mRNA_H-elongata_contig136483.2572.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136483.2572.1
Unique NamemRNA_H-elongata_contig136483.2572.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig136483.2572.1 vs. uniprot
Match: A0A0G4GWP6_VITBC (Methyltransf_12 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GWP6_VITBC)

HSP 1 Score: 84.7 bits (208), Expect = 4.900e-17
Identity = 43/101 (42.57%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 NPCLLRW-KLQAAVVKNLTWEDTFAIFGRSDIARLRSHYQNVLRDELSAGSQNFWDKRLRKDFNFMYSGTSGLAAWGLVHVVLPVLGLGFIRRLVMRGVSK 300
            NPC +   +L+    + L +E+ FAIF  SD A LR+ Y + LR ++S+  Q FWD  + +  NF+YSG+SG AAW L  V+ P+ GL +IR+ V RG ++
Sbjct:  103 NPCQIALAELKMVAAQCLPYEEFFAIFALSDTALLRARYFSQLRPKMSSLGQRFWDSYVYRLKNFLYSGSSGFAAWVLFRVIFPLFGLSWIRKAVERGATR 203          
BLAST of mRNA_H-elongata_contig136483.2572.1 vs. uniprot
Match: A0A7S2BHG4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BHG4_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.110e-10
Identity = 34/93 (36.56%), Postives = 56/93 (60.22%), Query Frame = 1
Query:   22 KLQAAVVKNLTWEDTFAIFGRSDIARLRSHYQNVLRDELSAGSQNFWDKRLRKDFNFMYSGTSGLAAWGLVHVVLPVLGLGFIRRLVMRGVSK 300
            +L+ A  ++L +++ + IF  +DIA L + Y   LR  +   S  FWD    K  +F YSGTSG AA+ L   ++P+ GLGF+R+ +++  S+
Sbjct:  137 ELKVAACRSLPYDEFWKIFAENDIALLNARYA-TLRPLMRNTSTKFWDDYKNKIKSFQYSGTSGWAAYYLFRWIIPICGLGFLRKCIIKEASQ 228          
BLAST of mRNA_H-elongata_contig136483.2572.1 vs. uniprot
Match: K8EIU3_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EIU3_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 7.860e-8
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   22 KLQAAVVKNLTWEDTFAIFGRSDIARLRSHYQNVLRDELSAGSQNFWDKR--LRKDFNFMYSGTSGLAA 222
            +L+ A +K LTWE  FAI+GRSD     + Y++ LR  L A +  FWD    L +D NFMY+GTSGL A
Sbjct:  367 ELKLACIKALTWEQFFAIWGRSDYKVFIAVYKSKLRKLLQAETAEFWDANTHLFRD-NFMYAGTSGLMA 434          
BLAST of mRNA_H-elongata_contig136483.2572.1 vs. uniprot
Match: C1N6P3_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1N6P3_MICPC)

