mRNA_H-elongata_contig13649.2574.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13649.2574.1
Unique NamemRNA_H-elongata_contig13649.2574.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig13649.2574.1 vs. uniprot
Match: A0A6H5LPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPP1_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 9.690e-49
Identity = 86/102 (84.31%), Postives = 94/102 (92.16%), Query Frame = 1 
Query:  103 RFAQNEFEHGSVERGRLVFEGLMSSYPKRLDLWNVYLDKEVKAGEVRAARNIHERLIHLDLNAKRMKGVFKKYLQFEMDHGDQAGVEAVKVKAKEYVASLAG 408
            RFAQNEFEHGSVERGR VFEGLM+SYPKRLDLWNVYLDKEVKAG++RAARN+ ERL  +D NAKRMKGVFKKYLQFEM+HGD+AGV AVK KA +YVASLAG
Sbjct: 2297 RFAQNEFEHGSVERGRSVFEGLMASYPKRLDLWNVYLDKEVKAGDLRAARNLLERLSGMDFNAKRMKGVFKKYLQFEMEHGDEAGVNAVKAKATQYVASLAG 2398
[Close]
BLAST of mRNA_H-elongata_contig13649.2574.1 vs. uniprot
Match: D7FRR9_ECTSI (rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR9_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 1.160e-47
Identity = 85/102 (83.33%), Postives = 92/102 (90.20%), Query Frame = 1 
Query:  103 RFAQNEFEHGSVERGRLVFEGLMSSYPKRLDLWNVYLDKEVKAGEVRAARNIHERLIHLDLNAKRMKGVFKKYLQFEMDHGDQAGVEAVKVKAKEYVASLAG 408
            RFAQNEFEHGSVERGR VFEGLM+SYPKRLDLWNVY DKEVKAG++RAARN+ ERL  +D NAKRMKGVFKKYLQFEM+HGD+A V AVK KA EYVASLAG
Sbjct: 2243 RFAQNEFEHGSVERGRSVFEGLMASYPKRLDLWNVYFDKEVKAGDLRAARNLLERLTGMDFNAKRMKGVFKKYLQFEMEHGDEARVNAVKAKATEYVASLAG 2344
[Close]
BLAST of mRNA_H-elongata_contig13649.2574.1 vs. uniprot
Match: A0A7S3UYU4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYU4_HETAK)

HSP 1 Score: 131 bits (329), Expect = 5.390e-33
Identity = 61/101 (60.40%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:  103 RFAQNEFEHGSVERGRLVFEGLMSSYPKRLDLWNVYLDKEVKAGEVRAARNIHERLIHLDLNAKRMKGVFKKYLQFEMDHGDQAGVEAVKVKAKEYVASLA 405
            RFA  E++HGS ERGR + EGL+ SYPKRLDLWN Y+D+E+K G +  AR + ER+I L L+  +MK VFKKYL+FEM+HGD+   E VK KA+EYV SLA
Sbjct:  496 RFAHLEYDHGSAERGRTILEGLVGSYPKRLDLWNQYVDREIKQGNLPEARAVFERMISLSLSPHKMKNVFKKYLRFEMEHGDEEKAEEVKAKAQEYVRSLA 596
[Close]
BLAST of mRNA_H-elongata_contig13649.2574.1 vs. uniprot
Match: A0A7S2H4N6_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H4N6_9STRA)

HSP 1 Score: 129 bits (323), Expect = 6.210e-32
Identity = 64/105 (60.95%), Postives = 78/105 (74.29%), Query Frame = 1 
Query:   88 IFFSFRFAQNEFEHGSVERGRLVFEGLMSSYPKRLDLWNVYLDKEVKAGEVRAARNIHERLIHLDLNAKRMKGVFKKYLQFEMDHGDQAGVEAVKVKAKEYVASL 402
            ++   + AQ EF  GSVERGR VFEGL+SSYPKR+DLWNVY+DKEVKAG + AARN+ ERL+ L L+ K++K  FKK+L FE  HGD   +  VK KAKEYV  L
Sbjct:  745 VYVVSQLAQFEFAIGSVERGRTVFEGLLSSYPKRVDLWNVYVDKEVKAGNIPAARNLFERLVTLKLSKKQVKASFKKWLSFETRHGDDEKLNVVKSKAKEYVQRL 849
[Close]
BLAST of mRNA_H-elongata_contig13649.2574.1 vs. uniprot
Match: W7TCI2_9STRA (Rrna biogenesis protein rrp5 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCI2_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.680e-31
Identity = 59/98 (60.20%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:  106 FAQNEFEHGSVERGRLVFEGLMSSYPKRLDLWNVYLDKEVKAGEVRAARNIHERLIHLDLNAKRMKGVFKKYLQFEMDHGDQAGVEAVKVKAKEYVAS 399
            +AQ EFEHGSV+RGR +F+GL+SS+PKRLDLWN+Y+DKEVK+G + AAR + +R+  L L+A++MK V KKY+Q E+ HGD   VE VK KA+E+V S
Sbjct: 2144 YAQAEFEHGSVDRGRTIFDGLLSSFPKRLDLWNMYVDKEVKSGHIEAARRLLDRMCTLRLSAQKMKNVMKKYVQLELVHGDIQSVERVKSKAREFVES 2241
[Close]
BLAST of mRNA_H-elongata_contig13649.2574.1 vs. uniprot
Match: H3GCA3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GCA3_PHYRM)

