mRNA_H-elongata_contig13643.2568.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13643.2568.1
Unique NamemRNA_H-elongata_contig13643.2568.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Match: D8LBU7_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBU7_ECTSI)

HSP 1 Score: 366 bits (940), Expect = 1.350e-122
Identity = 202/259 (77.99%), Postives = 219/259 (84.56%), Query Frame = 1
Query:    1 RSELIPC-CLRRQVKRAGLTEKTLDELEVARDITVRKRITKIFNRLEEDFAGDLKAYNDYLETREDIIFGLCGGDKGEMERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYNQLEEARKLQHTRKLKLEAQEVALGERDRVTANMGDNLFV-----DAGGFDETG-EANAGGNNAGALPPGMRQMLNIPAPVPQPQSNQDTRRRFASMAVTKRRPLMQKAAAAPDRKLGAKRNWEEMLGSLF 756
            R +  PC   + QV+RAGLTEKTLDELEVARDITVRKRITKIFNR EEDF GDL+AYNDYLET ED+I+GLC GDKGE +RAQA VREYED++RGEITKNAA+KVDR+K+VEEQLAALRQQQESRKHYNQLEEARK QH RKLKLEAQEVALGERD VTA MGD LF+        G D  G E  A GN   A+P GMRQMLNIPAP+PQPQSNQDTRRRFASM+VT+RRP MQKAAAAPDR LGAKRNW EMLGSLF
Sbjct:   46 RRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTATMGDGLFLFLDSLTGEGLDGAGGEPGANGNAPAAVPAGMRQMLNIPAPLPQPQSNQDTRRRFASMSVTERRPRMQKAAAAPDRALGAKRNWVEMLGSLF 304          
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Match: A0A835Z320_9STRA (CDK-activating kinase assembly factor MAT1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z320_9STRA)

HSP 1 Score: 166 bits (421), Expect = 7.430e-45
Identity = 112/248 (45.16%), Postives = 152/248 (61.29%), Query Frame = 1
Query:   16 PCCLRRQVKRAGLTEKTLDELEVARDITVRKRITKIFNRLEEDFAGDLKAYNDYLETREDIIFGLCGGDKGEMERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYNQLEEARKLQHTRKLKLEAQEVALGERDRVTANMGDNLFV-DAGGFDETGEANAGGNNAGALPPGMRQMLNIPAPVPQPQSNQDTRRRFASMAVTKRRPLMQKAAAAPDRKLGAKRNWEEMLGSLF 756
            P C ++ VKR GLT+KTLDEL V +++T R+RI KIFN+ EEDF   L+ YN+YL   ED+I+ L  G   ++E   A++R YED +R EI +N A+ +D  ++VE+ +AA  QQ+E+RKH  Q E  R     RK+  EA EVALGER+ VT+ + D L + D GG D    A      AGAL PG R ++ I AP+PQP  +  T+R + +M    R    + A  AP R  G +RNW E  GSLF
Sbjct:   48 PKC-KKDVKRTGLTQKTLDELAVQKELTHRRRILKIFNKTEEDFETLLE-YNNYLAEVEDLIYDLTNG--VDVEACLAKIRAYEDAHREEIIQNQARDMDTQRVVEQTIAAHAQQEETRKHDKQAEAQRLRLKRRKMHAEAVEVALGEREAVTSTLMDVLVLGDGGGADGXXXAAP----AGALLPGQRMLIQINAPLPQPILHSATKRLYENMPPRARAAARRDAGGAPSRADGMRRNWFEACGSLF 287          
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Match: A0A7S1GHB7_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GHB7_CYCTE)

HSP 1 Score: 92.4 bits (228), Expect = 1.960e-17
Identity = 57/150 (38.00%), Postives = 99/150 (66.00%), Query Frame = 1
Query:   37 VKRAGLTEKTLDELEVARDITVRKRITKIFNRLEEDFAGDLKAYNDYLETREDIIFGLCGGDKGEMERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYNQLEEARKLQHT-RKLKLEAQEVALGERDRVTANM 483
            VKR  L+ +TLD+++  +D + R+R+TK+FN++E DF+  L+ YN+YLE  EDII+ +   ++   E  +A+V+ YE+ N+ +I    +++ D ++ + +++AA +++ E RK    +EE R +  T RK K EA EV LGER+ V+A +
