mRNA_H-elongata_contig13623.2561.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13623.2561.1
Unique NamemRNA_H-elongata_contig13623.2561.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig13623.2561.1 vs. uniprot
Match: D8LN78_ECTSI (Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN78_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 9.500e-24
Identity = 68/126 (53.97%), Postives = 82/126 (65.08%), Query Frame = 1 
Query:  355 GAYSAVPA-GAPAGVLRSAVLMYDAAELGGRLLAARLKAAEAGQSRDGDGDGVGWVGLAAALEFEGLSGTVKMDSSGNRRGMDVSFWLVEGKAVDGCWYTSGKEAARFTQDTGEVQLLQEIEWPAA 729
            G Y A P  G P G+L +  LM+DA ELG R+LAA      AG+     GDG GW GLAA + FEGLSG V+MD  GNR GMDVSF L+EG   DG  Y SGKEAAR+   +  VQLL+ ++WPA+
Sbjct:  437 GDYRASPDDGVPRGLLTATALMFDAVELGMRVLAA------AGRRVGRVGDG-GWAGLAAGVGFEGLSGKVEMDDLGNRMGMDVSFRLMEGVTADGASYVSGKEAARYDSASETVQLLRHMQWPAS 555
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BLAST of mRNA_H-elongata_contig13623.2561.1 vs. uniprot
Match: A0A6H5JK37_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK37_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 6.580e-22
Identity = 61/117 (52.14%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:  379 GAPAGVLRSAVLMYDAAELGGRLLAARLKAAEAGQSRDGDGDGVGWVGLAAALEFEGLSGTVKMDSSGNRRGMDVSFWLVEGKAVDGCWYTSGKEAARFTQDTGEVQLLQEIEWPAA 729
            G P G+L +  LM+DA ELG R+LAA      AG+     GDG GW GLAA + FEGLSG ++MD  GNR+GMDVSF L+EG    G  + SGKEAAR+   +  VQLL++++WPA+
Sbjct:  428 GVPRGLLTATALMFDAVELGMRVLAA------AGRRGGMVGDG-GWAGLAAGVGFEGLSGKLEMDDLGNRKGMDVSFRLMEGVTAYGISFVSGKEAARYDSASETVQLLRQMQWPAS 537
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13623.2561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN78_ECTSI9.500e-2453.97Tyrosine kinase specific for activated (GTP-bound)... [more]
A0A6H5JK37_9PHAE6.580e-2252.14Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13623contigH-elongata_contig13623:4643..6635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue6.1e-22
Seed eggNOG ortholog2880.D8LN78
KEGG koko:K17535
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons3
Model size916
Cds size915
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13623.2561.1prot_H-elongata_contig13623.2561.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13623 4643..6634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929808.7955961-CDS-H-elongata_contig13623:4642..52031622929808.7955961-CDS-H-elongata_contig13623:4642..5203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13623 4643..5203 +
1691679165.6378944-CDS-H-elongata_contig13623:4642..52031691679165.6378944-CDS-H-elongata_contig13623:4642..5203Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13623 4643..5203 +
1622929808.811701-CDS-H-elongata_contig13623:5542..56801622929808.811701-CDS-H-elongata_contig13623:5542..5680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13623 5543..5680 +
