mRNA_H-elongata_contig136401.2567.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136401.2567.1
Unique NamemRNA_H-elongata_contig136401.2567.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig136401.2567.1 vs. uniprot
Match: A0A6H5JFM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM8_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.830e-37
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:   28 CWGRQTEYERDCYHAEALKLDQYPLTKEMLQRSVPYDTPDLAIHRAFQIGRARGLLKVVVIGGSVTFGHKCLSPAGFHNKGCAWPNRLQQWFDHRIQDFRVEVL 339
            CW     +ERDC+H E L LD YPLT EM  R++ Y T DL++HRAF+  R RG+LKVVV+GGSVT+GH C SP G     CAWP+R++QWF    +D  +EVL
Sbjct:   93 CWETHGVFERDCFHDETLTLDPYPLTPEMFPRAIRYSTSDLSLHRAFRRARGRGVLKVVVLGGSVTYGHDCSSPTGLKGNDCAWPHRVEQWFQEEYEDLDIEVL 196
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BLAST of mRNA_H-elongata_contig136401.2567.1 vs. uniprot
Match: D7FNS8_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNS8_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 7.890e-37
Identity = 61/104 (58.65%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:   28 CWGRQTEYERDCYHAEALKLDQYPLTKEMLQRSVPYDTPDLAIHRAFQIGRARGLLKVVVIGGSVTFGHKCLSPAGFHNKGCAWPNRLQQWFDHRIQDFRVEVL 339
            CW    EYE DC+H E L   QYPLT+EMLQR+VPY+T  + +HRAF   +A G+LKVV IGGSVTFG  C SP G  N  CAWP+RL QWF   + DF+VEV+
Sbjct:  125 CWETHGEYELDCFHDEPLVWKQYPLTQEMLQRTVPYNTSGIHLHRAFNTAKANGVLKVVAIGGSVTFGRSCESPKGLANNACAWPHRLDQWFRAEVGDFKVEVV 228
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BLAST of mRNA_H-elongata_contig136401.2567.1 vs. uniprot
Match: A0A6H5JTT5_9PHAE (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT5_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 6.950e-35
Identity = 58/103 (56.31%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:   28 CWGRQTEYERDCYHAEALKLDQYPLTKEMLQRSVPYDTPDLAIHRAFQIGRARGLLKVVVIGGSVTFGHKCLSPAGFHNKGCAWPNRLQQWFDHRIQDFRVEV 336
            CW     +ERDC+H E L LD YPLT EM  R++ Y T DL +HRAF+  R RG+LKVVV+GGSVTFGH+C SPAG     CAWP+R++QWF    +D  +EV
Sbjct:   66 CWETHGVFERDCFHDETLTLDPYPLTPEMFPRAIRYSTSDLTLHRAFRRARGRGVLKVVVLGGSVTFGHECSSPAGLEGIACAWPHRVEQWFQEENEDLDIEV 168
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BLAST of mRNA_H-elongata_contig136401.2567.1 vs. uniprot
Match: D8LJK3_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK3_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 7.470e-34
Identity = 56/103 (54.37%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:   28 CWGRQTEYERDCYHAEALKLDQYPLTKEMLQRSVPYDTPDLAIHRAFQIGRARGLLKVVVIGGSVTFGHKCLSPAGFHNKGCAWPNRLQQWFDHRIQDFRVEV 336
            CW     +E DC+H E L LD YPL  EM  R++ Y T DL++HRAF+  R RG+LKVVV+GGSVT+GH C SPAG    GCAWP+R++QWF    +D  +EV
Sbjct:   38 CWETHGVFECDCFHDETLTLDPYPLKPEMFARAIRYSTSDLSLHRAFRRARGRGVLKVVVLGGSVTYGHDCSSPAGLKGNGCAWPHRVEQWFQEEYEDLDIEV 140
[Close]
BLAST of mRNA_H-elongata_contig136401.2567.1 vs. uniprot
Match: D7FNS9_ECTSI (SGNH_hydro domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNS9_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.430e-12
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:  187 GLLKVVVIGGSVTFGHKCLSPAGFHNKGCAWPNRLQQWFDHRIQDFRVEVL 339
            G+LKVV IGGSVTFG  C SP G     CAWP+RL+QWF  ++ DF VEV+
Sbjct:    4 GVLKVVAIGGSVTFGRNCESPNGLTFNACAWPHRLEQWFQEKVGDFEVEVV 54