HSP 1 Score: 120 bits (301), Expect = 6.060e-29
Identity = 54/101 (53.47%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:  103 RFAQNEFEHGSVERGRLVFEGLMSSYPKRLDLWNVYLDKEVKAGEVRAARNIHERLIHLDLNAKRMKGVFKKYLQFEMDHGDQAGVEAVKVKAKEYVASLA 405
            ++ Q  +EHG +++ R +FEG++++YPKR+DLWNVYLDKE+K G+V   R + ERL+ ++ +AK+MK +FKKYLQFE D GD   VE VK  AK++VAS A
Sbjct: 1838 KYGQLLYEHGELDKARTIFEGILANYPKRMDLWNVYLDKEIKFGDVALVRALFERLLAMEFSAKKMKFLFKKYLQFEQDQGDDEHVEHVKQLAKDFVASAA 1938
[Close]
BLAST of mRNA_H-elongata_contig13649.2574.1 vs. uniprot
Match: A0A7S3MHV7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHV7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 6.660e-29
Identity = 53/101 (52.48%), Postives = 74/101 (73.27%), Query Frame = 1 
Query:  103 RFAQNEFEHGSVERGRLVFEGLMSSYPKRLDLWNVYLDKEVKAGEVRAARNIHERLIHLDLNAKRMKGVFKKYLQFEMDHGDQAGVEAVKVKAKEYVASLA 405
            ++A +EF+ GS +R R+VFE L+++YPKR DLW++Y+DKEVK G +  AR + ER+I     A+ MK VFKKYL FE+ HG +   E VK KA+EYV+S+A
Sbjct:   76 KYAMSEFDFGSPDRARVVFEDLLTTYPKRTDLWHLYVDKEVKLGNIIQARQLFERMIASKTKAQNMKTVFKKYLAFEISHGTEETQELVKQKAREYVSSIA 176
[Close]
BLAST of mRNA_H-elongata_contig13649.2574.1 vs. uniprot
Match: A0A2R6XEU3_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XEU3_MARPO)

HSP 1 Score: 119 bits (299), Expect = 1.130e-28
Identity = 55/97 (56.70%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:  118 EFEHGSVERGRLVFEGLMSSYPKRLDLWNVYLDKEVKAGEVRAARNIHERLIHLDLNAKRMKGVFKKYLQFEMDHGDQAGVEAVKVKAKEYVASLAG 408
            EF+HGS ERGR +FEG++ +YPKRLDLW+VYLD+E++ G+V   R + ER + L+L  K+MK +FK+YL FE  HGD+A VE VK KA EYV +  G
Sbjct: 1889 EFKHGSPERGRAIFEGIVRNYPKRLDLWSVYLDQEIRVGDVDIVRALFERAVLLELQPKKMKTLFKRYLDFEKTHGDEARVEYVKTKAMEYVENKLG 1985
[Close]
BLAST of mRNA_H-elongata_contig13649.2574.1 vs. uniprot
Match: A0A0W8DSU2_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DSU2_PHYNI)

HSP 1 Score: 119 bits (297), Expect = 2.060e-28
Identity = 54/101 (53.47%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:  103 RFAQNEFEHGSVERGRLVFEGLMSSYPKRLDLWNVYLDKEVKAGEVRAARNIHERLIHLDLNAKRMKGVFKKYLQFEMDHGDQAGVEAVKVKAKEYVASLA 405
            ++ Q  +E G +++ R +FEG++++YPKR+DLWNVYLDKE+K G+V   R + ERL+ +D +AK+MK +FKKYLQFE D GD   VE VK  AK++VAS A
Sbjct: 1255 KYGQLLYEQGELDKARTIFEGILANYPKRMDLWNVYLDKEIKFGDVALVRALFERLLAMDFSAKKMKFLFKKYLQFEQDQGDDEHVEHVKQLAKDFVASAA 1355
[Close]
BLAST of mRNA_H-elongata_contig13649.2574.1 vs. uniprot
Match: W2QFF6_PHYPN (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2QFF6_PHYPN)

