAEFVQASDPLQWQETLAILSTYGKSEEFQSLCHALGTRLE-EAGDMPNASLCYMCALDYDSASKYWRQQLQEAST 134          
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Match: F0YCL1_AURAN (Sec16_C domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCL1_AURAN)

HSP 1 Score: 145 bits (365), Expect = 5.110e-38
Identity = 70/111 (63.06%), Postives = 85/111 (76.58%), Query Frame = 1
Query:    1 SCGGADLWAKTQAQYFAREVERRPFLKVVSAIIKSELGGLVATSDLNQWQETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTVEMWAEELRAAN 333
            SCGGA+LW +T+A+YF    + +PFL VV AII +ELG LVA SDL +W+ETLAILSTY K +EFP LCEAL  RLE EA D K+A LCYMCAV VPKTV+ W ++  AA+
Sbjct:  618 SCGGAELWERTRARYFDISSKAKPFLGVVRAIITNELGALVAASDLRKWEETLAILSTYGKSDEFPALCEALGGRLEHEARDDKAAALCYMCAVNVPKTVKFWIDDFNAAS 728          
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Match: A0A7S4EAB3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EAB3_9STRA)

HSP 1 Score: 142 bits (357), Expect = 8.280e-37
Identity = 70/114 (61.40%), Postives = 85/114 (74.56%), Query Frame = 1
Query:    1 SCGGADLWAKTQAQYFAREVERRPFLKVVSAIIKSELGGLVATSDLNQWQETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTVEMWAEELRAA-NTA 339
            SCGGA+LW KT+A+YF +   +RPFL VV AII +EL  LV T+DLN+W+ETLAILSTY K EEFP+LCEAL  RLE+E  D  +A+LCYMCAV V KTV  W  + +   NTA
Sbjct:  577 SCGGAELWEKTRARYFEKAARKRPFLGVVRAIITNELDQLVQTADLNKWEETLAILSTYGKSEEFPQLCEALGQRLENEKRDQTAASLCYMCAVNVAKTVSFWISDYKKQENTA 690          
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Match: A0A6V2GAE0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2GAE0_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.340e-35
Identity = 68/111 (61.26%), Postives = 86/111 (77.48%), Query Frame = 1
Query:    1 SCGGADLWAKTQAQYFAREVERRPFLKVVSAIIKSELGGLVATSDLNQWQETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTVEMWAEELRAAN 333
            SCGGA+LWAKTQA+YFARE ++RPFL +VSA+I ++L  LVA SD ++WQETLAILSTY K EEFP LC AL  RLE  AGD  SA+LC+MCA+ + + V+ W  +L  A+
Sbjct:  545 SCGGAELWAKTQAEYFAREAQKRPFLSIVSAVIHNQLEDLVAASDPSKWQETLAILSTYGKSEEFPLLCLALGNRLEG-AGDGASASLCFMCALNLDRAVKHWKTQLEKAD 654          
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Match: A0A7S4VZF3_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VZF3_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.360e-35
Identity = 68/111 (61.26%), Postives = 86/111 (77.48%), Query Frame = 1
Query:    1 SCGGADLWAKTQAQYFAREVERRPFLKVVSAIIKSELGGLVATSDLNQWQETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTVEMWAEELRAAN 333
            SCGGA+LWAKTQA+YFARE ++RPFL +VSA+I ++L  LVA SD ++WQETLAILSTY K EEFP LC AL  RLE  AGD  SA+LC+MCA+ + + V+ W  +L  A+
Sbjct:  545 SCGGAELWAKTQAEYFAREAQKRPFLSIVSAVIHNQLEDLVAASDPSKWQETLAILSTYGKSEEFPLLCLALGNRLEG-AGDGASASLCFMCALNLDRAVKHWKTQLEKAD 654          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136587.2580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBR5_ECTSI9.300e-6086.55Vesicle coat complex COPII, subunit SEC31 n=1 Tax=... [more]
A0A6H5KCD9_9PHAE3.580e-5985.71WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S3UX94_HETAK3.970e-4467.26Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2Y0E2_9STRA1.520e-4270.27Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2BT72_9STRA1.410e-3961.95Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S0BZ92_9STRA4.680e-3961.61Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
F0YCL1_AURAN5.110e-3863.06Sec16_C domain-containing protein (Fragment) n=1 T... [more]
A0A7S4EAB3_9STRA8.280e-3761.40Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A6V2GAE0_9STRA1.340e-3561.26Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4VZF3_9STRA1.360e-3561.26Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136587contigH-elongata_contig136587:343..1174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.4
Seed ortholog evalue1.9e-51
Seed eggNOG ortholog2880.D8LBR5
KEGG koko:K14005
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
GOsGO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016192,GO:0033036,GO:0034613,GO:0042886,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsKOG0307@1,KOG0307@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929810.716513-CDS-H-elongata_contig136587:342..4271622929810.716513-CDS-H-elongata_contig136587:342..427Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136587 343..427 -
1691679166.4623396-CDS-H-elongata_contig136587:342..4271691679166.4623396-CDS-H-elongata_contig136587:342..427Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136587 343..427 -
1622929810.7303233-CDS-H-elongata_contig136587:902..11741622929810.7303233-CDS-H-elongata_contig136587:902..1174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136587 903..1174 -
1691679166.4755409-CDS-H-elongata_contig136587:902..11741691679166.4755409-CDS-H-elongata_contig136587:902..1174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136587 903..1174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136587.2580.1prot_H-elongata_contig136587.2580.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136587 343..1174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136587.2580.1

