mRNA_H-elongata_contig136542.2577.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136542.2577.1
Unique NamemRNA_H-elongata_contig136542.2577.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig136542.2577.1 vs. uniprot
Match: D8LDX3_ECTSI (Exocyst subunit Exo70 family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDX3_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 5.030e-12
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   25 RELYGTYEGVQFSKKHQEQYLKYTPDAIQEGIGHLFSG 138
            RELY  Y+ VQFSKKHQEQYLKY+PDAI +GIG LFSG
Sbjct:  794 RELYCKYQDVQFSKKHQEQYLKYSPDAIDQGIGQLFSG 831
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BLAST of mRNA_H-elongata_contig136542.2577.1 vs. uniprot
Match: A0A835YN31_9STRA (Exocyst subunit Exo70 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN31_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.080e-7
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   25 RELYGTYEGVQFSKKHQEQYLKYTPDAIQEGIGHLFSG 138
            R+LY TY+ V FSKKHQ +YLKY P+A+  GI  LF G
Sbjct:  707 RKLYDTYKDVPFSKKHQSEYLKYPPEAVDRGIEGLFQG 744
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BLAST of mRNA_H-elongata_contig136542.2577.1 vs. uniprot
Match: B7G2Z1_PHATC (Exocyst subunit Exo70 family protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G2Z1_PHATC)

HSP 1 Score: 49.3 bits (116), Expect = 1.680e-5
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 LSSLFL-NSRELYGTYEGVQFSKKHQEQYLKYTPDAIQEGIGHLFS 135
            ++SLFL   R+ Y  Y  ++FSKKHQE+Y KY+PD I + +G L++
Sbjct:  734 VASLFLPRYRKFYDKYTKLRFSKKHQEEYTKYSPDTIAKMLGELYT 779
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BLAST of mRNA_H-elongata_contig136542.2577.1 vs. uniprot
Match: A0A3F2RPA3_9STRA (Exocyst subunit Exo70 family protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RPA3_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 3.130e-5
Identity = 20/38 (52.63%), Postives = 25/38 (65.79%), Query Frame = 1 
Query:   25 RELYGTYEGVQFSKKHQEQYLKYTPDAIQEGIGHLFSG 138
            +  Y  Y  +QFSKKH  +YLKYTP A+Q  +  LFSG
Sbjct:  346 KTFYEKYSAIQFSKKHANRYLKYTPQAVQALLKELFSG 383
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136542.2577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LDX3_ECTSI5.030e-1278.95Exocyst subunit Exo70 family protein n=2 Tax=Ectoc... [more]
A0A835YN31_9STRA2.080e-760.53Exocyst subunit Exo70 family protein n=1 Tax=Tribo... [more]
B7G2Z1_PHATC1.680e-547.83Exocyst subunit Exo70 family protein n=1 Tax=Phaeo... [more]
A0A3F2RPA3_9STRA3.130e-552.63Exocyst subunit Exo70 family protein n=1 Tax=Phyto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136542contigH-elongata_contig136542:722..862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionExocyst complex protein Exo70
Ec32 orthologEc-23_003470.1
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929810.4669392-CDS-H-elongata_contig136542:721..8621622929810.4669392-CDS-H-elongata_contig136542:721..862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136542 722..862 +
1691679166.3537812-CDS-H-elongata_contig136542:721..8621691679166.3537812-CDS-H-elongata_contig136542:721..862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136542 722..862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136542.2577.1prot_H-elongata_contig136542.2577.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136542 722..862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136542.2577.1

>prot_H-elongata_contig136542.2577.1 ID=prot_H-elongata_contig136542.2577.1|Name=mRNA_H-elongata_contig136542.2577.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
LSSLFLNSRELYGTYEGVQFSKKHQEQYLKYTPDAIQEGIGHLFSG*
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mRNA from alignment at H-elongata_contig136542:722..862+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136542.2577.1 ID=mRNA_H-elongata_contig136542.2577.1|Name=mRNA_H-elongata_contig136542.2577.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig136542:722..862+ (Himanthalia elongata Himel1 dioecious)
TTGTCCTCTCTTTTCCTTAATTCCAGGGAGTTGTACGGGACGTATGAAGG
CGTACAGTTCAGCAAGAAGCATCAAGAACAATACCTCAAGTACACCCCCG
ACGCCATTCAAGAGGGGATTGGCCATCTTTTCTCGGGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig136542:722..862+

>mRNA_H-elongata_contig136542.2577.1 ID=mRNA_H-elongata_contig136542.2577.1|Name=mRNA_H-elongata_contig136542.2577.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig136542:722..862+ (Himanthalia elongata Himel1 dioecious)
TTGTCCTCTCTTTTCCTTAATTCCAGGGAGTTGTACGGGACGTATGAAGG
CGTACAGTTCAGCAAGAAGCATCAAGAACAATACCTCAAGTACACCCCCG
ACGCCATTCAAGAGGGGATTGGCCATCTTTTCTCGGGATGATTGTCCTCT
CTTTTCCTTAATTCCAGGGAGTTGTACGGGACGTATGAAGGCGTACAGTT
CAGCAAGAAGCATCAAGAACAATACCTCAAGTACACCCCCGACGCCATTC
AAGAGGGGATTGGCCATCTTTTCTCGGGATGA
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