Sbjct:   65 VKRVTLSTRTLDDVQCEKDTSWRRRVTKVFNKIESDFSTLLE-YNNYLEEVEDIIYAIVN-EEPNAEEMKAKVKAYEEANKSQIVIRQSQRADEERSIADRIAAEQREVERRKR-EVIEEERAIALTKRKYKQEAAEVLLGEREEVSAEL 211          
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Match: A0A6U3Q473_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q473_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.980e-17
Identity = 58/164 (35.37%), Postives = 104/164 (63.41%), Query Frame = 1
Query:    1 RSELIPCCL-RRQVKRAGLTEKTLDELEVARDITVRKRITKIFNRLEEDFAGDLKAYNDYLETREDIIFGLCGGDKGEMERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYNQLEEARKL--QHTRKLKLEAQEVALGERDRVTANM 483
            R ++ PC +    VKR  L+ +TLD+++  +D + R+R+ K++N++E DF   L+ YN+YLE  EDII+ +   ++   E  +A+V+ YE+ N+GEI    +++ D ++ + +++AA  +Q+E+     + EE  K   Q   KLKL++ +VALGER+ V+A +
Sbjct:   58 RRKVFPCPVCETAVKRVTLSTRTLDDVQCEKDTSWRRRVLKVYNKVETDFPSLLE-YNNYLEEVEDIIYSIVN-EEPNAEEVKAKVKAYEEANKGEIVIRQSQRADEERSMADRIAA--EQREAXXXXREFEEEEKFKKQTKAKLKLQSTQVALGEREEVSAEL 217          
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Match: A0A6U3UWA8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3UWA8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.060e-17
Identity = 58/162 (35.80%), Postives = 100/162 (61.73%), Query Frame = 1
Query:    1 RSELIPCCL-RRQVKRAGLTEKTLDELEVARDITVRKRITKIFNRLEEDFAGDLKAYNDYLETREDIIFGLCGGDKGEMERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYNQLEEARKLQHTRKLKLEAQEVALGERDRVTANM 483
            R +  PC + +  VKR  L+ +TLD+L+  +D + R+RI KI+N++E+DF   L+ YN+YLE  EDIIF +   ++   E  +A+V+ YE++N+ +I    +++ D ++ + +++A+  ++ E RK   +  E       RK K E  EV LGERD+V+A +
Sbjct:   56 RRKTFPCPICKTVVKRVTLSTRTLDDLQCEKDTSWRRRILKIYNKVEKDFPTLLE-YNNYLEEVEDIIFSIVN-EEPNAEEVKAKVKAYEEKNKSQIVIRQSQRADEERCIADRIASETREAERRKREFEEVEKAVASTKRKFKQETTEVMLGERDQVSAEV 215          
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Match: A0A7S2R033_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R033_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.450e-15
Identity = 50/159 (31.45%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    1 RSELIPCCL-RRQVKRAGLTEKTLDELEVARDITVRKRITKIFNRLEEDFAGDLKAYNDYLETREDIIFGLCGGDKGEMERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYNQLEEARKLQHTRKLKLEAQEVALGERDRVT 474
            R ++ PC +    VKR  LT +TLD+++  +D + RKR+ K++N++E DF   L+ YN+YLE  E I+F +   ++ + E  +A++++YE++N+ +I    +++ D ++ + +++AA ++  E ++    L E       +K K E+ +V LGERD+++
Sbjct:   13 RRKVFPCPICETPVKRVTLTTRTLDDVQCEKDTSWRKRVMKVYNKVESDFPSLLE-YNNYLEEVECIVFSIVN-EESDAEEQKAKLKKYEEENKSQIVIRQSQRADEERSIADRIAAEQRDAERKRRECILGERAIALSKKKYKEESTQVMLGERDQIS 169          
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Match: D0N908_PHYIT (RING-type domain-containing protein n=13 Tax=Peronosporaceae TaxID=4777 RepID=D0N908_PHYIT)