>prot_H-elongata_contig136587.2580.1 ID=prot_H-elongata_contig136587.2580.1|Name=mRNA_H-elongata_contig136587.2580.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
SCGGADLWAKTQAQYFAREVERRPFLKVVSAIIKSELGGLVATSDLNQWQ
ETLAILSTYAKQEEFPELCEALAARLEDEAGDWKSANLCYMCAVKVPKTV
EMWAEELRAANTAIHGGTD
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mRNA from alignment at H-elongata_contig136587:343..1174-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136587.2580.1 ID=mRNA_H-elongata_contig136587.2580.1|Name=mRNA_H-elongata_contig136587.2580.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=832bp|location=Sequence derived from alignment at H-elongata_contig136587:343..1174- (Himanthalia elongata Himel1 dioecious)
AGCTGCGGAGGCGCAGACCTGTGGGCTAAGACCCAGGCCCAGTACTTCGC GCGCGAGGTCGAGCGCCGGCCTTTCCTCAAGGTGGTTAGCGCCATCATCA AGTCGGAGCTCGGGGGGCTCGTGGCAACCTCGGACCTGAACCAATGGCAG GAGACGCTCGCCATCCTCTCCACGTACGCCAAGCAAGAGGAGTTCCCGGA GCTGTGTGAGGCGTTGGCAGCGCGGCTGGAGGACGAGGCCGGCGACTGGA AGTCGGCCAACCTGTGTTACATGTAAGAAAGAGAGAGGCTGTCCTTGTTA CGGTAGAGGGAAAGTTTGCTATTGGCCGTCGGCTGAATTGTGGAATTGTC TTCTGTCTTCTGTCTTCTGCACCGGTACTCGACTGAATTGCCGTTTTCGA TCGTTTTACCGTGCGGCTGAGCTTGAGGGAAAAACAAAACAAAACAAAAA GCTAGTTATATTTTTTATGCAGTTCGTGTTTCGTGTGGCGTTTCACGCTG GTTAGCTTCTGCAGGTAAAAACGTCGGGAAAAAAACGAAATAAAAAAAAA AGTTGATTGCGCGACCGTAATTCAGGTGAGGAAGAGTTCTGGTAAAACTC CCGTCGAAAAAAGGGAAAAAAATAGGAAAGGTAACCTTGTATAGGTAGAT TGAGGGGGGGGAAATAAGATGGCCCAAAGTAAATGTAACCGTTACGGTAA CGATGATAACGCTATTCCTCTTTATAAACCATATAAACCCTTTACAGGTG TGCGGTAAAGGTGCCCAAGACGGTGGAGATGTGGGCTGAGGAGCTGCGCG CCGCCAACACCGCCATACACGGAGGGACGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig136587:343..1174-

>mRNA_H-elongata_contig136587.2580.1 ID=mRNA_H-elongata_contig136587.2580.1|Name=mRNA_H-elongata_contig136587.2580.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig136587:343..1174- (Himanthalia elongata Himel1 dioecious)
AGCTGCGGAGGCGCAGACCTGTGGGCTAAGACCCAGGCCCAGTACTTCGC
GCGCGAGGTCGAGCGCCGGCCTTTCCTCAAGGTGGTTAGCGCCATCATCA
AGTCGGAGCTCGGGGGGCTCGTGGCAACCTCGGACCTGAACCAATGGCAG
GAGACGCTCGCCATCCTCTCCACGTACGCCAAGCAAGAGGAGTTCCCGGA
GCTGTGTGAGGCGTTGGCAGCGCGGCTGGAGGACGAGGCCGGCGACTGGA
AGTCGGCCAACCTGTGTTACATAGCTGCGGAGGCGCAGACCTGTGGGCTA
AGACCCAGGCCCAGTACTTCGCGCGCGAGGTCGAGCGCCGGCCTTTCCTC
AAGGTGGTTAGCGCCATCATCAAGTCGGAGCTCGGGGGGCTCGTGGCAAC
CTCGGACCTGAACCAATGGCAGGAGACGCTCGCCATCCTCTCCACGTACG
CCAAGCAAGAGGAGTTCCCGGAGCTGTGTGAGGCGTTGGCAGCGCGGCTG
GAGGACGAGGCCGGCGACTGGAAGTCGGCCAACCTGTGTTACATGTGTGC
GGTAAAGGTGCCCAAGACGGTGGAGATGTGGGCTGAGGAGCTGCGCGCCG
CCAACACCGCCATACACGGAGGGACGGACGTGTGCGGTAAAGGTGCCCAA
GACGGTGGAGATGTGGGCTGAGGAGCTGCGCGCCGCCAACACCGCCATAC
ACGGAGGGACGGAC
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