mRNA_H-elongata_contig136383.2566.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136383.2566.1
Unique NamemRNA_H-elongata_contig136383.2566.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig136383.2566.1 vs. uniprot
Match: D7G5C4_ECTSI (Nascent polypeptide-associated complex subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5C4_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 4.560e-18
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    7 ADDKKLTTTLKRIGVTNIPAIEEVNMFTNDGEVIHFVGPK 126
            +DDKKLTTTLKRIGVTNIPAIEEVNMF NDGEVIHFVGPK
Sbjct:   36 SDDKKLTTTLKRIGVTNIPAIEEVNMFKNDGEVIHFVGPK 75
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BLAST of mRNA_H-elongata_contig136383.2566.1 vs. uniprot
Match: A0A7S2WUD9_9STRA (Nascent polypeptide-associated complex subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUD9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.070e-13
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    4 AADDKKLTTTLKRIGVTNIPAIEEVNMFTNDGEVIHFVGPK 126
            ++DDKKL+TTLK++GVTNIPAIEEVN+FTN G VIHF  PK
Sbjct:   66 SSDDKKLSTTLKKLGVTNIPAIEEVNLFTNGGNVIHFQNPK 106
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BLAST of mRNA_H-elongata_contig136383.2566.1 vs. uniprot
Match: A0A7S2GVT8_9STRA (Nascent polypeptide-associated complex subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GVT8_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.140e-13
Identity = 30/40 (75.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    7 ADDKKLTTTLKRIGVTNIPAIEEVNMFTNDGEVIHFVGPK 126
            +DDKKL +TLK++GVTNIPAIEEVN+FTNDG+V+HF  PK
Sbjct:   64 SDDKKLGSTLKKLGVTNIPAIEEVNLFTNDGKVVHFSNPK 103
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BLAST of mRNA_H-elongata_contig136383.2566.1 vs. uniprot
Match: A0A836CCH6_9STRA (Nascent polypeptide-associated complex subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCH6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.110e-13
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    4 AADDKKLTTTLKRIGVTNIPAIEEVNMFTNDGEVIHFVGPK 126
            +ADDKKL T LK++G TNIPAIEEVNMF ++GEVIHFV PK
Sbjct:   48 SADDKKLMTALKKLGTTNIPAIEEVNMFQDNGEVIHFVNPK 88
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BLAST of mRNA_H-elongata_contig136383.2566.1 vs. uniprot
Match: A0A6V1P391_HETAK (Nascent polypeptide-associated complex subunit beta n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P391_HETAK)

HSP 1 Score: 68.2 bits (165), Expect = 4.270e-13
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    7 ADDKKLTTTLKRIGVTNIPAIEEVNMFTNDGEVIHFVGPK 126
            +DDKKL TTLK++GVTNIPAIEEVN+F  +GEVIHFV PK
Sbjct:   45 SDDKKLGTTLKKLGVTNIPAIEEVNLFKQNGEVIHFVNPK 84
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BLAST of mRNA_H-elongata_contig136383.2566.1 vs. uniprot
Match: A0A8J2WZC4_9STRA (Nascent polypeptide-associated complex subunit beta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZC4_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.860e-13
Identity = 30/40 (75.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    7 ADDKKLTTTLKRIGVTNIPAIEEVNMFTNDGEVIHFVGPK 126
            +DDKKL +TLK++GVTNIPAIEEVN+FT+DG+VIHF  PK
Sbjct:   42 SDDKKLGSTLKKLGVTNIPAIEEVNLFTSDGKVIHFSNPK 81
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BLAST of mRNA_H-elongata_contig136383.2566.1 vs. uniprot
Match: F0YK21_AURAN (Nascent polypeptide-associated complex subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YK21_AURAN)

HSP 1 Score: 67.0 bits (162), Expect = 9.430e-13
Identity = 29/40 (72.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    7 ADDKKLTTTLKRIGVTNIPAIEEVNMFTNDGEVIHFVGPK 126
            +DDKKL +TLK++GVTNIPAIEEVN+FT+DG+V+HF  PK
Sbjct:   33 SDDKKLGSTLKKLGVTNIPAIEEVNLFTSDGKVVHFSNPK 72
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BLAST of mRNA_H-elongata_contig136383.2566.1 vs. uniprot
Match: F0YGQ0_AURAN (Nascent polypeptide-associated complex subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGQ0_AURAN)