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136401.2567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JFM8_9PHAE1.830e-3754.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNS8_ECTSI7.890e-3758.65SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JTT5_9PHAE6.950e-3556.31SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
D8LJK3_ECTSI7.470e-3454.37SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
D7FNS9_ECTSI1.430e-1260.78SGNH_hydro domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136401contigH-elongata_contig136401:974..1312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size339
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929809.5959487-CDS-H-elongata_contig136401:973..13121622929809.5959487-CDS-H-elongata_contig136401:973..1312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136401 974..1312 -
1691679166.028791-CDS-H-elongata_contig136401:973..13121691679166.028791-CDS-H-elongata_contig136401:973..1312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136401 974..1312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136401.2567.1prot_H-elongata_contig136401.2567.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136401 974..1312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136401.2567.1

>prot_H-elongata_contig136401.2567.1 ID=prot_H-elongata_contig136401.2567.1|Name=mRNA_H-elongata_contig136401.2567.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MDGADNVTTCWGRQTEYERDCYHAEALKLDQYPLTKEMLQRSVPYDTPDL
AIHRAFQIGRARGLLKVVVIGGSVTFGHKCLSPAGFHNKGCAWPNRLQQW
FDHRIQDFRVEVL
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mRNA from alignment at H-elongata_contig136401:974..1312-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136401.2567.1 ID=mRNA_H-elongata_contig136401.2567.1|Name=mRNA_H-elongata_contig136401.2567.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=339bp|location=Sequence derived from alignment at H-elongata_contig136401:974..1312- (Himanthalia elongata Himel1 dioecious)
ATGGATGGAGCTGATAATGTCACTACTTGTTGGGGGCGACAAACGGAATA
CGAACGTGATTGTTATCATGCAGAGGCTCTAAAACTGGACCAATACCCTC
TTACGAAGGAAATGCTGCAGCGCTCCGTACCCTACGATACGCCAGATCTC
GCCATCCACCGGGCTTTCCAAATTGGGAGAGCTCGAGGATTGCTGAAGGT
GGTGGTGATCGGTGGGAGCGTAACCTTTGGACACAAGTGCCTGTCGCCTG
CGGGGTTTCATAACAAGGGCTGCGCTTGGCCCAACCGGCTGCAGCAATGG
TTTGACCATCGGATTCAAGACTTCAGGGTCGAGGTACTT
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Coding sequence (CDS) from alignment at H-elongata_contig136401:974..1312-

>mRNA_H-elongata_contig136401.2567.1 ID=mRNA_H-elongata_contig136401.2567.1|Name=mRNA_H-elongata_contig136401.2567.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig136401:974..1312- (Himanthalia elongata Himel1 dioecious)
ATGGATGGAGCTGATAATGTCACTACTTGTTGGGGGCGACAAACGGAATA
CGAACGTGATTGTTATCATGCAGAGGCTCTAAAACTGGACCAATACCCTC
TTACGAAGGAAATGCTGCAGCGCTCCGTACCCTACGATACGCCAGATCTC
GCCATCCACCGGGCTTTCCAAATTGGGAGAGCTCGAGGATTGCTGAAGGT
GGTGGTGATCGGTGGGAGCGTAACCTTTGGACACAAGTGCCTGTCGCCTG
CGGGGTTTCATAACAAGGGCTGCGCTTGGCCCAACCGGCTGCAGCAATGG
TTTGACCATCGGATTCAAGACTTCAGGGTCGAGGTACTTATGGATGGAGC
TGATAATGTCACTACTTGTTGGGGGCGACAAACGGAATACGAACGTGATT
GTTATCATGCAGAGGCTCTAAAACTGGACCAATACCCTCTTACGAAGGAA
ATGCTGCAGCGCTCCGTACCCTACGATACGCCAGATCTCGCCATCCACCG
GGCTTTCCAAATTGGGAGAGCTCGAGGATTGCTGAAGGTGGTGGTGATCG
GTGGGAGCGTAACCTTTGGACACAAGTGCCTGTCGCCTGCGGGGTTTCAT
AACAAGGGCTGCGCTTGGCCCAACCGGCTGCAGCAATGGTTTGACCATCG
GATTCAAGACTTCAGGGTCGAGGTACTT
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