mRNA_H-elongata_contig13649.2573.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13649.2573.1
Unique NamemRNA_H-elongata_contig13649.2573.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13649.2573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13649contigH-elongata_contig13649:4779..5687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size583
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13649.2573.1prot_H-elongata_contig13649.2573.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13649 5058..5686 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929810.0784202-UTR-H-elongata_contig13649:4778..50571622929810.0784202-UTR-H-elongata_contig13649:4778..5057Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13649 4779..5057 -
1691679166.2015865-UTR-H-elongata_contig13649:4778..50571691679166.2015865-UTR-H-elongata_contig13649:4778..5057Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13649 4779..5057 -
1622929810.1354375-UTR-H-elongata_contig13649:5686..56871622929810.1354375-UTR-H-elongata_contig13649:5686..5687Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13649 5687..5687 -
1691679166.242785-UTR-H-elongata_contig13649:5686..56871691679166.242785-UTR-H-elongata_contig13649:5686..5687Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13649 5687..5687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929810.0995514-CDS-H-elongata_contig13649:5057..51861622929810.0995514-CDS-H-elongata_contig13649:5057..5186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13649 5058..5186 -
1691679166.2174616-CDS-H-elongata_contig13649:5057..51861691679166.2174616-CDS-H-elongata_contig13649:5057..5186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13649 5058..5186 -
1622929810.1190155-CDS-H-elongata_contig13649:5512..56861622929810.1190155-CDS-H-elongata_contig13649:5512..5686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13649 5513..5686 -
1691679166.229216-CDS-H-elongata_contig13649:5512..56861691679166.229216-CDS-H-elongata_contig13649:5512..5686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13649 5513..5686 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13649.2573.1

>prot_H-elongata_contig13649.2573.1 ID=prot_H-elongata_contig13649.2573.1|Name=mRNA_H-elongata_contig13649.2573.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MIWAVAYMSCRLVMRILCWEESRAAAHYTKAATITELGFRQAPKSVWHLK
KNLSPSKKSVQPHVPLGSHDKLGWMLDGLAGGEDEESAAYEKLFFYVVSK
*
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mRNA from alignment at H-elongata_contig13649:4779..5687-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13649.2573.1 ID=mRNA_H-elongata_contig13649.2573.1|Name=mRNA_H-elongata_contig13649.2573.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=909bp|location=Sequence derived from alignment at H-elongata_contig13649:4779..5687- (Himanthalia elongata Himel1 dioecious)
AATGATTTGGGCGGTTGCGTACATGAGTTGTAGACTCGTGATGCGGATCC
TTTGCTGGGAAGAGTCTAGAGCTGCTGCGCACTACACAAAAGCGGCGACC
ATCACGGAGCTCGGATTCAGGCAGGCACCGAAGAGTGTGTGGCATCTCAA
GAAGAATTTATCTCCTTCCAAAAAGGTAAAGCCAGATGCGGCAGTAACAT
GAGACGTTACCACCGTTGTTTTTTTATTATTTTTTTGTATGAAGTCGAGG
ACTGGGGTGTTTTTCCTAAAACACGAGCGCGGATTGTTCGTTTGGAAATT
ACATTATGTGTGGCCCCGAAACGCCTCATGTGATTGGCTTCATGATGCAA
TAGGATGTAGCATATAGAATATAGTATATACTAAGAATATTCATGTTAAA
AGTGCAGTTGGACTATGCCATCTCTTTTTTCGAATGTAAAATTGTATTCT
GCTATTACACCGACCCCTTTCCTCGCGTGAATATTTAACTGCCTCTCCCA
GAGCGTCCAGCCACATGTGCCGCTTGGTTCCCACGACAAACTGGGGTGGA
TGTTGGACGGACTCGCGGGGGGGGAAGATGAGGAATCAGCGGCTTACGAA
AAGCTTTTTTTTTATGTAGTGAGTAAATAGGGTGGCCTTTTCTATCGTGG
CAACCTCTAGTGTTGGAGTGCTGACATGACGCAGTAGCAACAACAGCAGC
AGGGGTAGGAGTAAAACGGCCACAACGAACACAGCCATACAAGAGCAGTA
CAAACCCATACAGGGGTATATAAAGTAATACACTAGGTAAACCTTACTAC
AACACTCGCAGTAATTGCGGTGCAATTTCGTCTGCTTCTGCTGGAAGGGG
GTTGCGGGGTTCTCGTAAAACGCCATGTAATATAATATAACTCCCTGGGT
TCACACGGT
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Coding sequence (CDS) from alignment at H-elongata_contig13649:4779..5687-

>mRNA_H-elongata_contig13649.2573.1 ID=mRNA_H-elongata_contig13649.2573.1|Name=mRNA_H-elongata_contig13649.2573.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig13649:4779..5687- (Himanthalia elongata Himel1 dioecious)
ATGATTTGGGCGGTTGCGTACATGAGTTGTAGACTCGTGATGCGGATCCT
TTGCTGGGAAGAGTCTAGAGCTGCTGCGCACTACACAAAAGCGGCGACCA
TCACGGAGCTCGGATTCAGGCAGGCACCGAAGAGTGTGTGGCATCTCAAG
AAGAATTTATCTCCTTCCAAAAAGATGATTTGGGCGGTTGCGTACATGAG
TTGTAGACTCGTGATGCGGATCCTTTGCTGGGAAGAGTCTAGAGCTGCTG
CGCACTACACAAAAGCGGCGACCATCACGGAGCTCGGATTCAGGCAGGCA
CCGAAGAGTGTGTGGCATCTCAAGAAGAATTTATCTCCTTCCAAAAAGAG
CGTCCAGCCACATGTGCCGCTTGGTTCCCACGACAAACTGGGGTGGATGT
TGGACGGACTCGCGGGGGGGGAAGATGAGGAATCAGCGGCTTACGAAAAG
CTTTTTTTTTATGTAGTGAGTAAATAGAGCGTCCAGCCACATGTGCCGCT
TGGTTCCCACGACAAACTGGGGTGGATGTTGGACGGACTCGCGGGGGGGG
AAGATGAGGAATCAGCGGCTTACGAAAAGCTTTTTTTTTATGTAGTGAGT
AAATAG
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