mRNA_H-elongata_contig13620.2558.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13620.2558.1
Unique NamemRNA_H-elongata_contig13620.2558.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 299 bits (766), Expect = 7.700e-97
Identity = 150/265 (56.60%), Postives = 184/265 (69.43%), Query Frame = 1
Query:    1 VRRERRPWGAYLKPMLQDNTFKGRFRMEHDDFNALVKMLRRDLERNTTMGYLRNRTVPVEYQVALTLRWLAGAWIHEGMDGHVITRSTAYAIAHRVIDAINACSGLDCKCPNNDDEVVEAVKTFKERSAYGVVDKCIEAMDGLFVRMKRPTQNETAEPNISYSGHKRGFGMNVQGVCNAQYKTIDLILNCPGSQNDRTAFKFFDFHRLFDRLPEGYYILGDAEYPASDRVLVPDPGLDLLDSQDAYNYYQPQCRMAVEQTFVMLV 795
            VRRERR W  Y KPM+QD TF+ RFRM++ +F  L  MLR  LERN  MG LRN  +PVE+Q+A+ LR+LAG  + E MDG+VI RSTAYAI HRVIDAIN    LDC  P  +D  ++    ++ RS  GV+  C+ AMDGLFVRM +P+      P   YSGHK+GFGMN QGVCNA+Y+ I   +NCPGS NDRTAFK   F  +   LP G YI+GDA YPASD+VLVP PG  L  SQDAYN+YQ Q R+++EQ F ++V
Sbjct:   46 VRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGED-ALDQCGMYRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQGVCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPYPGTSLTRSQDAYNFYQSQARISIEQAFGIMV 309          
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 293 bits (750), Expect = 2.470e-94
Identity = 145/265 (54.72%), Postives = 187/265 (70.57%), Query Frame = 1
Query:    1 VRRERRPWGAYLKPMLQDNTFKGRFRMEHDDFNALVKMLRRDLERNTTMGYLRNRTVPVEYQVALTLRWLAGAWIHEGMDGHVITRSTAYAIAHRVIDAINACSGLDCKCPNNDDEVVEAVKTFKERSAYGVVDKCIEAMDGLFVRMKRPTQNETAEPNISYSGHKRGFGMNVQGVCNAQYKTIDLILNCPGSQNDRTAFKFFDFHRLFDRLPEGYYILGDAEYPASDRVLVPDPGLDLLDSQDAYNYYQPQCRMAVEQTFVMLV 795
            V RERR +  Y++PM++DNTF+ RFRM++ DF  L  +LR  L+R+  MG LRN  +PVE+Q+A+TLR+LAG  + E MD +VI +STAYAI HRVIDAIN    L+CK P  DD   +A + ++ RS  GV+ +C+ AMDGLFVR+  P     A P   YSGHK+ FGMN QG+CNA Y+ I   +NCPGSQNDRTAFK   F  L  ++P   +I+GDA YPAS+RVLVPDPG  L  SQDAYN+YQ Q R+++EQ F +LV
Sbjct:   50 VYRERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGDDAEAQA-ELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQGICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVPDPGTALTLSQDAYNFYQSQARISIEQAFGILV 313          
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 4.750e-87
Identity = 134/232 (57.76%), Postives = 168/232 (72.41%), Query Frame = 1
Query:  100 ALVKMLRRDLERNTTMGYLRNRTVPVEYQVALTLRWLAGAWIHEGMDGHVITRSTAYAIAHRVIDAINACSGLDCKCPNNDDEVVEAVKTFKERSAYGVVDKCIEAMDGLFVRMKRPTQNETAEPNISYSGHKRGFGMNVQGVCNAQYKTIDLILNCPGSQNDRTAFKFFDFHRLFDRLPEGYYILGDAEYPASDRVLVPDPGLDLLDSQDAYNYYQPQCRMAVEQTFVMLV 795
             LV  LR  L++N  MG LRN  +PVE QVA+TLRWLAG  I+E MDGHVI RSTAY +   VI+A+NAC  L+CK P  +D    A + F+ RS+  VV KC+ A DGLFVRM +P+  E AEPN+ Y+GHK+GFGMN Q VC+AQY+ +  ++NCPGSQNDRTAF F  F +L   LPEG++++GDA Y AS+RV+VP PG  L  SQDA NYY  QCRMA+EQT+ +LV
Sbjct:   72 VLVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGED-AARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV 302          
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 9.980e-76
Identity = 129/236 (54.66%), Postives = 159/236 (67.37%), Query Frame = 1