HSP 1 Score: 84.7 bits (208), Expect = 1.270e-14
Identity = 54/150 (36.00%), Postives = 88/150 (58.67%), Query Frame = 1
Query:   16 PCCLRRQVKRAGLTEKTLDELEVARDITVRKRITKIFNRLEEDFAGDLKAYNDYLETREDIIFGLCGGDKGEMERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYNQLEEARKLQHTRKLKLEAQEVALGERD 465
            P C ++ VK++ L +KT++EL  A++ +VRK++TK +N+ E+DF   L+ YNDYLET E++IF L  GD  E   AQ + ++Y  ++   I  N AKK D ++ + + +A  +            E+++      + K +  EVALGERD
Sbjct:   61 PAC-QKPVKKSQLQDKTIEELNFAKETSVRKKVTKDYNKTEDDF-DTLEEYNDYLETLENLIFDLVYGDDAEKAAAQKQWKQYRQEHAIAIATNDAKKADEERRIAQLIAEQQXXXXXXXXXXXKEDSQFEADLERQKAQLMEVALGERD 208          
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Match: A0A024G1S9_9STRA (RING-type domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024G1S9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.810e-14
Identity = 52/150 (34.67%), Postives = 86/150 (57.33%), Query Frame = 1
Query:   16 PCCLRRQVKRAGLTEKTLDELEVARDITVRKRITKIFNRLEEDFAGDLKAYNDYLETREDIIFGLCGGDKGEMERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYNQLEEARKLQHTRKLKLEAQEVALGERD 465
            P C +  VK++ L +KT++E+   +++++RK++ K +N+ E+DF   L+ YNDYLET E++IF L  GD  E  RAQ + + Y  +N   I  N AKK + ++ +   L   ++         Q E+++      + + E  EVALGERD
Sbjct:   55 PTCSK-PVKKSQLQDKTIEEINYTKEVSIRKKVLKDYNKTEDDFVT-LEEYNDYLETLENLIFDLVYGDDEEKGRAQKQWKMYRQENLAVIATNDAKKAEEERRISHLLTEQQRIXXXXXLLQQKEDSQFEADVERQRAELMEVALGERD 202          
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Match: K3WVU4_GLOUD (RING-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVU4_GLOUD)

HSP 1 Score: 82.4 bits (202), Expect = 7.860e-14
Identity = 53/152 (34.87%), Postives = 88/152 (57.89%), Query Frame = 1
Query:   13 IPC-CLRRQVKRAGLTEKTLDELEVARDITVRKRITKIFNRLEEDFAGDLKAYNDYLETREDIIFGLCGGDKGEMERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYNQLEEARKLQHTRKLKLEAQEVALGERD 465
            IPC   ++ VK++ L +KT++EL  A++ ++RK++TK +N+ E+DF+   + YNDYLE  E++IF L  GD  E   AQ + ++Y  +N   I  N AKK D ++ + + +              Q E+++     ++ K +  EVALGERD
Sbjct:   57 IPCPACQKLVKKSQLQDKTIEELNYAKETSMRKKVTKDYNKTEDDFSTT-EEYNDYLEVLENLIFDLVYGDDNEKAAAQKQWKQYRMENAIAIATNDAKKADEERRIAQLIGEQXXXXXXXXXXXQREDSQFEADLQRQKAQLMEVALGERD 207          
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Match: H3GLZ6_PHYRM (RING-type domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=H3GLZ6_PHYRM)

HSP 1 Score: 82.0 bits (201), Expect = 1.040e-13
Identity = 53/150 (35.33%), Postives = 87/150 (58.00%), Query Frame = 1
Query:   16 PCCLRRQVKRAGLTEKTLDELEVARDITVRKRITKIFNRLEEDFAGDLKAYNDYLETREDIIFGLCGGDKGEMERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYNQLEEARKLQHTRKLKLEAQEVALGERD 465
