mRNA_H-elongata_contig136459.2570.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136459.2570.1
Unique NamemRNA_H-elongata_contig136459.2570.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig136459.2570.1 vs. uniprot
Match: D7FS88_ECTSI (Ferric reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS88_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 2.810e-33
Identity = 65/101 (64.36%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 VRRNRYELFYYSHHFFIVVWAMMLWHAASAWYYVTGSIALWILDRAIRVSKGLTAVSVSELTALGGVTKLSYKVESGGVGPLGGPQRAMLHEAGQYAFINV 303
            VRR  +E+FYYS           LWHAASAWYY+  SIALW++DRAIR SKGLT VSV    A GGVT+L+Y VES GVGP  G  RAMLHEAGQY FINV
Sbjct:   83 VRRKHFEVFYYSXXXXXXXXXXXLWHAASAWYYIAASIALWLVDRAIRFSKGLTIVSVKGFAAAGGVTRLAYTVESAGVGPWAGSPRAMLHEAGQYVFINV 183
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BLAST of mRNA_H-elongata_contig136459.2570.1 vs. uniprot
Match: A0A6H5KA77_9PHAE (FAD-binding FR-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA77_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 7.290e-32
Identity = 65/101 (64.36%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 VRRNRYELFYYSHHFFIVVWAMMLWHAASAWYYVTGSIALWILDRAIRVSKGLTAVSVSELTALGGVTKLSYKVESGGVGPLGGPQRAMLHEAGQYAFINV 303
            VRR  +E+FYYS           LWHAASAWYY+  SIALW++DRAIR SKGLT VSV    A GGVT+L+Y VES GVGP   P RAMLHEAGQY FINV
Sbjct:  567 VRRKHFEVFYYSXXXXXXXXXXXLWHAASAWYYIAASIALWLVDRAIRFSKGLTIVSVKGFAAAGGVTRLAYTVESAGVGPWARPPRAMLHEAGQYVFINV 667
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BLAST of mRNA_H-elongata_contig136459.2570.1 vs. uniprot
Match: A0A7S2UV64_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV64_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.260e-27
Identity = 53/102 (51.96%), Postives = 72/102 (70.59%), Query Frame = 1 
Query:    1 VRRNRYELFYYSHHFFIVVWAMMLWHAASAWYYVTGSIALWILDRAIRVSKGLTAVSVSELTAL-GGVTKLSYKVESGGVGPLGGPQRAMLHEAGQYAFINV 303
            VRR  YE+FYY+HH  +V + +MLWHA  AWYYV G +ALW++DR +R+ + L+ V+V +   L GG+ KLSY  ESGG GPL G +  M H AGQ+ ++NV
Sbjct:   83 VRRRMYEVFYYAHHMALVFFVVMLWHANMAWYYVIGGLALWVVDRGVRMFRNLSNVNVLDAECLDGGIVKLSYLAESGGAGPLKGEETPMQHRAGQFIYLNV 184
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BLAST of mRNA_H-elongata_contig136459.2570.1 vs. uniprot
Match: A0A7S3XXM9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXM9_HETAK)

HSP 1 Score: 105 bits (261), Expect = 3.570e-24
Identity = 51/102 (50.00%), Postives = 72/102 (70.59%), Query Frame = 1 
Query:    1 VRRNRYELFYYSHHFFIVVWAMMLWHAASAWYYVTGSIALWILDRAIRVSKGLTAVSVSELTALGG-VTKLSYKVESGGVGPLGGPQRAMLHEAGQYAFINV 303
            VRR ++E+FYYSHHF +V + MMLWHA S+WYY+ G ++L++LDRA+R ++GL+ VSV  +   G  +T++ Y V  GG GP G   R + H  GQY F+NV
Sbjct:  467 VRRTKFEIFYYSHHFALVFFVMMLWHALSSWYYILGGLSLYLLDRALRFTRGLSRVSVEGVAVYGADITEIKYTVSGGGRGPWGKDGR-VAHTMGQYMFVNV 567
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BLAST of mRNA_H-elongata_contig136459.2570.1 vs. uniprot