Query:    1 VRRERRPWGAYLKPMLQDNTFKGRFRMEHDDFNALVKMLRRDLERNTTMGYLRNRTVPVEYQVALTLRWLAGAWIHEGMDGHVITRSTAYAIAHRVIDAINACSGLDCKCPNNDDEVVEAVKTFKERSAYGVVDKCIEAMDGLFVRMKRPTQNETAEPNISYSGHKRGFGMNVQGVCNAQYKTIDLILNCPGSQNDRTAFKFFDFHRLFDRLPEGYYILGDAEYPASDRVLVPDPG 708
            V RERRP+  Y+KPMLQD+TF  RFRME+DDF  LV  LR  L++N   G LRN  +PVEYQVA+TLRWLAG  I+E MDGHVI RSTAY +   VI+A+NAC  L+CK P  +D + E        +   VV KC+ AMDGLFVRM +P+  E AEPN+ Y+GHK+GFGMN Q VC               SQNDRTAF F  F +L   LPEG++++G+A Y AS+RV+VP PG
Sbjct:   50 VARERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGED-LPEPPSFSATAALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ-VC---------------SQNDRTAFNFSGFDKLLAGLPEGHFVVGNAAYGASERVVVPFPG 268          
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 1.840e-61
Identity = 117/265 (44.15%), Postives = 148/265 (55.85%), Query Frame = 1
Query:    1 VRRERRPWGAYLKPMLQDNTFKGRFRMEHDDFNALVKMLRRDLERNTTMGYLRNRTVPVEYQVALTLRWLAGAWIHEGMDGHVITRSTAYAIAHRVIDAINACSGLDCKCPNNDDEVVEAVKTFKERSAYGVVDKCIEAMDGLFVRMKRPTQNETAEPNISYSGHKRGFGMNVQGVCNAQYKTIDLILNCPGSQNDRTAFKFFDFHRLFDRLPEGYYILGDAEYPASDRVLVPDPGLDLLDSQDAYNYYQPQCRMAVEQTFVMLV 795
            V RERRP+  ++KP+LQD+TF  RFRME+DDF  L+  LR  L +N  MG LR   +PVEYQ+A+TLRWLAG  I+E MDGHVI RSTAY +   VI+A+NAC  L+CK P                +   VV KC+ AMDGLFVRM +P+  E AEPN+ Y+GH++G                                                 ++GDA Y AS+RV+VP PG  L  SQDA N Y  Q RMA+EQT+ +LV
Sbjct:   50 VARERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPE---------------ARMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKGV------------------------------------------------VVGDAAYGASERVVVPFPGTSLSASQDACNNYVSQYRMAIEQTYGILV 251          
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 1.310e-59
Identity = 101/194 (52.06%), Postives = 124/194 (63.92%), Query Frame = 1
Query:  214 GAWIHEGMDGHVITRSTAYAIAHRVIDAINACSGLDCKCPNNDDEVVEAVKTFKERSAYGVVDKCIEAMDGLFVRMKRPTQNETAEPNISYSGHKRGFGMNVQGVCNAQYKTIDLILNCPGSQNDRTAFKFFDFHRLFDRLPEGYYILGDAEYPASDRVLVPDPGLDLLDSQDAYNYYQPQCRMAVEQTFVMLV 795
            G  I E MDG V  +STAYAI +RVIDAIN     DC  P  DD  ++    +++RS   V+  C+ AMDGLFV +  P+      P   YSGHK+GFGMN Q VCNA+YK     +NCPGS NDRTAFK   F R+   LP+G YI+GD  YPASD+VLVP PG  L  SQD+YN+YQ Q R+ +EQ F  +V
Sbjct:   51 GGSIFEVMDGCVFAKSTAYAIVYRVIDAINQTREFDCVWPEGDD-ALDQCGVYRQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQAVCNARYKITAWTMNCPGSCNDRTAFKHSGFERVLKTLPKGAYIVGDGAYPASDQVLVPYPGTTLTPSQDSYNFYQSQARIFIEQAFGNMV 243          
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 3.640e-59
Identity = 114/267 (42.70%), Postives = 139/267 (52.06%), Query Frame = 1
Query:    1 VRRERRPWGAYLKPMLQDNTFKGRFRMEHDDFNALVKMLRRDLERNTTMGYLRNRTVPVEYQVALTLRWLAGAWIHEGMDGHVITRSTAYAIAHRVIDAINACSGLDCKCPNNDDEVVEAVKTFKERSAYGVVDKCIEAMDGLFVRMKRPTQNETAEPNISYSGHKRGFGMNVQGVCNAQYKTIDLILNCPGSQNDRTAFKFFDFHRLFDRLPEGYYILGDAEYPASDRVLVPDPGLDLLDSQDAYNYYQPQCRMAVEQTFVMLVSI 801