            P C  + VK++ L +KT++EL  A++ +VRK++TK +N+ E+DF   L  +ND+LET E++IF L  GD  E   AQ + ++Y  +N   I  N AKK D ++ + + +A  ++           E+++      + K +  EVALGERD
Sbjct:   61 PAC-EKPVKKSQLQDKTIEELNFAKETSVRKKVTKDYNKTEDDF-DTLDEFNDFLETLENLIFDLVYGDDVEKAAAQKQWKQYRQENAIAIATNDAKKADEERRIAQLIAEQQRXXXXXXXXXXREDSQFEADLERQKAQLMEVALGERD 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBU7_ECTSI1.350e-12277.99RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835Z320_9STRA7.430e-4545.16CDK-activating kinase assembly factor MAT1-domain-... [more]
A0A7S1GHB7_CYCTE1.960e-1738.00Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A6U3Q473_9STRA2.980e-1735.37Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6U3UWA8_9STRA4.060e-1735.80Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2R033_9STRA2.450e-1531.45Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
D0N908_PHYIT1.270e-1436.00RING-type domain-containing protein n=13 Tax=Peron... [more]
A0A024G1S9_9STRA6.810e-1434.67RING-type domain-containing protein n=2 Tax=Albugo... [more]
K3WVU4_GLOUD7.860e-1434.87RING-type domain-containing protein n=1 Tax=Globis... [more]
H3GLZ6_PHYRM1.040e-1335.33RING-type domain-containing protein n=7 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13643contigH-elongata_contig13643:2425..5153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score250.8
Seed ortholog evalue4.9e-64
Seed eggNOG ortholog2880.D8LBU7
Preferred nameTFB3
KEGG koko:K10842
KEGG Pathwayko03022,ko03420,map03022,map03420
KEGG ModuleM00290
GOsGO:0000079,GO:0000109,GO:0000112,GO:0000428,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008047,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009889,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0016070,GO:0016310,GO:0016538,GO:0016567,GO:0016591,GO:0016740,GO:0018130,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0019887,GO:0030234,GO:0030295,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032446,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0033674,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042325,GO:0042327,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043539,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0046872,GO:0046914,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051338,GO:0051347,GO:0051716,GO:0051726,GO:0055029,GO:0060255,GO:0061575,GO:0061630,GO:0061659,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070816,GO:0070985,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0098772,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1904029,GO:1904031,GO:1990234,GO:1990391,GO:2000112,GO:2001141
EggNOG free text desc.cyclin-dependent protein serine/threonine kinase activator activity
EggNOG OGsCOG5220@1,KOG3800@2759
COG Functional cat.DKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-27_002640.1
Exons6
