mRNA_H-elongata_contig13658.2578.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13658.2578.1
Unique NamemRNA_H-elongata_contig13658.2578.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig13658.2578.1 vs. uniprot
Match: A0A6H5L8S0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8S0_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 1.460e-46
Identity = 113/221 (51.13%), Postives = 132/221 (59.73%), Query Frame = 2 
Query:   86 AWAWRYVNVEKKSLMVWSRRGGQLLRSIPLHDVDSLTVIPDTKNLASVLEVHLASNVSGAACGDG---GSGDVASGVPSAGDRRGSGGNEA-------------------GVLILQARSRRETFLWAKVLQENVELLTKRHVSLENLDEETSLGDVEQLAKLLTHQLSELQQSGDGDRV---------------FNRSTGASTKRKPVLQGVHESIPEGAE 637
            AWAWRYVNVEKK L+VW RRGG+LLRSI L D++SL VIPD    AS+LEV+++S  +     +G   G G   S +  AGD    G  EA                    VL+LQARSRRET LWAKVLQENVEL+TKR V LEN DEETSL DV+QLAKLLTHQLSELQ SG  +                  N S+  + K +  L G   SIPEGA+
Sbjct:  128 AWAWRYVNVEKKKLLVWDRRGGRLLRSISLRDIESLLVIPDEGAPASILEVYISSPSNSGGASNGTVTGDGSENSPIEGAGDE---GEEEAQXXXXXXXXXXXXXXXXXXXVLVLQARSRRETLLWAKVLQENVELMTKRQVPLENRDEETSLSDVQQLAKLLTHQLSELQDSGINNSKNXXXXXXXXXXXXSKVNTSSPEAPKHRLGLFGADSSIPEGAD 345
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13658.2578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L8S0_9PHAE1.460e-4651.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13658contigH-elongata_contig13658:839..5001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_002830.1
Exons4
Model size1420
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13658.2578.1prot_H-elongata_contig13658.2578.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13658 1601..4874 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929810.5184112-UTR-H-elongata_contig13658:838..16001622929810.5184112-UTR-H-elongata_contig13658:838..1600Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13658 839..1600 -
1691679166.3628354-UTR-H-elongata_contig13658:838..16001691679166.3628354-UTR-H-elongata_contig13658:838..1600Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13658 839..1600 -
1622929810.6037958-UTR-H-elongata_contig13658:4874..50011622929810.6037958-UTR-H-elongata_contig13658:4874..5001Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13658 4875..5001 -
1691679166.414579-UTR-H-elongata_contig13658:4874..50011691679166.414579-UTR-H-elongata_contig13658:4874..5001Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13658 4875..5001 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929810.5411713-CDS-H-elongata_contig13658:1600..17651622929810.5411713-CDS-H-elongata_contig13658:1600..1765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13658 1601..1765 -