            V R RRP+  Y+KPMLQD+TF  RFRME+DDF  LV  LR  L++N  MG LRN  +PVEYQVA+TLRWLAG   +E MDGHVI RSTAY                                                                                     VC+AQY+ +  ++NCPGSQNDRTAF F  F +L   LPEG++++GDA Y AS+RV+VP PG  L  SQDA NYY  QCRMA+EQT+ +LVS+
Sbjct:   50 VARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAY-----------------------------------------------------------------------------------HAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYMSQCRMAIEQTYGILVSV 233          
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 6.270e-51
Identity = 82/134 (61.19%), Postives = 102/134 (76.12%), Query Frame = 1
Query:  394 VVDKCIEAMDGLFVRMKRPTQNETAEPNISYSGHKRGFGMNVQGVCNAQYKTIDLILNCPGSQNDRTAFKFFDFHRLFDRLPEGYYILGDAEYPASDRVLVPDPGLDLLDSQDAYNYYQPQCRMAVEQTFVMLV 795
            VV KC+ AMDGLFVRM +P+  E AEPN+ Y+GHK GFGMN Q VC+AQY+ +   ++CPGSQNDRTAF F  F +L   LPEG++++GDA Y AS+RV+VP PG  L  SQDA NYY  QCRMA+EQT+ +LV
Sbjct:   17 VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKNGFGMNFQAVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV 150          
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 7.000e-43
Identity = 76/129 (58.91%), Postives = 93/129 (72.09%), Query Frame = 1
Query:  145 MGYLRNRTVPVEYQVALTLRWLAGAWIHEGMDGHVITRSTAYAIAHRVIDAINACSGLDCKCPNNDDEVVEAVKTFKERSAYGVVDKCIEAMDGLFVRMKRPTQNETAEPNISYSGHKRGFGMNVQGVC 531
            MG LRN  +PVE QVA+TLRWLAG  I+E MDGHVI RSTAY +   VI+A+NAC  L+CK P  +D    A + F+ RS+  VV KC+ AMD LFVRM +P+  E AEPN+ Y+GHK+GFGMN Q VC
Sbjct:    1 MGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGED-AARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ-VC 127          
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Match: A0A6H5JDE6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE6_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.560e-41
Identity = 92/261 (35.25%), Postives = 139/261 (53.26%), Query Frame = 1
Query:   22 WGAYLKPMLQDNTFKGRFRMEHDDFNALVKMLRRDLERNTTMGYLRNRT--VPVEYQVALTLRWLAGAWIHEGMDGHVITRSTAYAIAHRVIDAINACSGLD-CKCPNNDDEVVEAVKTFKERSAYGVVDKCIEAMDGLFVRMKRPTQNETAEPNISYSGHKRGFGMNVQGVCNAQYKTIDLILNCPGSQNDRTAFKFFDFHRLFDRLPEGYYILGDAEYPASDRVLVPDPGLDLLDSQDAYNYYQPQCRMAVEQTFVMLV 795
            W  ++K + +   F+  +RME   F+ L ++LR  LERN     LR  +  VPV+ ++A+ LR  AGA   +      I + + + +  +V+DAIN    +     P   +E     + ++ +S  G    C+ A DGLFV+   PT   T      +SGHK G+G+N+Q  C+A Y+   +     GS ND TA+   +      RLP G+Y+LGDA YP SD++L P PG  L   QDA+N+Y  Q R+ +EQ F +LV
Sbjct:   71 WEEHVKDVRRRKLFRRMYRMEEHSFDKLAELLRPILERNDYSARLRTSSGAVPVKIRLAVALRMFAGASYIDVALLFGIAKESVFNVMWQVVDAINNTPTVGPFFFPQTVEECTRQAREWEVKSTGGAFAGCVAAGDGLFVKTFAPTVVNTPNVLSFFSGHKNGYGLNIQATCDANYRFCSMSAIAAGSTNDWTAWNRSELSDSVARLPPGFYMLGDAAYPLSDQLLTPYPGKLLPRDQDAFNFYLSQLRVKIEQAFGILV 331          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3F2_9PHAE7.700e-9756.60DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE2.470e-9454.72DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE4.750e-8757.76DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5JJA1_9PHAE9.980e-7654.