Model size1240
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13643.2568.1prot_H-elongata_contig13643.2568.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13643 2900..4554 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929809.6510088-UTR-H-elongata_contig13643:2424..28991622929809.6510088-UTR-H-elongata_contig13643:2424..2899Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13643 2425..2899 -
1691679166.0387876-UTR-H-elongata_contig13643:2424..28991691679166.0387876-UTR-H-elongata_contig13643:2424..2899Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13643 2425..2899 -
1622929809.7496958-UTR-H-elongata_contig13643:4554..46631622929809.7496958-UTR-H-elongata_contig13643:4554..4663Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13643 4555..4663 -
1691679166.0960507-UTR-H-elongata_contig13643:4554..46631691679166.0960507-UTR-H-elongata_contig13643:4554..4663Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13643 4555..4663 -
1622929809.7653937-UTR-H-elongata_contig13643:5031..51531622929809.7653937-UTR-H-elongata_contig13643:5031..5153Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13643 5032..5153 -
1691679166.1051092-UTR-H-elongata_contig13643:5031..51531691679166.1051092-UTR-H-elongata_contig13643:5031..5153Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig13643 5032..5153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929809.6687474-CDS-H-elongata_contig13643:2899..30371622929809.6687474-CDS-H-elongata_contig13643:2899..3037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13643 2900..3037 -
1691679166.0535338-CDS-H-elongata_contig13643:2899..30371691679166.0535338-CDS-H-elongata_contig13643:2899..3037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13643 2900..3037 -
1622929809.6811125-CDS-H-elongata_contig13643:3209..33341622929809.6811125-CDS-H-elongata_contig13643:3209..3334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13643 3210..3334 -
1691679166.062107-CDS-H-elongata_contig13643:3209..33341691679166.062107-CDS-H-elongata_contig13643:3209..3334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13643 3210..3334 -
1622929809.694722-CDS-H-elongata_contig13643:3612..37511622929809.694722-CDS-H-elongata_contig13643:3612..3751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13643 3613..3751 -
1691679166.069806-CDS-H-elongata_contig13643:3612..37511691679166.069806-CDS-H-elongata_contig13643:3612..3751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13643 3613..3751 -
1622929809.7100763-CDS-H-elongata_contig13643:3904..39591622929809.7100763-CDS-H-elongata_contig13643:3904..3959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13643 3905..3959 -
1691679166.0777533-CDS-H-elongata_contig13643:3904..39591691679166.0777533-CDS-H-elongata_contig13643:3904..3959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13643 3905..3959 -