HSP 1 Score: 119 bits (297), Expect = 2.100e-28
Identity = 54/101 (53.47%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:  103 RFAQNEFEHGSVERGRLVFEGLMSSYPKRLDLWNVYLDKEVKAGEVRAARNIHERLIHLDLNAKRMKGVFKKYLQFEMDHGDQAGVEAVKVKAKEYVASLA 405
            ++ Q  +E G +++ R +FEG++++YPKR+DLWNVYLDKE+K G+V   R + ERL+ +D +AK+MK +FKKYLQFE D GD   VE VK  AK++VAS A
Sbjct: 1832 KYGQLLYEQGELDKARTIFEGILANYPKRMDLWNVYLDKEIKFGDVALVRALFERLLAMDFSAKKMKFLFKKYLQFEQDQGDDEHVEHVKQLAKDFVASAA 1932
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13649.2574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LPP1_9PHAE9.690e-4984.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRR9_ECTSI1.160e-4783.33rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus si... [more]
A0A7S3UYU4_HETAK5.390e-3360.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2H4N6_9STRA6.210e-3260.95Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
W7TCI2_9STRA1.680e-3160.20Rrna biogenesis protein rrp5 n=3 Tax=Monodopsidace... [more]
H3GCA3_PHYRM6.060e-2953.47Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A7S3MHV7_9STRA6.660e-2952.48Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A2R6XEU3_MARPO1.130e-2856.70Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A0W8DSU2_PHYNI2.060e-2853.47Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
W2QFF6_PHYPN2.100e-2853.47Uncharacterized protein n=13 Tax=Phytophthora TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13649contigH-elongata_contig13649:6909..8075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.5
Seed ortholog evalue3.4e-41
Seed eggNOG ortholog2880.D7FRR9
Preferred nameRRP5
KEGG koko:K14792,ko:K20353
GOsGO:0000027,GO:0000028,GO:0000447,GO:0000460,GO:0000462,GO:0000463,GO:0000464,GO:0000466,GO:0000469,GO:0000470,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009553,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034463,GO:0034470,GO:0034471,GO:0034511,GO:0034512,GO:0034513,GO:0034622,GO:0034641,GO:0034660,GO:0042134,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsCOG0539@1,KOG1070@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size411
Cds size411
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929810.1786582-CDS-H-elongata_contig13649:6908..70491622929810.1786582-CDS-H-elongata_contig13649:6908..7049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13649 6909..7049 -
1691679166.2546978-CDS-H-elongata_contig13649:6908..70491691679166.2546978-CDS-H-elongata_contig13649:6908..7049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13649 6909..7049 -
1622929810.200245-CDS-H-elongata_contig13649:7805..80751622929810.200245-CDS-H-elongata_contig13649:7805..8075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13649 7806..8075 -
1691679166.2751312-CDS-H-elongata_contig13649:7805..80751691679166.2751312-CDS-H-elongata_contig13649:7805..8075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13649 7806..8075 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13649.2574.1prot_H-elongata_contig13649.2574.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13649 6909..8075 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13649.2574.1

>prot_H-elongata_contig13649.2574.1 ID=prot_H-elongata_contig13649.2574.1|Name=mRNA_H-elongata_contig13649.2574.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
FLLFNGTKILSSPLLDNSFTHSNPPSSWSIFFSFRFAQNEFEHGSVERGR
LVFEGLMSSYPKRLDLWNVYLDKEVKAGEVRAARNIHERLIHLDLNAKRM
KGVFKKYLQFEMDHGDQAGVEAVKVKAKEYVASLAG*
back to top