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS8_9PHAE1.840e-6144.15DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KCG0_9PHAE1.310e-5952.06DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K540_9PHAE3.640e-5942.70DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KNF2_9PHAE6.270e-5161.19DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KD49_9PHAE7.000e-4358.91Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDE6_9PHAE1.560e-4135.25DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13620contigH-elongata_contig13620:2127..3218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue5.7e-27
Seed eggNOG ortholog4792.ETI53028
EggNOG free text desc.nuclease activity
EggNOG OGs3QI3U@4776,KOG4585@1,KOG4585@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size825
Cds size825
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929808.7028563-CDS-H-elongata_contig13620:2126..26481622929808.7028563-CDS-H-elongata_contig13620:2126..2648Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13620 2127..2648 +
1691679165.6109023-CDS-H-elongata_contig13620:2126..26481691679165.6109023-CDS-H-elongata_contig13620:2126..2648Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13620 2127..2648 +
1622929808.7157-CDS-H-elongata_contig13620:2915..32181622929808.7157-CDS-H-elongata_contig13620:2915..3218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13620 2916..3218 +
1691679165.6198478-CDS-H-elongata_contig13620:2915..32181691679165.6198478-CDS-H-elongata_contig13620:2915..3218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13620 2916..3218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13620.2558.1prot_H-elongata_contig13620.2558.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13620 2127..3218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13620.2558.1

>prot_H-elongata_contig13620.2558.1 ID=prot_H-elongata_contig13620.2558.1|Name=mRNA_H-elongata_contig13620.2558.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=275bp
VRRERRPWGAYLKPMLQDNTFKGRFRMEHDDFNALVKMLRRDLERNTTMG
YLRNRTVPVEYQVALTLRWLAGAWIHEGMDGHVITRSTAYAIAHRVIDAI
NACSGLDCKCPNNDDEVVEAVKTFKERSAYGVVDKCIEAMDGLFVRMKRP
TQNETAEPNISYSGHKRGFGMNVQGVCNAQYKTIDLILNCPGSQNDRTAF
KFFDFHRLFDRLPEGYYILGDAEYPASDRVLVPDPGLDLLDSQDAYNYYQ
PQCRMAVEQTFVMLVSIDASMPLS*
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mRNA from alignment at H-elongata_contig13620:2127..3218+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13620.2558.1 ID=mRNA_H-elongata_contig13620.2558.1|Name=mRNA_H-elongata_contig13620.2558.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1092bp|location=Sequence derived from alignment at H-elongata_contig13620:2127..3218+ (Himanthalia elongata Himel1 dioecious)
