mRNA_H-elongata_contig136483.2572.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig136483.2572.1 vs. uniprot
Match: A0A0G4GWP6_VITBC (Methyltransf_12 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GWP6_VITBC) HSP 1 Score: 84.7 bits (208), Expect = 4.900e-17 Identity = 43/101 (42.57%), Postives = 64/101 (63.37%), Query Frame = 1
Query: 1 NPCLLRW-KLQAAVVKNLTWEDTFAIFGRSDIARLRSHYQNVLRDELSAGSQNFWDKRLRKDFNFMYSGTSGLAAWGLVHVVLPVLGLGFIRRLVMRGVSK 300
NPC + +L+ + L +E+ FAIF SD A LR+ Y + LR ++S+ Q FWD + + NF+YSG+SG AAW L V+ P+ GL +IR+ V RG ++
Sbjct: 103 NPCQIALAELKMVAAQCLPYEEFFAIFALSDTALLRARYFSQLRPKMSSLGQRFWDSYVYRLKNFLYSGSSGFAAWVLFRVIFPLFGLSWIRKAVERGATR 203
BLAST of mRNA_H-elongata_contig136483.2572.1 vs. uniprot
Match: A0A7S2BHG4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BHG4_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.110e-10 Identity = 34/93 (36.56%), Postives = 56/93 (60.22%), Query Frame = 1
Query: 22 KLQAAVVKNLTWEDTFAIFGRSDIARLRSHYQNVLRDELSAGSQNFWDKRLRKDFNFMYSGTSGLAAWGLVHVVLPVLGLGFIRRLVMRGVSK 300
+L+ A ++L +++ + IF +DIA L + Y LR + S FWD K +F YSGTSG AA+ L ++P+ GLGF+R+ +++ S+
Sbjct: 137 ELKVAACRSLPYDEFWKIFAENDIALLNARYA-TLRPLMRNTSTKFWDDYKNKIKSFQYSGTSGWAAYYLFRWIIPICGLGFLRKCIIKEASQ 228
BLAST of mRNA_H-elongata_contig136483.2572.1 vs. uniprot
Match: K8EIU3_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EIU3_9CHLO) HSP 1 Score: 58.5 bits (140), Expect = 7.860e-8 Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 22 KLQAAVVKNLTWEDTFAIFGRSDIARLRSHYQNVLRDELSAGSQNFWDKR--LRKDFNFMYSGTSGLAA 222
+L+ A +K LTWE FAI+GRSD + Y++ LR L A + FWD L +D NFMY+GTSGL A
Sbjct: 367 ELKLACIKALTWEQFFAIWGRSDYKVFIAVYKSKLRKLLQAETAEFWDANTHLFRD-NFMYAGTSGLMA 434
BLAST of mRNA_H-elongata_contig136483.2572.1 vs. uniprot
Match: C1N6P3_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1N6P3_MICPC) HSP 1 Score: 55.1 bits (131), Expect = 1.300e-6 Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1
Query: 22 KLQAAVVKNLTWEDTFAIFGRSDIARLRSHYQNVLRDELSAGSQNFWDKR--LRKDFNFMYSGTSGLAA 222
+L+ A ++ LTW+ FAI+GRSD + Y LR L + FWD+ L +D NFMY+GTSGL A
Sbjct: 376 ELKLAGIRALTWDQFFAIWGRSDFEVFKKVYAKKLRPLLEPETAEFWDQNHNLFRD-NFMYAGTSGLMA 443
BLAST of mRNA_H-elongata_contig136483.2572.1 vs. uniprot
Match: A0A7S2S0N5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0N5_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 2.200e-6 Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = 1
Query: 25 LQAAVVKNLTWEDTFAIFGRSDIARLRSHYQNVLRDELSAGSQNFWD--KRLRKDFNFMYSGTSGLAAWGLVHVVLPVL 255
L+ ++NL +E+ F I+ SD ++Y++VLR L Q+FWD K L ++ NFM++GTSGLAA +++P L
Sbjct: 192 LKLECIRNLEYEEYFKIWAESDFEVFEANYESVLRPGLDPEYQSFWDENKHLIRE-NFMFAGTSGLAA----KLLIPAL 265
BLAST of mRNA_H-elongata_contig136483.2572.1 vs. uniprot
Match: A0A2S7XRV7_9GAMM (DUF3419 domain-containing protein n=2 Tax=Chromatium TaxID=1047 RepID=A0A2S7XRV7_9GAMM) HSP 1 Score: 53.5 bits (127), Expect = 4.190e-6 Identity = 31/81 (38.27%), Postives = 45/81 (55.56%), Query Frame = 1