Match: A0A7S3XXU3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXU3_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 9.640e-22
Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 VRRNRYELFYYSHHFFIVVWAMMLWHAASAWYYVTGSIALWILDRAIRVSKGLTAVSVSELTALGG-VTKLSYKVESGGVGPLGGPQRAMLHEAGQYAFINV 303
            VRR ++E FYY+HHF +V +  MLWHA S+WYY+ G ++L++LDRA+R ++GL+ V V  +   G  VT++ Y V  GG GP G   R   H  GQY F+NV
Sbjct:  472 VRRTKFEWFYYAHHFALVFFVAMLWHAVSSWYYILGGLSLYLLDRALRFTRGLSRVRVEAVAVYGDDVTEIKYTVSGGGRGPWGKNGRVS-HTMGQYMFVNV 572
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BLAST of mRNA_H-elongata_contig136459.2570.1 vs. uniprot
Match: A0A7S3Y9B3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9B3_HETAK)

HSP 1 Score: 84.3 bits (207), Expect = 6.940e-17
Identity = 52/107 (48.60%), Postives = 74/107 (69.16%), Query Frame = 1 
Query:    1 VRRNRYELFYYSHHFFIVVWAMMLWHAASAWYYVTGSIALWILDRAIRVSKGL-TAVSVSELTALGG-VTKLSYKVESGGV----GPLGGPQRAMLHEAGQYAFINV 303
            VRR  +E+FYY+HH  +VV+A+ML+HAASAW+Y+ G ++L  LDRA+R ++G  +A +++  TA GG VT L+Y +E+GG        G P RAM    GQY F+NV
Sbjct:  544 VRRAHFEVFYYAHHVSVVVFAVMLYHAASAWFYMLGGLSLLALDRAMRFARGCQSAQALAVGTADGGQVTVLTYALETGGSLFRGAAKGSPPRAM----GQYYFVNV 646
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BLAST of mRNA_H-elongata_contig136459.2570.1 vs. uniprot
Match: A0A8J2SNU6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SNU6_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.090e-12
Identity = 44/102 (43.14%), Postives = 54/102 (52.94%), Query Frame = 1 
Query:    1 VRRNRYELFYYSHHFFIVVWAMMLWHAASAWYYVTGSIALWILDRAIRVSKGLTAVSVSELT-ALGGVTKLSYKVESGGVGPLGGPQRAMLHEAGQYAFINV 303
            VRRN +E+FYY+HHFFI V+A+ LWHAAS WY V GS+     DR  R+S+      V  L     GV  L   +  G          A   EAGQY F+ V
Sbjct:  499 VRRNHFEVFYYTHHFFIAVYAVALWHAASCWYLVVGSLVHACADRMARLSEAGRRWRVVALEPCFDGVVHLELALRDG----------AFAFEAGQYCFLRV 590
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BLAST of mRNA_H-elongata_contig136459.2570.1 vs. uniprot
Match: A0A7S2GV52_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GV52_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 5.970e-10
Identity = 39/101 (38.61%), Postives = 51/101 (50.50%), Query Frame = 1 
Query:    1 VRRNRYELFYYSHHFFIVVWAMMLWHAASAWYYVTGSIALWILDRAIRVSKGLTAVSVSELTALGGVTKLSYKVESGGVGPLGGPQRAMLHEAGQYAFINV 303
            VRR  YELFYY HH ++VV+ + L HAAS+WYY+ G + LW  DR  R+         +E  AL   T     +E      L G         GQY ++NV
Sbjct:   18 VRRRNYELFYYLHHIYLVVFIVSLLHAASSWYYILGGLGLWAFDRCKRMWLRSRRWYATEYRALADTTT---HLELSPCDELFGHDCDFRFSCGQYLYLNV 115
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BLAST of mRNA_H-elongata_contig136459.2570.1 vs. uniprot
Match: A0A7S2WTL5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTL5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 7.120e-10
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:    1 VRRNRYELFYYSHHFFIVVWAMMLWHAASAWYYVTGSIALWILDRAIRVSKGLTAVSVSELTAL--GGVTKLSYKVESGGVGPLGGPQRAMLHEAGQYAFINV 303