1691679166.3733397-CDS-H-elongata_contig13658:1600..17651691679166.3733397-CDS-H-elongata_contig13658:1600..1765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13658 1601..1765 -
1622929810.5605714-CDS-H-elongata_contig13658:2689..27701622929810.5605714-CDS-H-elongata_contig13658:2689..2770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13658 2690..2770 -
1691679166.3813283-CDS-H-elongata_contig13658:2689..27701691679166.3813283-CDS-H-elongata_contig13658:2689..2770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13658 2690..2770 -
1622929810.5755577-CDS-H-elongata_contig13658:3942..41431622929810.5755577-CDS-H-elongata_contig13658:3942..4143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13658 3943..4143 -
1691679166.3908098-CDS-H-elongata_contig13658:3942..41431691679166.3908098-CDS-H-elongata_contig13658:3942..4143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13658 3943..4143 -
1622929810.5903585-CDS-H-elongata_contig13658:4790..48741622929810.5903585-CDS-H-elongata_contig13658:4790..4874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13658 4791..4874 -
1691679166.397938-CDS-H-elongata_contig13658:4790..48741691679166.397938-CDS-H-elongata_contig13658:4790..4874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13658 4791..4874 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13658.2578.1

>prot_H-elongata_contig13658.2578.1 ID=prot_H-elongata_contig13658.2578.1|Name=mRNA_H-elongata_contig13658.2578.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp
MVWSRRGGQLLRSIPLHDVDSLTVIPDTKNLASVLEVHLASNVSGAACGD
GGSGDVASGVPSAGDRRGSGGNEAGVLILQARSRRETFLWAKVLQENVEL
LTKRHVSLENLDEETSLGDVEQLAKLLTHQLSELQQSGDGDRVFNRSTGA
STKRKPVLQGVHESIPEGAEDPTSDS*
back to top

mRNA from alignment at H-elongata_contig13658:839..5001-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13658.2578.1 ID=mRNA_H-elongata_contig13658.2578.1|Name=mRNA_H-elongata_contig13658.2578.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4163bp|location=Sequence derived from alignment at H-elongata_contig13658:839..5001- (Himanthalia elongata Himel1 dioecious)
GCGTGGCGACAAGGAGAATGGGGCGGAGGATGAAGCGACGGGGGATGAAG
GCGAGGGGGTCGACAACTCGACCGCGACGGAGAATGCGTGGGCCTGGCGT
TACGTCAACGTCGAGAAGAAATCCTTGATGGTCTGGAGCAGAAGGGGAGG
TCAGCTGCTGAGATCGATCCCCCTTCACGACGTCGACAGTCTTACGGTTA
TACCCGATACGGTAAGTGCACACCTCTAAGGGTAAACCGGGCGAGGAGTG
AGGAAGAAATCCACACCAACGATAGGAGAGGGGGAGGGGTCGTTACATAA
TTATCCCCGCCCTTTTTGATGGAAGGGTCAAAATTTGTCCCCTCCCGGGG
ATCCAATCGCAGTATCCTCGGTCGTAGCGCTTCATATAGGATACATGATC
ACCGTAGGACAGGGGATGGACATACTTTGTCGCTGAAAGAAAAATAATTT