Query: 22 KLQAAVVKNLTWEDTFAIFGRSDIARLRSHYQNVLRDELSAGSQNFWDKRL----RKDFNFMYSGTSGLAAWGLVHVVLPV 252
+L+ A +K L ++D FA+FGR ++ R Y + LRDELS +Q FWD L ++ F + G SG+ A H L V
Sbjct: 83 ELKLAGIKQLAFDDFFAVFGRGVHSQFRELYYDALRDELSPFAQQFWDTHLHWFSQQHGGFYFRGLSGVVARAF-HTYLKV 162
BLAST of mRNA_H-elongata_contig136483.2572.1 vs. uniprot
Match: A0A2E0B238_9BACT (S-adenosylmethionine--diacylglycerol 3-amino-3-carboxypropyl transferase n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A2E0B238_9BACT) HSP 1 Score: 51.2 bits (121), Expect = 2.730e-5 Identity = 26/70 (37.14%), Postives = 41/70 (58.57%), Query Frame = 1
Query: 25 LQAAVVKNLTWEDTFAIFGRSDIARLRSHYQNVLRDELSAGSQNFWDKRLR----KDFNFMYSGTSGLAA 222
++ A ++NL +ED FA+FGR + ++ Y + LR +LS SQ +WD+ +R F + GTSG A
Sbjct: 92 MKQAAIRNLEFEDFFAMFGRGRLPGAKAIYGDKLRGDLSPASQRYWDRNIRFFDSPRRTFYFRGTSGTFA 161
BLAST of mRNA_H-elongata_contig136483.2572.1 vs. uniprot
Match: A0A7S2B6M2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B6M2_9STRA) HSP 1 Score: 50.8 bits (120), Expect = 4.010e-5 Identity = 27/69 (39.13%), Postives = 46/69 (66.67%), Query Frame = 1
Query: 22 KLQAAVVKNLTWEDTFAIFGRSDIARLRSHYQNVLRDELSAGSQNFWDKR--LRKDFNFMYSGTSGLAA 222
+L+ A +K+L +E F I+ +S+ + Y+++LR L+ ++FWD+ L +D NFM++GTSGLAA
Sbjct: 410 ELKLACIKHLDFERFFQIWAQSNFTVFQESYKSILRPTLTDNCRDFWDENEALIRD-NFMFAGTSGLAA 477
BLAST of mRNA_H-elongata_contig136483.2572.1 vs. uniprot
Match: UPI001A91BEF5 (DUF3419 family protein n=1 Tax=Chromatium okenii TaxID=61644 RepID=UPI001A91BEF5) HSP 1 Score: 50.1 bits (118), Expect = 6.920e-5 Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 1
Query: 22 KLQAAVVKNLTWEDTFAIFGRSDIARLRSHYQNVLRDELSAGSQNFWDKRLRKDFNFMYSGTSGLAAWGLVHVV 243
+L+ + +K L ++D FA+FGR + R Y + LRDELS +Q FWD L ++ ++ GL GL VV
Sbjct: 77 ELKLSGIKQLAFDDFFALFGRGVHPQFRELYYDALRDELSPFAQQFWDSHL----HWFHAQHGGLYFQGLAGVV 146 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136483.2572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig136483.2572.1 >prot_H-elongata_contig136483.2572.1 ID=prot_H-elongata_contig136483.2572.1|Name=mRNA_H-elongata_contig136483.2572.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp NPCLLRWKLQAAVVKNLTWEDTFAIFGRSDIARLRSHYQNVLRDELSAGSback to top mRNA from alignment at H-elongata_contig136483:823..1122- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig136483.2572.1 ID=mRNA_H-elongata_contig136483.2572.1|Name=mRNA_H-elongata_contig136483.2572.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig136483:823..1122- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig136483:823..1122- >mRNA_H-elongata_contig136483.2572.1 ID=mRNA_H-elongata_contig136483.2572.1|Name=mRNA_H-elongata_contig136483.2572.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig136483:823..1122- (Himanthalia elongata Himel1 dioecious)back to top |