GTCAGGCGTGAGCGGCGGCCCTGGGGCGCGTACTTGAAGCCCATGCTCCA AGACAACACTTTTAAGGGACGCTTCCGCATGGAGCATGACGACTTCAATG CTCTTGTGAAGATGCTTCGCAGGGATCTGGAGAGAAACACCACGATGGGA TATCTCCGCAATAGGACAGTGCCTGTGGAATATCAGGTGGCTCTGACCTT GCGCTGGCTGGCGGGTGCCTGGATACATGAGGGAATGGACGGGCATGTAA TCACAAGGAGTACGGCGTACGCTATAGCGCACCGTGTCATCGACGCAATC AACGCGTGTTCTGGCTTGGATTGCAAATGCCCCAACAACGACGACGAAGT CGTTGAAGCAGTGAAAACCTTCAAAGAACGCAGCGCGTACGGAGTTGTCG ACAAGTGTATTGAAGCCATGGACGGCTTGTTTGTCCGGATGAAGAGGCCC ACACAAAACGAGACCGCCGAGCCAAACATCTCCTACAGCGGCCACAAGAG AGGGTTTGGCATGAACGTTCAGGTGTTGAACTTAAAACATAGTAGTATCG CTCTTATGCAGCAGTAGCTAACCATGTACGTGTGTGCTTTTTCCCCAAAC ACTCACGACTCCCACCGAAGCAATGCTCCTATCGGAAGTGGACACATGAG GTTCCCGGGGGGCGTAGAATGATTTTGAGTAGTTATGTGGAGTCATGCCG TAAGAAGTGCTTCCGCTCAAAATAGTCTTTTGAGTCTTGTGAAATAATTT TTATCTATTCCGCTCTGACCAACTTGTGCGGGCCGACAGGGTGTGTGTAA TGCTCAGTACAAGACAATCGATTTGATCTTGAACTGCCCTGGGAGCCAGA ACGACCGGACAGCGTTCAAGTTCTTTGACTTCCACAGGCTTTTCGATCGG CTGCCTGAAGGCTACTACATTCTTGGTGACGCAGAGTATCCGGCTTCCGA CCGTGTGCTCGTACCAGACCCTGGCTTGGACCTGCTCGACAGCCAAGATG CATACAACTACTACCAGCCTCAGTGCAGGATGGCCGTCGAGCAGACCTTC GTAATGCTGGTGAGTATTGACGCCTCGATGCCTTTGTCGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig13620:2127..3218+

>mRNA_H-elongata_contig13620.2558.1 ID=mRNA_H-elongata_contig13620.2558.1|Name=mRNA_H-elongata_contig13620.2558.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1650bp|location=Sequence derived from alignment at H-elongata_contig13620:2127..3218+ (Himanthalia elongata Himel1 dioecious)
GTCAGGCGTGAGCGGCGGCCCTGGGGCGCGTACTTGAAGCCCATGCTCCA
AGACAACACTTTTAAGGGACGCTTCCGCATGGAGCATGACGACTTCAATG
CTCTTGTGAAGATGCTTCGCAGGGATCTGGAGAGAAACACCACGATGGGA
TATCTCCGCAATAGGACAGTGCCTGTGGAATATCAGGTGGCTCTGACCTT
GCGCTGGCTGGCGGGTGCCTGGATACATGAGGGAATGGACGGGCATGTAA
TCACAAGGAGTACGGCGTACGCTATAGCGCACCGTGTCATCGACGCAATC
AACGCGTGTTCTGGCTTGGATTGCAAATGCCCCAACAACGACGACGAAGT
CGTTGAAGCAGTGAAAACCTTCAAAGAACGCAGCGCGTACGGAGTTGTCG
ACAAGTGTATTGAAGCCATGGACGGCTTGTTTGTCCGGATGAAGAGGCCC
ACACAAAACGAGACCGCCGAGCCAAACATCTCCTACAGCGGCCACAAGAG
AGGGTTTGGCATGAACGTTCAGGTCAGGCGTGAGCGGCGGCCCTGGGGCG
CGTACTTGAAGCCCATGCTCCAAGACAACACTTTTAAGGGACGCTTCCGC
ATGGAGCATGACGACTTCAATGCTCTTGTGAAGATGCTTCGCAGGGATCT
GGAGAGAAACACCACGATGGGATATCTCCGCAATAGGACAGTGCCTGTGG
AATATCAGGTGGCTCTGACCTTGCGCTGGCTGGCGGGTGCCTGGATACAT
GAGGGAATGGACGGGCATGTAATCACAAGGAGTACGGCGTACGCTATAGC
GCACCGTGTCATCGACGCAATCAACGCGTGTTCTGGCTTGGATTGCAAAT
GCCCCAACAACGACGACGAAGTCGTTGAAGCAGTGAAAACCTTCAAAGAA
CGCAGCGCGTACGGAGTTGTCGACAAGTGTATTGAAGCCATGGACGGCTT
GTTTGTCCGGATGAAGAGGCCCACACAAAACGAGACCGCCGAGCCAAACA
TCTCCTACAGCGGCCACAAGAGAGGGTTTGGCATGAACGTTCAGGGTGTG
TGTAATGCTCAGTACAAGACAATCGATTTGATCTTGAACTGCCCTGGGAG
CCAGAACGACCGGACAGCGTTCAAGTTCTTTGACTTCCACAGGCTTTTCG
ATCGGCTGCCTGAAGGCTACTACATTCTTGGTGACGCAGAGTATCCGGCT
TCCGACCGTGTGCTCGTACCAGACCCTGGCTTGGACCTGCTCGACAGCCA
AGATGCATACAACTACTACCAGCCTCAGTGCAGGATGGCCGTCGAGCAGA
CCTTCGTAATGCTGGTGAGTATTGACGCCTCGATGCCTTTGTCGTAGGGT
GTGTGTAATGCTCAGTACAAGACAATCGATTTGATCTTGAACTGCCCTGG
GAGCCAGAACGACCGGACAGCGTTCAAGTTCTTTGACTTCCACAGGCTTT
TCGATCGGCTGCCTGAAGGCTACTACATTCTTGGTGACGCAGAGTATCCG
GCTTCCGACCGTGTGCTCGTACCAGACCCTGGCTTGGACCTGCTCGACAG
CCAAGATGCATACAACTACTACCAGCCTCAGTGCAGGATGGCCGTCGAGC
AGACCTTCGTAATGCTGGTGAGTATTGACGCCTCGATGCCTTTGTCGTAG
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