AACCCATCCTCTCCCCCCTATCGCTGGACTCGTTCGAAACGCCTGCTTCC
TCCGTCGGGCGGAAAATAGCTGGTTGTCTTGAGGTACGGGCGCCCCCTTT
AGAGACGAGCCCAAATTGAGCTTGCCCTATCCTTTGTGCGTTTGGTATGG
GTTTCGCCTTGCAGTCCAGCTAGTTGTATCCTTCACGAAGGGTGCCCACA
CCCACGTCGGTCTTTCGTGAACAGACAATGCTTGGTTAGCAGGGAGGGCT
AGAGATCTCTAACTATGTTGGCAAAAAAACAAACCGAAAATAAAGCAACC
GTCGATTTGTGCGTTGAATTGTAGTTCTCGCCGAGACGAAAGTCTCTTCC
CTCTTTGCTACACCTACTAATCCCTCTTTGCGCTTCGGCGGGGAAAAAAC
CCGCGAAGAAAAATCTTGCGAGCGTGTTGGAGGTTCATCTCGCCTCCAAC
GTTTCGGGCGCTGCTTGCGGGGACGGCGGTAGCGGCGACGTCGCGAGTGG
TGTGCCGAGCGCGGGGGATAGGCGTGGGAGTGGCGGTAACGAGGCCGGTG
TTCTCATTCTGCAAGCGAGGTCAAGGCGGGAGACGTTTCTATGGGCAAAA
GTGCTCCAGGTGAGGGTGTTTACGATCGGGCCTTGCTGCCCACATGCCCA
CGTCTCGTTCGCCATAGCGTTGACGGGAACATATCTTCCTTCAATGCTGT
GAATTTTCTTCGTGGCTGAAAATACGTCTACCCCCCCCCCCGGCATGGGG
GAGTTAGTTGATATAGCGTCCATCCTGTGAGCTCCGAGACCTCGGGTCGA
AGAAGCTTGTCTCTCCTCAAATGGGGGAAAGGCACAATATTCTATAGAAT
GTGTGCTGAACAATGTATCTCTGGGAATCCCTAGAGCAACCATAGAATTG
GTGAGAGTAATCCGCCCGTAGTGTTCATGAGCAAATTGTAGTCTTCAATG
TATCACATGAACACCGCTGGGTATTGTGTGTGCGGCGCTTATGCGTGCGC
GTTGAGATCAAAGTTCCTTTGCGATGCTAGGAGTATAGTAGTAGTATAAA
TAAACATAACATATTATATAATATTTTGCCTACGTCTAATAACTATTTAC
ATTTCAGCCCCTAATAAACCACAGTTACTTATTTATATATTATTAATAGT
AACATGAACATTAACATAATTATTATTACAATTTTTATTTGCTTATTCTT
CCTGTCTGTAGCCCCTTCCCTCTAACAATTTCATAGCTCACGTACCAATG
AATTTACTGCGATTCATCATGAGTGAAGATTTTGTAATCAAGGTTAGTAC
TGTATACATTCGAACCTGACGATAGTTGGTCCCCTGGACTACATCACTCA
TCATGGTGTTAAGAAGGCGTGGATGTTCGGAGGGTTGGAATGAGTTCGAG
TTTTTTTTTTTAATATTAATATAAATATATAGTAGAGTATACGGATACTA
TATTACAGTAGTCGCTACCCGCTGAATATGGAAGATTTAGTTACCCAGTA
TGTCCAATTAAACCTAAGGCATGTCCGATTTGACCAAGCAACCGCAAGGA
TAATGACTAAAAGCTGGTAGTATCCCTCTGACAGGCATCCTGTCCGGCGA
ACATCCGAAATTGTGGGGATGCGTGGCTATGCTCGTTAGGATATGACATA
CATTTAACCTGAAGTACCCCCCCTCCCCACTCCCTCCACTCCTCGGTCAC
AATTTTCCCCCAACGCCGCTTGTGCGCCCAAGTTTTTACTGCTTACGACT
GTGTGAATTTTCTCCGCTTTTTGTCGACCAGGAGAACGTGGAGCTCCTGA
CGAAACGCCACGTAAGTCTCGAAAACCTCGACGAGGAGACCAGCCTCGGT
GACGTAGAACAGGTGAGAATCATAGAATAATTGTCGCATATCTTGGGATA
CGTGGAGAGGATGCTTCGGCTTTTTGGGTGCTCTGCGTGGAAAAGTTTCC
ACGTGGCATGCTTGTCGCCCAAGGAATCTAATGGTAAAGACGGAAGTCGT
GCCTTCGATCCCCACAAGGATTGGTTCTTTTCTTCCTGTAGCGGTCATAG
TCCATGCTAATAATATTAGTAATTATAATAAAACGAAGTACTATTTTTAA
CTATGATCAGTGTAAAGTAGGAGAACGGGAGCAAGCAAACTCCAGCCATT
AGCTCTGGTTGACGAGATGTTATTCTCCAGCCGTTATAATCTTGAACGGG
AGTAACGAAAATTCAACCATTTTATAGTTGACGAGATGGAGTAGCGCTGA
AGCTGCATCGCAATAAAAAATTGAAGGCACGAATCAAGGAGAGGTGGGTT
GAGATCCCCGCGTGTGTTCTCTTTTTTGTGTTGCTTTTTCTTTGGAGATG
TCGCTCTCCCGAGTATTTGTATTATGCACCGCTTGCCGCTTCCTTTTGTA
TTGGCGAGTACGTTTGGACGTTTTCTTCTTCCGGATGGTGTTTTTTTTCT
ACCTTGTGGCCACAGGCTGGATTTTGACATCAGCGTGTTTTCAATCAAAT
AATTAGAGCCACGGACGGTAGGGGTGGATAAACGCTACCGTAGTTGGGAT
