mRNA_H-elongata_contig13643.2568.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Match: D8LBU7_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBU7_ECTSI) HSP 1 Score: 366 bits (940), Expect = 1.350e-122 Identity = 202/259 (77.99%), Postives = 219/259 (84.56%), Query Frame = 1
Query: 1 RSELIPC-CLRRQVKRAGLTEKTLDELEVARDITVRKRITKIFNRLEEDFAGDLKAYNDYLETREDIIFGLCGGDKGEMERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYNQLEEARKLQHTRKLKLEAQEVALGERDRVTANMGDNLFV-----DAGGFDETG-EANAGGNNAGALPPGMRQMLNIPAPVPQPQSNQDTRRRFASMAVTKRRPLMQKAAAAPDRKLGAKRNWEEMLGSLF 756
R + PC + QV+RAGLTEKTLDELEVARDITVRKRITKIFNR EEDF GDL+AYNDYLET ED+I+GLC GDKGE +RAQA VREYED++RGEITKNAA+KVDR+K+VEEQLAALRQQQESRKHYNQLEEARK QH RKLKLEAQEVALGERD VTA MGD LF+ G D G E A GN A+P GMRQMLNIPAP+PQPQSNQDTRRRFASM+VT+RRP MQKAAAAPDR LGAKRNW EMLGSLF
Sbjct: 46 RRKTFPCPACQVQVRRAGLTEKTLDELEVARDITVRKRITKIFNRSEEDFGGDLRAYNDYLETMEDVIYGLCSGDKGEADRAQATVREYEDRHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTATMGDGLFLFLDSLTGEGLDGAGGEPGANGNAPAAVPAGMRQMLNIPAPLPQPQSNQDTRRRFASMSVTERRPRMQKAAAAPDRALGAKRNWVEMLGSLF 304
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Match: A0A835Z320_9STRA (CDK-activating kinase assembly factor MAT1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z320_9STRA) HSP 1 Score: 166 bits (421), Expect = 7.430e-45 Identity = 112/248 (45.16%), Postives = 152/248 (61.29%), Query Frame = 1
Query: 16 PCCLRRQVKRAGLTEKTLDELEVARDITVRKRITKIFNRLEEDFAGDLKAYNDYLETREDIIFGLCGGDKGEMERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYNQLEEARKLQHTRKLKLEAQEVALGERDRVTANMGDNLFV-DAGGFDETGEANAGGNNAGALPPGMRQMLNIPAPVPQPQSNQDTRRRFASMAVTKRRPLMQKAAAAPDRKLGAKRNWEEMLGSLF 756
P C ++ VKR GLT+KTLDEL V +++T R+RI KIFN+ EEDF L+ YN+YL ED+I+ L G ++E A++R YED +R EI +N A+ +D ++VE+ +AA QQ+E+RKH Q E R RK+ EA EVALGER+ VT+ + D L + D GG D A AGAL PG R ++ I AP+PQP + T+R + +M R + A AP R G +RNW E GSLF
Sbjct: 48 PKC-KKDVKRTGLTQKTLDELAVQKELTHRRRILKIFNKTEEDFETLLE-YNNYLAEVEDLIYDLTNG--VDVEACLAKIRAYEDAHREEIIQNQARDMDTQRVVEQTIAAHAQQEETRKHDKQAEAQRLRLKRRKMHAEAVEVALGEREAVTSTLMDVLVLGDGGGADGXXXAAP----AGALLPGQRMLIQINAPLPQPILHSATKRLYENMPPRARAAARRDAGGAPSRADGMRRNWFEACGSLF 287
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Match: A0A7S1GHB7_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GHB7_CYCTE) HSP 1 Score: 92.4 bits (228), Expect = 1.960e-17 Identity = 57/150 (38.00%), Postives = 99/150 (66.00%), Query Frame = 1
Query: 37 VKRAGLTEKTLDELEVARDITVRKRITKIFNRLEEDFAGDLKAYNDYLETREDIIFGLCGGDKGEMERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYNQLEEARKLQHT-RKLKLEAQEVALGERDRVTANM 483
VKR L+ +TLD+++ +D + R+R+TK+FN++E DF+ L+ YN+YLE EDII+ + ++ E +A+V+ YE+ N+ +I +++ D ++ + +++AA +++ E RK +EE R + T RK K EA EV LGER+ V+A +
Sbjct: 65 VKRVTLSTRTLDDVQCEKDTSWRRRVTKVFNKIESDFSTLLE-YNNYLEEVEDIIYAIVN-EEPNAEEMKAKVKAYEEANKSQIVIRQSQRADEERSIADRIAAEQREVERRKR-EVIEEERAIALTKRKYKQEAAEVLLGEREEVSAEL 211
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Match: A0A6U3Q473_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q473_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 2.980e-17 Identity = 58/164 (35.37%), Postives = 104/164 (63.41%), Query Frame = 1