HSP 1 Score: 65.9 bits (159), Expect = 3.560e-12
Identity = 29/40 (72.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    7 ADDKKLTTTLKRIGVTNIPAIEEVNMFTNDGEVIHFVGPK 126
            +DDKKL +TLK++GVTNIPAIEEVN+FT DG+V+HF  PK
Sbjct:   42 SDDKKLGSTLKKLGVTNIPAIEEVNLFTADGKVVHFSNPK 81
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BLAST of mRNA_H-elongata_contig136383.2566.1 vs. uniprot
Match: A0A7S2XW83_9STRA (Nascent polypeptide-associated complex subunit beta n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW83_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.690e-12
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    7 ADDKKLTTTLKRIGVTNIPAIEEVNMFTNDGEVIHFVGPK 126
            +DDKKL TTLK++GVTNIPAIEEVN+F  +GEVIHF  PK
Sbjct:   46 SDDKKLGTTLKKLGVTNIPAIEEVNLFKENGEVIHFSNPK 85
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BLAST of mRNA_H-elongata_contig136383.2566.1 vs. uniprot
Match: A0A6U1BIA3_9STRA (Nascent polypeptide-associated complex subunit beta n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U1BIA3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 7.200e-12
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    4 AADDKKLTTTLKRIGVTNIPAIEEVNMFTNDGEVIHFVGPK 126
            A DD KL+TTLK++G TNIP IEEVN+F  DG+VIHFV PK
Sbjct:   46 ARDDAKLSTTLKKLGATNIPGIEEVNLFKEDGKVIHFVNPK 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136383.2566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5C4_ECTSI4.560e-1895.00Nascent polypeptide-associated complex subunit bet... [more]
A0A7S2WUD9_9STRA2.070e-1375.61Nascent polypeptide-associated complex subunit bet... [more]
A0A7S2GVT8_9STRA3.140e-1375.00Nascent polypeptide-associated complex subunit bet... [more]
A0A836CCH6_9STRA4.110e-1375.61Nascent polypeptide-associated complex subunit bet... [more]
A0A6V1P391_HETAK4.270e-1377.50Nascent polypeptide-associated complex subunit bet... [more]
A0A8J2WZC4_9STRA7.860e-1375.00Nascent polypeptide-associated complex subunit bet... [more]
F0YK21_AURAN9.430e-1372.50Nascent polypeptide-associated complex subunit bet... [more]
F0YGQ0_AURAN3.560e-1272.50Nascent polypeptide-associated complex subunit bet... [more]
A0A7S2XW83_9STRA3.690e-1275.00Nascent polypeptide-associated complex subunit bet... [more]
A0A6U1BIA3_9STRA7.200e-1270.73Nascent polypeptide-associated complex subunit bet... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136383contigH-elongata_contig136383:107..247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue1.8e-13
Seed eggNOG ortholog2880.D7G5C4
Preferred nameBTF3L4
KEGG koko:K01527
KEGG Pathwayko04214,map04214
GOsGO:0000003,GO:0000578,GO:0001700,GO:0001701,GO:0003002,GO:0003006,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0005844,GO:0005854,GO:0006139,GO:0006351,GO:0006366,GO:0006403,GO:0006457,GO:0006458,GO:0006605,GO:0006612,GO:0006613,GO:0006620,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0007028,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007317,GO:0007318,GO:0007350,GO:0007351,GO:0007389,GO:0008104,GO:0008150,GO:0008152,GO:0008298,GO:0008358,GO:0008565,GO:0008595,GO:0009056,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009798,GO:0009880,GO:0009948,GO:0009952,GO:0009987,GO:0009994,GO:0010467,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0016070,GO:0016236,GO:0018130,GO:0019438,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0030014,GO:0030015,GO:0030154,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035282,GO:0042788,GO:0042886,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043900,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045047,GO:0045184,GO:0045595,GO:0045995,GO:0046483,GO:0046907,GO:0048468,GO:0048469,GO:0048477,GO:0048519,GO:0048523,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051082,GO:0051083,GO:0051128,GO:0051179,GO:0051234,GO:0051239,GO:0051641,GO:0051649,GO:0051704,GO:0060281,GO:0060284,GO:0060341,GO:0060548,GO:0060810,GO:0060811,GO:0061919,GO:0065007,GO:0070201,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902875,GO:1903429,GO:1904580,GO:1905879,GO:1990904,GO:2000026,GO:2000241
EggNOG free text desc.protein transport
EggNOG OGsKOG2240@1,KOG2240@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929809.5503223-CDS-H-elongata_contig136383:106..2471622929809.5503223-CDS-H-elongata_contig136383:106..247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136383 107..247 -
1691679166.0168486-CDS-H-elongata_contig136383:106..2471691679166.0168486-CDS-H-elongata_contig136383:106..247Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136383 107..247 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136383.2566.1prot_H-elongata_contig136383.2566.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136383 107..247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136383.2566.1

>prot_H-elongata_contig136383.2566.1 ID=prot_H-elongata_contig136383.2566.1|Name=mRNA_H-elongata_contig136383.2566.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
MAADDKKLTTTLKRIGVTNIPAIEEVNMFTNDGEVIHFVGPKGKGV*
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mRNA from alignment at H-elongata_contig136383:107..247-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136383.2566.1 ID=mRNA_H-elongata_contig136383.2566.1|Name=mRNA_H-elongata_contig136383.2566.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig136383:107..247- (Himanthalia elongata Himel1 dioecious)
ATGGCTGCAGATGACAAAAAGCTTACAACGACGCTGAAGCGCATCGGTGT
GACCAACATCCCCGCGATCGAGGAAGTAAACATGTTCACAAACGACGGCG
AGGTGATCCACTTCGTCGGGCCAAAGGGTAAGGGAGTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig136383:107..247-

>mRNA_H-elongata_contig136383.2566.1 ID=mRNA_H-elongata_contig136383.2566.1|Name=mRNA_H-elongata_contig136383.2566.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig136383:107..247- (Himanthalia elongata Himel1 dioecious)
ATGGCTGCAGATGACAAAAAGCTTACAACGACGCTGAAGCGCATCGGTGT
GACCAACATCCCCGCGATCGAGGAAGTAAACATGTTCACAAACGACGGCG
AGGTGATCCACTTCGTCGGGCCAAAGGGTAAGGGAGTTTGAATGGCTGCA
GATGACAAAAAGCTTACAACGACGCTGAAGCGCATCGGTGTGACCAACAT
CCCCGCGATCGAGGAAGTAAACATGTTCACAAACGACGGCGAGGTGATCC
ACTTCGTCGGGCCAAAGGGTAAGGGAGTTTGA
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