HSP 1 Score: 55.1 bits (131), Expect = 1.300e-6
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1
Query:   22 KLQAAVVKNLTWEDTFAIFGRSDIARLRSHYQNVLRDELSAGSQNFWDKR--LRKDFNFMYSGTSGLAA 222
            +L+ A ++ LTW+  FAI+GRSD    +  Y   LR  L   +  FWD+   L +D NFMY+GTSGL A
Sbjct:  376 ELKLAGIRALTWDQFFAIWGRSDFEVFKKVYAKKLRPLLEPETAEFWDQNHNLFRD-NFMYAGTSGLMA 443          
BLAST of mRNA_H-elongata_contig136483.2572.1 vs. uniprot
Match: A0A7S2S0N5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0N5_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.200e-6
Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = 1
Query:   25 LQAAVVKNLTWEDTFAIFGRSDIARLRSHYQNVLRDELSAGSQNFWD--KRLRKDFNFMYSGTSGLAAWGLVHVVLPVL 255
            L+   ++NL +E+ F I+  SD     ++Y++VLR  L    Q+FWD  K L ++ NFM++GTSGLAA     +++P L
Sbjct:  192 LKLECIRNLEYEEYFKIWAESDFEVFEANYESVLRPGLDPEYQSFWDENKHLIRE-NFMFAGTSGLAA----KLLIPAL 265          
BLAST of mRNA_H-elongata_contig136483.2572.1 vs. uniprot
Match: A0A2S7XRV7_9GAMM (DUF3419 domain-containing protein n=2 Tax=Chromatium TaxID=1047 RepID=A0A2S7XRV7_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 4.190e-6
Identity = 31/81 (38.27%), Postives = 45/81 (55.56%), Query Frame = 1
Query:   22 KLQAAVVKNLTWEDTFAIFGRSDIARLRSHYQNVLRDELSAGSQNFWDKRL----RKDFNFMYSGTSGLAAWGLVHVVLPV 252
            +L+ A +K L ++D FA+FGR   ++ R  Y + LRDELS  +Q FWD  L    ++   F + G SG+ A    H  L V
Sbjct:   83 ELKLAGIKQLAFDDFFAVFGRGVHSQFRELYYDALRDELSPFAQQFWDTHLHWFSQQHGGFYFRGLSGVVARAF-HTYLKV 162          
BLAST of mRNA_H-elongata_contig136483.2572.1 vs. uniprot
Match: A0A2E0B238_9BACT (S-adenosylmethionine--diacylglycerol 3-amino-3-carboxypropyl transferase n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A2E0B238_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 2.730e-5
Identity = 26/70 (37.14%), Postives = 41/70 (58.57%), Query Frame = 1
Query:   25 LQAAVVKNLTWEDTFAIFGRSDIARLRSHYQNVLRDELSAGSQNFWDKRLR----KDFNFMYSGTSGLAA 222
            ++ A ++NL +ED FA+FGR  +   ++ Y + LR +LS  SQ +WD+ +R        F + GTSG  A
Sbjct:   92 MKQAAIRNLEFEDFFAMFGRGRLPGAKAIYGDKLRGDLSPASQRYWDRNIRFFDSPRRTFYFRGTSGTFA 161          
BLAST of mRNA_H-elongata_contig136483.2572.1 vs. uniprot
Match: A0A7S2B6M2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B6M2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.010e-5
Identity = 27/69 (39.13%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   22 KLQAAVVKNLTWEDTFAIFGRSDIARLRSHYQNVLRDELSAGSQNFWDKR--LRKDFNFMYSGTSGLAA 222
            +L+ A +K+L +E  F I+ +S+    +  Y+++LR  L+   ++FWD+   L +D NFM++GTSGLAA
Sbjct:  410 ELKLACIKHLDFERFFQIWAQSNFTVFQESYKSILRPTLTDNCRDFWDENEALIRD-NFMFAGTSGLAA 477          
BLAST of mRNA_H-elongata_contig136483.2572.1 vs. uniprot
Match: UPI001A91BEF5 (DUF3419 family protein n=1 Tax=Chromatium okenii TaxID=61644 RepID=UPI001A91BEF5)

HSP 1 Score: 50.1 bits (118), Expect = 6.920e-5
Identity = 28/74 (37.84%), Postives = 42/74 (56.76%), Query Frame = 1
Query:   22 KLQAAVVKNLTWEDTFAIFGRSDIARLRSHYQNVLRDELSAGSQNFWDKRLRKDFNFMYSGTSGLAAWGLVHVV 243
            +L+ + +K L ++D FA+FGR    + R  Y + LRDELS  +Q FWD  L    ++ ++   GL   GL  VV
Sbjct:   77 ELKLSGIKQLAFDDFFALFGRGVHPQFRELYYDALRDELSPFAQQFWDSHL----HWFHAQHGGLYFQGLAGVV 146          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136483.2572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A0G4GWP6_VITBC4.900e-1742.57Methyltransf_12 domain-containing protein n=1 Tax=... [more]
A0A7S2BHG4_9STRA1.110e-1036.56Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
K8EIU3_9CHLO7.860e-849.28Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]
C1N6P3_MICPC1.300e-644.93Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
A0A7S2S0N5_9STRA2.200e-639.24Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A2S7XRV7_9GAMM4.190e-638.27DUF3419 domain-containing protein n=2 Tax=Chromati... [more]
A0A2E0B238_9BACT2.730e-537.14S-adenosylmethionine--diacylglycerol 3-amino-3-car... [more]
A0A7S2B6M2_9STRA4.010e-539.13Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI001A91BEF56.920e-537.84DUF3419 family protein n=1 Tax=Chromatium okenii T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136483contigH-elongata_contig136483:823..1122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue5.5e-12
Seed eggNOG ortholog55529.EKX35615
EggNOG free text desc.Protein of unknown function (DUF3419)
EggNOG OGs2QQCH@2759,COG5379@1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929810.0304432-CDS-H-elongata_contig136483:822..11221622929810.0304432-CDS-H-elongata_contig136483:822..1122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136483 823..1122 -
1691679166.1835508-CDS-H-elongata_contig136483:822..11221691679166.1835508-CDS-H-elongata_contig136483:822..1122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136483 823..1122 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136483.2572.1prot_H-elongata_contig136483.2572.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136483 823..1122 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136483.2572.1