mRNA from alignment at H-elongata_contig13649:6909..8075-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13649.2574.1 ID=mRNA_H-elongata_contig13649.2574.1|Name=mRNA_H-elongata_contig13649.2574.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1167bp|location=Sequence derived from alignment at H-elongata_contig13649:6909..8075- (Himanthalia elongata Himel1 dioecious)
TTCCTTTTGTTTAATGGTACGAAAATCCTTTCATCTCCTCTTTTAGATAA
TAGTTTTACGCATAGCAACCCCCCGTCATCGTGGTCTATTTTTTTTTCTT
TCAGGTTTGCGCAGAACGAATTCGAGCATGGGTCGGTGGAACGAGGACGC
TTGGTGTTCGAGGGGCTGATGTCCTCCTACCCGAAACGGCTTGATCTTTG
GAACGTGTATCTGGACAAGGAGGTCAAGGCTGGGGAAGTCAGAGCTGCGC
GAAATATTCATGAGCGCCTGGTGAGAGCGTACTCTAGGATGTGATAATAG
GTGATAGTTTATGTACTCATATGCTCTTCGCAACTTCAAGACACTATTCA
TGGGCGGTTTCGGTGGACTAGAAACTACCACAGGTATTAGCTATTAACCC
TTTTGAAACTGGATTTTAAAGTTTTATATTGAATTTCGTGTTTAGAAAAC
AGATCAAGGTTCCATAGGGGTTAATAGCTAAAAAATACAAAAAATTGTCA
ACAGGTTAGTGGCCGTAATTTTCGGGGTTTTTCGTCAAACTCTTGCGCAT
GTTCCAAACCCCGAGGCAACTGTTAATATTAATAGTGTAGTGTGGTGTGG
TGTATCCATTATAACAATGGAATCACGGTTACGCTTTTTTTCTGTTGAAT
TAAGGGAGAAGGGAAGGAGAAAAATAAAGCAGGGCTGGCTTTCAAGTTTT
ATTATACATTTAGTATGTAAAAAACCGGTAGGGGTTAATAGATCTATTTG
TGTAACGTTTCCTTTTGGGCATGGATTTCAAGTTTTATATTGAATTTAGT
GTGTAAAAAACAGATCAAGGTTCCATAGGAATTAATTTACTTGTGCACAT
CAAGTCGATGAAGGAAACGAATATCCGCCGGTGTCTTCCTTTTTTTTTCA
ACTCTTTTCCATATTATTTGCAGACAAAACTAAATGGTTGAAATCGATTC
GTTTAACCTACACTATGTGCTAAGTGCTTGGAGTTTTTTTTCTGGTTTTA
TCGAACTTACTCTTATGGTTTATCAGATCCATCTGGACCTTAACGCAAAG
CGCATGAAGGGCGTGTTCAAGAAATACCTGCAGTTTGAGATGGATCACGG
TGACCAAGCCGGAGTCGAAGCCGTTAAGGTCAAAGCAAAGGAGTATGTTG
CGTCCCTTGCAGGATGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig13649:6909..8075-

>mRNA_H-elongata_contig13649.2574.1 ID=mRNA_H-elongata_contig13649.2574.1|Name=mRNA_H-elongata_contig13649.2574.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig13649:6909..8075- (Himanthalia elongata Himel1 dioecious)
TTCCTTTTGTTTAATGGTACGAAAATCCTTTCATCTCCTCTTTTAGATAA
TAGTTTTACGCATAGCAACCCCCCGTCATCGTGGTCTATTTTTTTTTCTT
TCAGGTTTGCGCAGAACGAATTCGAGCATGGGTCGGTGGAACGAGGACGC
TTGGTGTTCGAGGGGCTGATGTCCTCCTACCCGAAACGGCTTGATCTTTG
GAACGTGTATCTGGACAAGGAGGTCAAGGCTGGGGAAGTCAGAGCTGCGC
GAAATATTCATGAGCGCCTGTTCCTTTTGTTTAATGGTACGAAAATCCTT
TCATCTCCTCTTTTAGATAATAGTTTTACGCATAGCAACCCCCCGTCATC
GTGGTCTATTTTTTTTTCTTTCAGGTTTGCGCAGAACGAATTCGAGCATG
GGTCGGTGGAACGAGGACGCTTGGTGTTCGAGGGGCTGATGTCCTCCTAC
CCGAAACGGCTTGATCTTTGGAACGTGTATCTGGACAAGGAGGTCAAGGC
TGGGGAAGTCAGAGCTGCGCGAAATATTCATGAGCGCCTGATCCATCTGG
ACCTTAACGCAAAGCGCATGAAGGGCGTGTTCAAGAAATACCTGCAGTTT
GAGATGGATCACGGTGACCAAGCCGGAGTCGAAGCCGTTAAGGTCAAAGC
AAAGGAGTATGTTGCGTCCCTTGCAGGATGAATCCATCTGGACCTTAACG
CAAAGCGCATGAAGGGCGTGTTCAAGAAATACCTGCAGTTTGAGATGGAT
CACGGTGACCAAGCCGGAGTCGAAGCCGTTAAGGTCAAAGCAAAGGAGTA
TGTTGCGTCCCTTGCAGGATGA
back to top