            VRR  YELFYY HH F+VV+ + L HAAS+WY++   ++LW  DR IR  +      V ++ A+  G VT+L     S        P  +     GQY ++N+
Sbjct:  121 VRRRNYELFYYLHHIFLVVFIVALLHAASSWYFLIAGLSLWFFDRCIRTYRRSGHWDVVDIRAVADGSVTRLELCPASRLPSKQSSPP-SFKFCCGQYLYLNI 222
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BLAST of mRNA_H-elongata_contig136459.2570.1 vs. uniprot
Match: A0A7S1AQQ5_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AQQ5_NOCSC)

HSP 1 Score: 56.6 bits (135), Expect = 3.780e-7
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    1 VRRNRYELFYYSHHFFIVVWAMMLWHAASAWYYVTGSIALWILDRAIRVSKGLTAVSVSELTA 189
            +RRNR+ELF Y+H+ F+V+    LWH ++AWY+V  S+ +W +DR  R  +    V +  + A
Sbjct:  356 LRRNRWELFRYTHNIFLVLVPTALWHGSNAWYFVLPSVIIWSIDRMWRFLQTAEEVQIRNIVA 418
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136459.2570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FS88_ECTSI2.810e-3364.36Ferric reductase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5KA77_9PHAE7.290e-3264.36FAD-binding FR-type domain-containing protein n=1 ... [more]
A0A7S2UV64_9STRA2.260e-2751.96Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XXM9_HETAK3.570e-2450.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XXU3_HETAK9.640e-2248.04Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y9B3_HETAK6.940e-1748.60Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J2SNU6_9STRA1.090e-1243.14Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2GV52_9STRA5.970e-1038.61Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2WTL5_9STRA7.120e-1037.86Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S1AQQ5_NOCSC3.780e-739.68Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136459contigH-elongata_contig136459:939..1595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue4.7e-27
Seed eggNOG ortholog2880.D7FS88
Preferred nameFRO1
KEGG koko:K00521
GOsGO:0000293,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005886,GO:0006091,GO:0006810,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009767,GO:0009987,GO:0015688,GO:0015979,GO:0016020,GO:0016491,GO:0016722,GO:0016723,GO:0019684,GO:0022900,GO:0042592,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055114,GO:0065007,GO:0065008,GO:0071944,GO:0098771,GO:1901678
EggNOG free text desc.oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGsKOG0039@1,KOG0039@2759
EC1.16.1.7
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionFerric reductase transmembrane component-like domain
Ec32 orthologEc-05_004940.1
Exons2
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929809.9061246-CDS-H-elongata_contig136459:938..10891622929809.9061246-CDS-H-elongata_contig136459:938..1089Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136459 939..1089 -
1691679166.1446774-CDS-H-elongata_contig136459:938..10891691679166.1446774-CDS-H-elongata_contig136459:938..1089Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136459 939..1089 -