TGGTAACTTATCAATAGTTCACCATCGGCATACATTTATTATAAGGTATA
TAAATTCTACATACTGTAATATAGTATGTCATTATCTCGGCTAATCCGGA
GGCTATCATCTCATAGTGCCGCCGTAACTATAATAGCCCGGTCGGAAATG
ACAACAATGAAGCATCCACACCGCCACGGATACCTTTGACTCTGTCCGGC
CGTTAACCAGCACGTTTTCACCCGCTCTTCCCGCAGCTGGCAAAGCTTCT
CACGCACCAGCTTTCGGAGCTGCAGCAGTCAGGAGACGGCGACCGCGTTT
TCAATCGTTCCACAGGGGCGTCGACCAAGCGCAAACCCGTCTTGCAGGGT
GTACATGAGTCTATTCCCGAGGGCGCTGAAGACCCAACGAGCGATTCTTA
GCCTTAAACCATTGCGATTCCATGTGCATCTCGGCAGCGGTTGTGGGAGA
AGAAGCAGAATGGATTTCGTTCGAAGTACACATTCAATGATACGGCTTAG
AGGGACGCCAGTTTCGGCGTGAGCCGCTCCGCGTTAGAATTTAGCCTCTG
GTAAACGCTTAGGCTTCATTTGAAAGTAGCCTTCCTGAACTCCAGGACAT
TTCTCGAGAGGATGATTCGAGGACGGTTTTTGATACTTTTGTTAGGGGAG
AGTAGACGTGAAAGAACTCCCTGGTTCTCCTTCTTACTGTGAAGAAGGCA
TTTCACGTCGGTATGTCACATCCGTACGAAGAGCAAGCCCCGACGATGGA
GAGACTTTGTCAGGAGACGAAGCTGGTAATGCTGAAGATTTCCCATTCAT
TCAGCAGGAGCATATTTCTGCTGTACATCCTCAGTTGCTGTACATCCGCA
AGCGATCGCGCGACAGCTACTCTGCGCGCGCTGTCGATCACGCGGTTTGC
ATTTTCACGAGTTGAGAGGAGCGTCCCCCGGGTGTCGATTGCTCCGGTCC
CTGGCCCATCGGCGACGCTTTTTGTATCGATCACACAGAAGACGACGCGT
TCTAGATTAGGAGCGTTGAAAGGCCTACAAGCTCTTGGCGTCGGTTGTGT
TGCCTGAGTTGTTAGGATGTTTCTCTTCGCCGTTCAGTTTCTCGACCGTC
GACGGGAGGCTAATTCCGAAAGAAAAGATCGGGTTTTTTTTTACTGACTC
GTGAGATAAAATC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig13658:839..5001-

>mRNA_H-elongata_contig13658.2578.1 ID=mRNA_H-elongata_contig13658.2578.1|Name=mRNA_H-elongata_contig13658.2578.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at H-elongata_contig13658:839..5001- (Himanthalia elongata Himel1 dioecious)
ATGGTCTGGAGCAGAAGGGGAGGTCAGCTGCTGAGATCGATCCCCCTTCA
CGACGTCGACAGTCTTACGGTTATACCCGATACGATGGTCTGGAGCAGAA
GGGGAGGTCAGCTGCTGAGATCGATCCCCCTTCACGACGTCGACAGTCTT
ACGGTTATACCCGATACGAAAAATCTTGCGAGCGTGTTGGAGGTTCATCT
CGCCTCCAACGTTTCGGGCGCTGCTTGCGGGGACGGCGGTAGCGGCGACG
TCGCGAGTGGTGTGCCGAGCGCGGGGGATAGGCGTGGGAGTGGCGGTAAC
GAGGCCGGTGTTCTCATTCTGCAAGCGAGGTCAAGGCGGGAGACGTTTCT
ATGGGCAAAAGTGCTCCAGAAAAATCTTGCGAGCGTGTTGGAGGTTCATC
TCGCCTCCAACGTTTCGGGCGCTGCTTGCGGGGACGGCGGTAGCGGCGAC
GTCGCGAGTGGTGTGCCGAGCGCGGGGGATAGGCGTGGGAGTGGCGGTAA
CGAGGCCGGTGTTCTCATTCTGCAAGCGAGGTCAAGGCGGGAGACGTTTC
TATGGGCAAAAGTGCTCCAGGAGAACGTGGAGCTCCTGACGAAACGCCAC
GTAAGTCTCGAAAACCTCGACGAGGAGACCAGCCTCGGTGACGTAGAACA
GGAGAACGTGGAGCTCCTGACGAAACGCCACGTAAGTCTCGAAAACCTCG
ACGAGGAGACCAGCCTCGGTGACGTAGAACAGCTGGCAAAGCTTCTCACG
CACCAGCTTTCGGAGCTGCAGCAGTCAGGAGACGGCGACCGCGTTTTCAA
TCGTTCCACAGGGGCGTCGACCAAGCGCAAACCCGTCTTGCAGGGTGTAC
ATGAGTCTATTCCCGAGGGCGCTGAAGACCCAACGAGCGATTCTTAGCTG
GCAAAGCTTCTCACGCACCAGCTTTCGGAGCTGCAGCAGTCAGGAGACGG
CGACCGCGTTTTCAATCGTTCCACAGGGGCGTCGACCAAGCGCAAACCCG
TCTTGCAGGGTGTACATGAGTCTATTCCCGAGGGCGCTGAAGACCCAACG
AGCGATTCTTAG
back to top