1622929809.7323961-CDS-H-elongata_contig13643:4477..45541622929809.7323961-CDS-H-elongata_contig13643:4477..4554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13643 4478..4554 -
1691679166.0869446-CDS-H-elongata_contig13643:4477..45541691679166.0869446-CDS-H-elongata_contig13643:4477..4554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13643 4478..4554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13643.2568.1

>prot_H-elongata_contig13643.2568.1 ID=prot_H-elongata_contig13643.2568.1|Name=mRNA_H-elongata_contig13643.2568.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp
MERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHY
NQLEEARKLQHTRKLKLEAQEVALGERDRVTANMGDNLFVDAGGFDETGE
ANAGGNNAGALPPGMRQMLNIPAPVPQPQSNQDTRRRFASMAVTKRRPLM
QKAAAAPDRKLGAKRNWEEMLGSLFLL*
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mRNA from alignment at H-elongata_contig13643:2425..5153-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13643.2568.1 ID=mRNA_H-elongata_contig13643.2568.1|Name=mRNA_H-elongata_contig13643.2568.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2729bp|location=Sequence derived from alignment at H-elongata_contig13643:2425..5153- (Himanthalia elongata Himel1 dioecious)
AGGTCCGAGCTGATCCCATGTTGTCTTCGTCGCCAGGTGAAGAGAGCGGG TCTCACGGAAAAGACACTGGACGAGCTGGAGGTCGCGAGGGACATCACCG TGCGCAAGAGGATAACTAAAATGTGACCGCTCTTAGGCAATTCAGTTGAT GCCCCCCACCCCCCAGAGAGAGGGAGATAAAGAGAGAAGTGTATTGAAAA TACTATTACAAGCAGACAATGTTGATCCTTGATTCTGAGGAGATCGCGAT AAAAATTAAATGCAGTTGCTTTCACTCCGGCGTCGGTAGTAATAGCTCAC TGCGCCTCCTGCTTCGTGTTTGGCAACATGCGCTCGGTGCTACGATAATC ATTTCCTTCGGCCGGATGATATCGATCGAGGCGCAGCGGATAATAATCGT ATCGGCTAACGGAAGTAGTACCTTGCGCTGCTCTTCCCCCTCCTCCCCTC CTGCCTCCGAACCACCCAAACGAATCAAAACGACAAGCAGCTTCAACCGG TTGGAGGAAGACTTTGCAGGCGATTTGAAGGCGTACAATGACTACCTTGA GACGAGAGAGGACATCATATTCGGGCTGTGCGGCGGGGATAAGGGCGAGA TGGAACGGGCCCAAGCCAGGGTGCGAGAGTACGAGGACCAAAACCGTGGC GAAATTACCAAAAACGCCGCGAAGAAGTGAGCGGACGCTTTCGGAGCTTC GACGCGGAATGCTCATTTTTTTTTATTTCTTTTATTGACTTCCCCTTTTG AATTTTTGAGGCTCCGCTTCGGGTGCAAGGGAAGTCAATTGAGGACAGCT GGCGGTGAGAGCTGTGGAATCAAGAGACTATTTGGGGATCGAATGGGATT ATGGGGAGGACTCGGCGCCGTCGTATCCTGTAGTGTAGCGGGGTGCCCAA CCGTACTACTAATACGATGCAGCCGACATTATTTCGGTCCTCCGAATCGC ATGTCGGAACACTGGCTCTGTGTTTTAGGTGCCCACACCAAACCTGTCGC CAATTTTTTCGTCTTCTGTTTCCGCCGCCTTCGATACACCGATATAAAAA CGGTGCCAAATTTGGGATTGCTGGAAGCCGGTTTTGGGGAGGAAAAAAAG GCAAAAGGAATAACGCAGTAATGGGTCGGTCGCGCACACGTCAGAGTTAT CGCGTCCCCCGGCTGAACGCTCCGCGCCGCGTTGTTACCGTCAGGGTTGA TCGGGATAAACTTGTCGAGGAACAGCTCGCCGCTTTGAGACAGCAACAGG TCAGTCCTGGCGTAGGCTGACCCGTCGTCTGGCATAATCTTAAAACGAAA AATGAACGATCCGCTCTCAGCACGGACGCCAGCATATCTCTATAAACTCT TTTCGGTTACCGCTTGTTTGTTGAAAAACCGTCCCGTGTCTCACAATCTC AGGAAAGCCGCAAACACTACAACCAGCTCGAGGAGGCGCGCAAGCTGCAG