Query: 1 RSELIPCCL-RRQVKRAGLTEKTLDELEVARDITVRKRITKIFNRLEEDFAGDLKAYNDYLETREDIIFGLCGGDKGEMERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYNQLEEARKL--QHTRKLKLEAQEVALGERDRVTANM 483
R ++ PC + VKR L+ +TLD+++ +D + R+R+ K++N++E DF L+ YN+YLE EDII+ + ++ E +A+V+ YE+ N+GEI +++ D ++ + +++AA +Q+E+ + EE K Q KLKL++ +VALGER+ V+A +
Sbjct: 58 RRKVFPCPVCETAVKRVTLSTRTLDDVQCEKDTSWRRRVLKVYNKVETDFPSLLE-YNNYLEEVEDIIYSIVN-EEPNAEEVKAKVKAYEEANKGEIVIRQSQRADEERSMADRIAA--EQREAXXXXREFEEEEKFKKQTKAKLKLQSTQVALGEREEVSAEL 217
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Match: A0A6U3UWA8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3UWA8_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 4.060e-17 Identity = 58/162 (35.80%), Postives = 100/162 (61.73%), Query Frame = 1
Query: 1 RSELIPCCL-RRQVKRAGLTEKTLDELEVARDITVRKRITKIFNRLEEDFAGDLKAYNDYLETREDIIFGLCGGDKGEMERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYNQLEEARKLQHTRKLKLEAQEVALGERDRVTANM 483
R + PC + + VKR L+ +TLD+L+ +D + R+RI KI+N++E+DF L+ YN+YLE EDIIF + ++ E +A+V+ YE++N+ +I +++ D ++ + +++A+ ++ E RK + E RK K E EV LGERD+V+A +
Sbjct: 56 RRKTFPCPICKTVVKRVTLSTRTLDDLQCEKDTSWRRRILKIYNKVEKDFPTLLE-YNNYLEEVEDIIFSIVN-EEPNAEEVKAKVKAYEEKNKSQIVIRQSQRADEERCIADRIASETREAERRKREFEEVEKAVASTKRKFKQETTEVMLGERDQVSAEV 215
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Match: A0A7S2R033_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R033_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 2.450e-15 Identity = 50/159 (31.45%), Postives = 99/159 (62.26%), Query Frame = 1
Query: 1 RSELIPCCL-RRQVKRAGLTEKTLDELEVARDITVRKRITKIFNRLEEDFAGDLKAYNDYLETREDIIFGLCGGDKGEMERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYNQLEEARKLQHTRKLKLEAQEVALGERDRVT 474
R ++ PC + VKR LT +TLD+++ +D + RKR+ K++N++E DF L+ YN+YLE E I+F + ++ + E +A++++YE++N+ +I +++ D ++ + +++AA ++ E ++ L E +K K E+ +V LGERD+++
Sbjct: 13 RRKVFPCPICETPVKRVTLTTRTLDDVQCEKDTSWRKRVMKVYNKVESDFPSLLE-YNNYLEEVECIVFSIVN-EESDAEEQKAKLKKYEEENKSQIVIRQSQRADEERSIADRIAAEQRDAERKRRECILGERAIALSKKKYKEESTQVMLGERDQIS 169
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Match: D0N908_PHYIT (RING-type domain-containing protein n=13 Tax=Peronosporaceae TaxID=4777 RepID=D0N908_PHYIT) HSP 1 Score: 84.7 bits (208), Expect = 1.270e-14 Identity = 54/150 (36.00%), Postives = 88/150 (58.67%), Query Frame = 1
Query: 16 PCCLRRQVKRAGLTEKTLDELEVARDITVRKRITKIFNRLEEDFAGDLKAYNDYLETREDIIFGLCGGDKGEMERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYNQLEEARKLQHTRKLKLEAQEVALGERD 465
P C ++ VK++ L +KT++EL A++ +VRK++TK +N+ E+DF L+ YNDYLET E++IF L GD E AQ + ++Y ++ I N AKK D ++ + + +A + E+++ + K + EVALGERD
Sbjct: 61 PAC-QKPVKKSQLQDKTIEELNFAKETSVRKKVTKDYNKTEDDF-DTLEEYNDYLETLENLIFDLVYGDDAEKAAAQKQWKQYRQEHAIAIATNDAKKADEERRIAQLIAEQQXXXXXXXXXXXKEDSQFEADLERQKAQLMEVALGERD 208
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Match: A0A024G1S9_9STRA (RING-type domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024G1S9_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 6.810e-14 Identity = 52/150 (34.67%), Postives = 86/150 (57.33%), Query Frame = 1