>prot_H-elongata_contig136483.2572.1 ID=prot_H-elongata_contig136483.2572.1|Name=mRNA_H-elongata_contig136483.2572.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
NPCLLRWKLQAAVVKNLTWEDTFAIFGRSDIARLRSHYQNVLRDELSAGS
QNFWDKRLRKDFNFMYSGTSGLAAWGLVHVVLPVLGLGFIRRLVMRGVSK
back to top

mRNA from alignment at H-elongata_contig136483:823..1122-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136483.2572.1 ID=mRNA_H-elongata_contig136483.2572.1|Name=mRNA_H-elongata_contig136483.2572.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig136483:823..1122- (Himanthalia elongata Himel1 dioecious)
AATCCCTGCCTGCTGCGCTGGAAATTGCAGGCCGCCGTGGTGAAGAATCT GACGTGGGAAGACACGTTCGCAATCTTCGGACGCAGCGACATCGCGCGGC TGAGGTCGCACTACCAAAACGTTCTCCGCGATGAGCTCAGCGCGGGGTCG CAGAATTTCTGGGACAAGCGATTACGCAAGGACTTCAACTTCATGTACTC GGGGACTAGCGGCCTGGCGGCTTGGGGGCTCGTGCACGTGGTTCTTCCGG TTCTCGGCTTGGGATTTATTCGACGGCTCGTCATGCGGGGGGTTTCCAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig136483:823..1122-

>mRNA_H-elongata_contig136483.2572.1 ID=mRNA_H-elongata_contig136483.2572.1|Name=mRNA_H-elongata_contig136483.2572.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig136483:823..1122- (Himanthalia elongata Himel1 dioecious)
AATCCCTGCCTGCTGCGCTGGAAATTGCAGGCCGCCGTGGTGAAGAATCT
GACGTGGGAAGACACGTTCGCAATCTTCGGACGCAGCGACATCGCGCGGC
TGAGGTCGCACTACCAAAACGTTCTCCGCGATGAGCTCAGCGCGGGGTCG
CAGAATTTCTGGGACAAGCGATTACGCAAGGACTTCAACTTCATGTACTC
GGGGACTAGCGGCCTGGCGGCTTGGGGGCTCGTGCACGTGGTTCTTCCGG
TTCTCGGCTTGGGATTTATTCGACGGCTCGTCATGCGGGGGGTTTCCAAG
AATCCCTGCCTGCTGCGCTGGAAATTGCAGGCCGCCGTGGTGAAGAATCT
GACGTGGGAAGACACGTTCGCAATCTTCGGACGCAGCGACATCGCGCGGC
TGAGGTCGCACTACCAAAACGTTCTCCGCGATGAGCTCAGCGCGGGGTCG
CAGAATTTCTGGGACAAGCGATTACGCAAGGACTTCAACTTCATGTACTC
GGGGACTAGCGGCCTGGCGGCTTGGGGGCTCGTGCACGTGGTTCTTCCGG
TTCTCGGCTTGGGATTTATTCGACGGCTCGTCATGCGGGGGGTTTCCAAG
back to top