1622929809.921665-CDS-H-elongata_contig136459:1443..15951622929809.921665-CDS-H-elongata_contig136459:1443..1595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136459 1444..1595 -
1691679166.1554596-CDS-H-elongata_contig136459:1443..15951691679166.1554596-CDS-H-elongata_contig136459:1443..1595Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136459 1444..1595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136459.2570.1prot_H-elongata_contig136459.2570.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136459 939..1595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136459.2570.1

>prot_H-elongata_contig136459.2570.1 ID=prot_H-elongata_contig136459.2570.1|Name=mRNA_H-elongata_contig136459.2570.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
VRRNRYELFYYSHHFFIVVWAMMLWHAASAWYYVTGSIALWILDRAIRVS
KGLTAVSVSELTALGGVTKLSYKVESGGVGPLGGPQRAMLHEAGQYAFIN
V
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mRNA from alignment at H-elongata_contig136459:939..1595-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136459.2570.1 ID=mRNA_H-elongata_contig136459.2570.1|Name=mRNA_H-elongata_contig136459.2570.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=657bp|location=Sequence derived from alignment at H-elongata_contig136459:939..1595- (Himanthalia elongata Himel1 dioecious)
GTGCGCAGGAATCGATACGAGCTTTTCTACTACTCGCACCACTTTTTCAT
CGTGGTATGGGCGATGATGCTCTGGCACGCCGCGTCCGCCTGGTATTACG
TGACTGGATCCATCGCCCTCTGGATCCTCGACCGCGCCATCAGGGTTTCC
AAGTGAGAAGTGAAGGGATTATTCTAGAGCACGGGAAGGGGGTCGAAGGC
GTCAAAAAATTTTTTTTTTGTCCCAGTAGGCGTCGCGCGGGATATCATTA
TTATTTTTGGTTGTTGTCCATATTGGAGAGAAAACTATGCGCGCGGCTTC
GGAACCTCAGCTCAGTTCTTCCCTCCCCCATTGACGAGGTGTAAACACAC
CTCTAGCTACCCGTGTCTTGATTGGCTGCCTCTACACCCCGCCTAATAGA
CACTTGTTTATTTTTTAAAATGATTATGGTTTATGATTATTTCCTCCTTT
TGTTTTTGTTTTGTTTGGTGCTCTTGTTCTGGCCGTTACGACCCCACCGC
CGAAAGAGGGTTGACTGCGGTGTCCGTTTCGGAGCTGACAGCCTTGGGAG
GCGTTACGAAGCTGTCCTACAAAGTCGAGAGCGGCGGCGTTGGTCCCTTG
GGAGGGCCGCAGAGGGCGATGCTCCATGAAGCCGGCCAATATGCGTTCAT
CAATGTC
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Coding sequence (CDS) from alignment at H-elongata_contig136459:939..1595-

>mRNA_H-elongata_contig136459.2570.1 ID=mRNA_H-elongata_contig136459.2570.1|Name=mRNA_H-elongata_contig136459.2570.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig136459:939..1595- (Himanthalia elongata Himel1 dioecious)
GTGCGCAGGAATCGATACGAGCTTTTCTACTACTCGCACCACTTTTTCAT
CGTGGTATGGGCGATGATGCTCTGGCACGCCGCGTCCGCCTGGTATTACG
TGACTGGATCCATCGCCCTCTGGATCCTCGACCGCGCCATCAGGGTTTCC
AAGTGCGCAGGAATCGATACGAGCTTTTCTACTACTCGCACCACTTTTTC
ATCGTGGTATGGGCGATGATGCTCTGGCACGCCGCGTCCGCCTGGTATTA
CGTGACTGGATCCATCGCCCTCTGGATCCTCGACCGCGCCATCAGGGTTT
CCAAAGGGTTGACTGCGGTGTCCGTTTCGGAGCTGACAGCCTTGGGAGGC
GTTACGAAGCTGTCCTACAAAGTCGAGAGCGGCGGCGTTGGTCCCTTGGG
AGGGCCGCAGAGGGCGATGCTCCATGAAGCCGGCCAATATGCGTTCATCA
ATGTCAGGGTTGACTGCGGTGTCCGTTTCGGAGCTGACAGCCTTGGGAGG
CGTTACGAAGCTGTCCTACAAAGTCGAGAGCGGCGGCGTTGGTCCCTTGG
GAGGGCCGCAGAGGGCGATGCTCCATGAAGCCGGCCAATATGCGTTCATC
AATGTC
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