1691679165.6503882-CDS-H-elongata_contig13623:5542..56801691679165.6503882-CDS-H-elongata_contig13623:5542..5680Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13623 5543..5680 +
1622929808.8249679-CDS-H-elongata_contig13623:6418..66341622929808.8249679-CDS-H-elongata_contig13623:6418..6634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13623 6419..6634 +
1691679165.6604989-CDS-H-elongata_contig13623:6418..66341691679165.6604989-CDS-H-elongata_contig13623:6418..6634Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13623 6419..6634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13623.2561.1

>prot_H-elongata_contig13623.2561.1 ID=prot_H-elongata_contig13623.2561.1|Name=mRNA_H-elongata_contig13623.2561.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=305bp
VGGEVLKGATPSRDGCHLKPPSRTQRAPFPLLSRLETIDDDRGSSDDTTS
EEPSVAHDGKFSSERHSCDEKDASCGPNAIGDVNPDLSSGAHVSNVKVDG
VGSKGLVAACGLRASLVDGAYSAVPAGAPAGVLRSAVLMYDAAELGGRLL
AARLKAAEAGQSRDGDGDGVGWVGLAAALEFEGLSGTVKMDSSGNRRGMD
VSFWLVEGKAVDGCWYTSGKEAARFTQDTGEVQLLQEIEWPAAQLPQQPR
QDGPWDSHVLNALLLGMTLLTAVAAFGAVQHLGIWWRYRRHPHQEQQEAR
PEVDA
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mRNA from alignment at H-elongata_contig13623:4643..6635+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13623.2561.1 ID=mRNA_H-elongata_contig13623.2561.1|Name=mRNA_H-elongata_contig13623.2561.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1993bp|location=Sequence derived from alignment at H-elongata_contig13623:4643..6635+ (Himanthalia elongata Himel1 dioecious)
GTTGGCGGCGAGGTCCTCAAGGGCGCTACTCCTTCTCGAGATGGGTGTCA
TTTGAAGCCCCCAAGTAGAACACAACGGGCACCGTTTCCGCTTCTGTCTC
GACTTGAAACGATTGATGATGACCGCGGCAGCAGCGACGACACAACCTCG
GAGGAACCTAGCGTGGCACACGATGGAAAATTTTCCAGCGAGCGTCACAG
CTGCGATGAGAAGGATGCTTCTTGTGGACCGAACGCCATCGGCGATGTCA
ACCCCGACCTCTCTTCTGGTGCTCACGTGTCGAACGTGAAGGTCGACGGC
GTTGGAAGCAAGGGGCTAGTTGCGGCGTGTGGACTACGTGCAAGCCTTGT
GGATGGGGCGTATAGCGCTGTTCCTGCGGGCGCACCGGCCGGTGTACTGC
GATCGGCGGTGCTCATGTACGACGCCGCGGAGCTAGGGGGGCGATTACTA
GCCGCCAGGTTGAAGGCCGCCGAAGCGGGCCAATCGCGTGACGGTGATGG
TGACGGCGTAGGTTGGGTGGGGTTGGCGGCGGCCTTGGAGTTCGAGGGTC
TTTCGGGCACGGTAAGAATCGATCGCGAGCGAGAGGAGGCCATTTTTTTG
CCTAGCCGTCTCGGTGAAGATGCTGTAGGAACTTTATACTGAAAATAGCA
TAGATCTCTCTACATTTATCCAGTTAGTAGTAAACGAAGTAACGTGTAAA
GCTGTGAGGAGTAGTTTAGTCTCGACTGTTGTGAGAGCAGAAGAGGTCCA
AATTGCCCAGATTCCCTTCCGCTTGTGCGTAAGTTGCCTATGGTGCAAAG
ATCTGCGGTTTTGGGCTTTGAAGGGGGAGGGATGTCTTCTTAGAGTCCGG
TCTCGTCTGACCCCCCTCCAATTCACACAAACATAAACACACACCCTTAG
GTCAAAATGGACAGCAGCGGTAACCGTCGCGGGATGGACGTCTCCTTCTG
GTTGGTGGAAGGCAAAGCAGTGGACGGATGCTGGTACACGTCGGGGAAGG
AGGCTGCTCGTTTCACGCAAGACACCGGCGAAGTACAGGCAAGATGGTGG
TCAATTTGGGTACGGTACGTCGTAGGTGGTGACGATTTTCTTTCTTTTTG
AAAAGCTAGAACAAACAACTCATGCTTTTTACGTTTATATTGTAATTCCC
TATTTCACTGACGATGAAAGCCAACAGCTGGCCATGACGCTCATATGCAA
CCATGCGAACAAGACTTTCGACGAAGGCGCCTCTGTTTTTTCATGCGTAG
TAGACGAGCACCATGCTTCATGTGCGTGCACCGGGGGGAGACGGAACGTA
TGCGTTTCGCGTTCAAAGCACGCACACCGCCTCGGGTTGTTTTTTTGTTG
CTTATGTAATCCGTACGTTGAGAGAGGTGGGGTTGGGATGGAGTTACGTA