CACACGAGAAAGCTAAAGCTCGAGGCGCAGGAGGTGGCGCTTGGGGAGCG AGATCGCGTCACCGCCAATATGGGAGACAACTTGTTTGTTGGTGAGGCCG CTGACGAACCGTAGTGTGCCTCCTCTCTCTCTTTCCCTGGGCTTGTGGTT ATATTGTATATTGAGTATTGAGTATTGAGTATTGGACCGATTTGGTGACG TTGTCGACTTCATTGAATGTCGTCTACGATGATGTGAGGTGAGGTGAGCT TACGCATCCGGACCTCGTCTAAGATACATCATCCTCAGCATGAATGCCGT GTATCACCTAGCAACGTGGTCAACCTACTAAAAAACAACTTCCATCGCAT CGTGCCGCACGCTCAACAGACGCCGGCGGTTTTGACGAGACTGGGGAGGC CAATGCTGGTGGGAATAATGCAGGAGCCCTTCCTCCGGGAATGCGGCAAA TGCTAAACATTCCAGCGCCGGTCCCACAACCGCAAAGCAACCAGGTGAAG CCACGTTTACCCAGCTGAGACTCCTTCTTTTTTTTTTATCAGGCGTCACT TTTATCCGCTTCGATCTACCTCCGCTCAATTCAACCCAGCACGAGCTCAA CATTCTCTCGCGACACCTGAGACATCACACCCACCACCTTCCCATTTGTG TCGCGGTCATCTACAGGACACCCGGAGACGATTCGCCTCGATGGCCGTCA CCAAGCGGCGGCCACTCATGCAGAAGGCCGCGGCCGCTCCTGATCGAAAG CTGGGTGCTAAACGAAACTGGGAAGAGATGCTCGGTAGCTTGTTCTTGCT ATAGCGAATTAAAAGTTGGATTGGATCGCGAGTTATATTTTGATTTCGTT TCCATGGTGAACATCCATCGTCTAGTTAATAAATACCACACTGGAGTGGG GTGGGATGGAGTGGAGGAGCAAGGGAAATTATTATAGCGAAGGTGTGCGA TATAGACACTACTGAATTAGTTATCGATGTGTGCAACGATGGGGAGGGAA TGAAACGTTAAAAGAAACATTACTTGTAAGTCGGGGAACTGTATGTATAC GTCGAACCGCGGATGGATGCGCATAGAAGACAAACAATAATAGCTACTGG TACTCGACAACCTCCTTGGGACAGCCCATCTACGATGTCATCCTCCCGAG ATTGCCTTGGCCCTATGGCACACGTGGGCCCGTGGAATCTTCGTCGCTGT TTTTTCAGACACGGAACCCCTCGCGCATACCCGCAGACGCGAGGATGATC TAAATGAACCCTTCTTCGGGGAATGGCCC
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Coding sequence (CDS) from alignment at H-elongata_contig13643:2425..5153-

>mRNA_H-elongata_contig13643.2568.1 ID=mRNA_H-elongata_contig13643.2568.1|Name=mRNA_H-elongata_contig13643.2568.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig13643:2425..5153- (Himanthalia elongata Himel1 dioecious)
ATGGAACGGGCCCAAGCCAGGGTGCGAGAGTACGAGGACCAAAACCGTGG
CGAAATTACCAAAAACGCCGCGAAGAAATGGAACGGGCCCAAGCCAGGGT
GCGAGAGTACGAGGACCAAAACCGTGGCGAAATTACCAAAAACGCCGCGA
AGAAGGTTGATCGGGATAAACTTGTCGAGGAACAGCTCGCCGCTTTGAGA
CAGCAACAGGGTTGATCGGGATAAACTTGTCGAGGAACAGCTCGCCGCTT
TGAGACAGCAACAGGAAAGCCGCAAACACTACAACCAGCTCGAGGAGGCG
CGCAAGCTGCAGCACACGAGAAAGCTAAAGCTCGAGGCGCAGGAGGTGGC
GCTTGGGGAGCGAGATCGCGTCACCGCCAATATGGGAGACAACTTGTTTG
TTGGAAAGCCGCAAACACTACAACCAGCTCGAGGAGGCGCGCAAGCTGCA
GCACACGAGAAAGCTAAAGCTCGAGGCGCAGGAGGTGGCGCTTGGGGAGC
GAGATCGCGTCACCGCCAATATGGGAGACAACTTGTTTGTTGACGCCGGC
GGTTTTGACGAGACTGGGGAGGCCAATGCTGGTGGGAATAATGCAGGAGC
CCTTCCTCCGGGAATGCGGCAAATGCTAAACATTCCAGCGCCGGTCCCAC
AACCGCAAAGCAACCAGACGCCGGCGGTTTTGACGAGACTGGGGAGGCCA
ATGCTGGTGGGAATAATGCAGGAGCCCTTCCTCCGGGAATGCGGCAAATG
CTAAACATTCCAGCGCCGGTCCCACAACCGCAAAGCAACCAGGACACCCG
GAGACGATTCGCCTCGATGGCCGTCACCAAGCGGCGGCCACTCATGCAGA
AGGCCGCGGCCGCTCCTGATCGAAAGCTGGGTGCTAAACGAAACTGGGAA
GAGATGCTCGGTAGCTTGTTCTTGCTATAGGACACCCGGAGACGATTCGC
CTCGATGGCCGTCACCAAGCGGCGGCCACTCATGCAGAAGGCCGCGGCCG
CTCCTGATCGAAAGCTGGGTGCTAAACGAAACTGGGAAGAGATGCTCGGT
AGCTTGTTCTTGCTATAG
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