Query: 16 PCCLRRQVKRAGLTEKTLDELEVARDITVRKRITKIFNRLEEDFAGDLKAYNDYLETREDIIFGLCGGDKGEMERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYNQLEEARKLQHTRKLKLEAQEVALGERD 465
P C + VK++ L +KT++E+ +++++RK++ K +N+ E+DF L+ YNDYLET E++IF L GD E RAQ + + Y +N I N AKK + ++ + L ++ Q E+++ + + E EVALGERD
Sbjct: 55 PTCSK-PVKKSQLQDKTIEEINYTKEVSIRKKVLKDYNKTEDDFVT-LEEYNDYLETLENLIFDLVYGDDEEKGRAQKQWKMYRQENLAVIATNDAKKAEEERRISHLLTEQQRIXXXXXLLQQKEDSQFEADVERQRAELMEVALGERD 202
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Match: K3WVU4_GLOUD (RING-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVU4_GLOUD) HSP 1 Score: 82.4 bits (202), Expect = 7.860e-14 Identity = 53/152 (34.87%), Postives = 88/152 (57.89%), Query Frame = 1
Query: 13 IPC-CLRRQVKRAGLTEKTLDELEVARDITVRKRITKIFNRLEEDFAGDLKAYNDYLETREDIIFGLCGGDKGEMERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYNQLEEARKLQHTRKLKLEAQEVALGERD 465
IPC ++ VK++ L +KT++EL A++ ++RK++TK +N+ E+DF+ + YNDYLE E++IF L GD E AQ + ++Y +N I N AKK D ++ + + + Q E+++ ++ K + EVALGERD
Sbjct: 57 IPCPACQKLVKKSQLQDKTIEELNYAKETSMRKKVTKDYNKTEDDFSTT-EEYNDYLEVLENLIFDLVYGDDNEKAAAQKQWKQYRMENAIAIATNDAKKADEERRIAQLIGEQXXXXXXXXXXXQREDSQFEADLQRQKAQLMEVALGERD 207
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Match: H3GLZ6_PHYRM (RING-type domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=H3GLZ6_PHYRM) HSP 1 Score: 82.0 bits (201), Expect = 1.040e-13 Identity = 53/150 (35.33%), Postives = 87/150 (58.00%), Query Frame = 1
Query: 16 PCCLRRQVKRAGLTEKTLDELEVARDITVRKRITKIFNRLEEDFAGDLKAYNDYLETREDIIFGLCGGDKGEMERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYNQLEEARKLQHTRKLKLEAQEVALGERD 465
P C + VK++ L +KT++EL A++ +VRK++TK +N+ E+DF L +ND+LET E++IF L GD E AQ + ++Y +N I N AKK D ++ + + +A ++ E+++ + K + EVALGERD
Sbjct: 61 PAC-EKPVKKSQLQDKTIEELNFAKETSVRKKVTKDYNKTEDDF-DTLDEFNDFLETLENLIFDLVYGDDVEKAAAQKQWKQYRQENAIAIATNDAKKADEERRIAQLIAEQQRXXXXXXXXXXREDSQFEADLERQKAQLMEVALGERD 208 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13643.2568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13643.2568.1 >prot_H-elongata_contig13643.2568.1 ID=prot_H-elongata_contig13643.2568.1|Name=mRNA_H-elongata_contig13643.2568.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp MERAQARVREYEDQNRGEITKNAAKKVDRDKLVEEQLAALRQQQESRKHYback to top mRNA from alignment at H-elongata_contig13643:2425..5153- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13643.2568.1 ID=mRNA_H-elongata_contig13643.2568.1|Name=mRNA_H-elongata_contig13643.2568.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2729bp|location=Sequence derived from alignment at H-elongata_contig13643:2425..5153- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13643:2425..5153- >mRNA_H-elongata_contig13643.2568.1 ID=mRNA_H-elongata_contig13643.2568.1|Name=mRNA_H-elongata_contig13643.2568.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig13643:2425..5153- (Himanthalia elongata Himel1 dioecious)back to top |