GGCAGTCCCTGTTGCCGCTATCAAGTTCGAGAAGCAGTCTTTTTATTATA
CAAGAAAGAACAAGTATCTCAGCTCAGCTCAGCTCCGTTCATTGTCCATC
CGGATCGGTGCGGTAGACGGCGTGACGTCATCTCCCCCCGTCTCCACCCG
CGGTGTGTCCGATAAGGGCATTCATGGTAAGAGGAGTGCGACGCAATCAG
CATACACACATACACACACATACATTTGCTAGCCTCGCATCTTTCCTTTT
TGCTCTAATATTAACTTATTCCTCTGTTCGTTTCCTTCGCCGCCAACGCC
AACATCTCGGTGGGTGGGGGTGGGGGGGGATGGAACCAAAATGCTCTCAC
TGCGTCCGTGACCTCGTGAGGTGCAGCTTCTGCAAGAGATCGAGTGGCCG
GCTGCACAACTGCCGCAGCAACCGCGGCAGGACGGCCCATGGGACAGCCA
CGTCCTGAACGCGCTGCTGTTGGGGATGACGCTGTTGACGGCGGTGGCGG
CATTCGGCGCCGTGCAGCACTTGGGCATTTGGTGGCGCTATCGGCGTCAC
CCCCACCAGGAGCAGCAAGAAGCGAGGCCTGAAGTTGATGCGT
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Coding sequence (CDS) from alignment at H-elongata_contig13623:4643..6635+

>mRNA_H-elongata_contig13623.2561.1 ID=mRNA_H-elongata_contig13623.2561.1|Name=mRNA_H-elongata_contig13623.2561.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1830bp|location=Sequence derived from alignment at H-elongata_contig13623:4643..6635+ (Himanthalia elongata Himel1 dioecious)
GTTGGCGGCGAGGTCCTCAAGGGCGCTACTCCTTCTCGAGATGGGTGTCA
TTTGAAGCCCCCAAGTAGAACACAACGGGCACCGTTTCCGCTTCTGTCTC
GACTTGAAACGATTGATGATGACCGCGGCAGCAGCGACGACACAACCTCG
GAGGAACCTAGCGTGGCACACGATGGAAAATTTTCCAGCGAGCGTCACAG
CTGCGATGAGAAGGATGCTTCTTGTGGACCGAACGCCATCGGCGATGTCA
ACCCCGACCTCTCTTCTGGTGCTCACGTGTCGAACGTGAAGGTCGACGGC
GTTGGAAGCAAGGGGCTAGTTGCGGCGTGTGGACTACGTGCAAGCCTTGT
GGATGGGGCGTATAGCGCTGTTCCTGCGGGCGCACCGGCCGGTGTACTGC
GATCGGCGGTGCTCATGTACGACGCCGCGGAGCTAGGGGGGCGATTACTA
GCCGCCAGGTTGAAGGCCGCCGAAGCGGGCCAATCGCGTGACGGTGATGG
TGACGGCGTAGGTTGGGTGGGGTTGGCGGCGGCCTTGGAGTTCGAGGGTC
TTTCGGGCACGGTTGGCGGCGAGGTCCTCAAGGGCGCTACTCCTTCTCGA
GATGGGTGTCATTTGAAGCCCCCAAGTAGAACACAACGGGCACCGTTTCC
GCTTCTGTCTCGACTTGAAACGATTGATGATGACCGCGGCAGCAGCGACG
ACACAACCTCGGAGGAACCTAGCGTGGCACACGATGGAAAATTTTCCAGC
GAGCGTCACAGCTGCGATGAGAAGGATGCTTCTTGTGGACCGAACGCCAT
CGGCGATGTCAACCCCGACCTCTCTTCTGGTGCTCACGTGTCGAACGTGA
AGGTCGACGGCGTTGGAAGCAAGGGGCTAGTTGCGGCGTGTGGACTACGT
GCAAGCCTTGTGGATGGGGCGTATAGCGCTGTTCCTGCGGGCGCACCGGC
CGGTGTACTGCGATCGGCGGTGCTCATGTACGACGCCGCGGAGCTAGGGG
GGCGATTACTAGCCGCCAGGTTGAAGGCCGCCGAAGCGGGCCAATCGCGT
GACGGTGATGGTGACGGCGTAGGTTGGGTGGGGTTGGCGGCGGCCTTGGA
GTTCGAGGGTCTTTCGGGCACGGTCAAAATGGACAGCAGCGGTAACCGTC
GCGGGATGGACGTCTCCTTCTGGTTGGTGGAAGGCAAAGCAGTGGACGGA
TGCTGGTACACGTCGGGGAAGGAGGCTGCTCGTTTCACGCAAGACACCGG
CGAAGTACAGGTCAAAATGGACAGCAGCGGTAACCGTCGCGGGATGGACG
TCTCCTTCTGGTTGGTGGAAGGCAAAGCAGTGGACGGATGCTGGTACACG
TCGGGGAAGGAGGCTGCTCGTTTCACGCAAGACACCGGCGAAGTACAGCT
TCTGCAAGAGATCGAGTGGCCGGCTGCACAACTGCCGCAGCAACCGCGGC
AGGACGGCCCATGGGACAGCCACGTCCTGAACGCGCTGCTGTTGGGGATG
ACGCTGTTGACGGCGGTGGCGGCATTCGGCGCCGTGCAGCACTTGGGCAT
TTGGTGGCGCTATCGGCGTCACCCCCACCAGGAGCAGCAAGAAGCGAGGC
CTGAAGTTGATGCGCTTCTGCAAGAGATCGAGTGGCCGGCTGCACAACTG
CCGCAGCAACCGCGGCAGGACGGCCCATGGGACAGCCACGTCCTGAACGC
GCTGCTGTTGGGGATGACGCTGTTGACGGCGGTGGCGGCATTCGGCGCCG
TGCAGCACTTGGGCATTTGGTGGCGCTATCGGCGTCACCCCCACCAGGAG
CAGCAAGAAGCGAGGCCTGAAGTTGATGCG
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