mRNA_H-elongata_contig13620.2558.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE) HSP 1 Score: 299 bits (766), Expect = 7.700e-97 Identity = 150/265 (56.60%), Postives = 184/265 (69.43%), Query Frame = 1
Query: 1 VRRERRPWGAYLKPMLQDNTFKGRFRMEHDDFNALVKMLRRDLERNTTMGYLRNRTVPVEYQVALTLRWLAGAWIHEGMDGHVITRSTAYAIAHRVIDAINACSGLDCKCPNNDDEVVEAVKTFKERSAYGVVDKCIEAMDGLFVRMKRPTQNETAEPNISYSGHKRGFGMNVQGVCNAQYKTIDLILNCPGSQNDRTAFKFFDFHRLFDRLPEGYYILGDAEYPASDRVLVPDPGLDLLDSQDAYNYYQPQCRMAVEQTFVMLV 795
VRRERR W Y KPM+QD TF+ RFRM++ +F L MLR LERN MG LRN +PVE+Q+A+ LR+LAG + E MDG+VI RSTAYAI HRVIDAIN LDC P +D ++ ++ RS GV+ C+ AMDGLFVRM +P+ P YSGHK+GFGMN QGVCNA+Y+ I +NCPGS NDRTAFK F + LP G YI+GDA YPASD+VLVP PG L SQDAYN+YQ Q R+++EQ F ++V
Sbjct: 46 VRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGED-ALDQCGMYRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQGVCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPYPGTSLTRSQDAYNFYQSQARISIEQAFGIMV 309
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE) HSP 1 Score: 293 bits (750), Expect = 2.470e-94 Identity = 145/265 (54.72%), Postives = 187/265 (70.57%), Query Frame = 1
Query: 1 VRRERRPWGAYLKPMLQDNTFKGRFRMEHDDFNALVKMLRRDLERNTTMGYLRNRTVPVEYQVALTLRWLAGAWIHEGMDGHVITRSTAYAIAHRVIDAINACSGLDCKCPNNDDEVVEAVKTFKERSAYGVVDKCIEAMDGLFVRMKRPTQNETAEPNISYSGHKRGFGMNVQGVCNAQYKTIDLILNCPGSQNDRTAFKFFDFHRLFDRLPEGYYILGDAEYPASDRVLVPDPGLDLLDSQDAYNYYQPQCRMAVEQTFVMLV 795
V RERR + Y++PM++DNTF+ RFRM++ DF L +LR L+R+ MG LRN +PVE+Q+A+TLR+LAG + E MD +VI +STAYAI HRVIDAIN L+CK P DD +A + ++ RS GV+ +C+ AMDGLFVR+ P A P YSGHK+ FGMN QG+CNA Y+ I +NCPGSQNDRTAFK F L ++P +I+GDA YPAS+RVLVPDPG L SQDAYN+YQ Q R+++EQ F +LV
Sbjct: 50 VYRERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGDDAEAQA-ELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQGICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVPDPGTALTLSQDAYNFYQSQARISIEQAFGILV 313
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE) HSP 1 Score: 274 bits (701), Expect = 4.750e-87 Identity = 134/232 (57.76%), Postives = 168/232 (72.41%), Query Frame = 1
Query: 100 ALVKMLRRDLERNTTMGYLRNRTVPVEYQVALTLRWLAGAWIHEGMDGHVITRSTAYAIAHRVIDAINACSGLDCKCPNNDDEVVEAVKTFKERSAYGVVDKCIEAMDGLFVRMKRPTQNETAEPNISYSGHKRGFGMNVQGVCNAQYKTIDLILNCPGSQNDRTAFKFFDFHRLFDRLPEGYYILGDAEYPASDRVLVPDPGLDLLDSQDAYNYYQPQCRMAVEQTFVMLV 795
LV LR L++N MG LRN +PVE QVA+TLRWLAG I+E MDGHVI RSTAY + VI+A+NAC L+CK P +D A + F+ RS+ VV KC+ A DGLFVRM +P+ E AEPN+ Y+GHK+GFGMN Q VC+AQY+ + ++NCPGSQNDRTAF F F +L LPEG++++GDA Y AS+RV+VP PG L SQDA NYY QCRMA+EQT+ +LV
Sbjct: 72 VLVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGED-AARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV 302
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE) HSP 1 Score: 244 bits (624), Expect = 9.980e-76 Identity = 129/236 (54.66%), Postives = 159/236 (67.37%), Query Frame = 1
Query: 1 VRRERRPWGAYLKPMLQDNTFKGRFRMEHDDFNALVKMLRRDLERNTTMGYLRNRTVPVEYQVALTLRWLAGAWIHEGMDGHVITRSTAYAIAHRVIDAINACSGLDCKCPNNDDEVVEAVKTFKERSAYGVVDKCIEAMDGLFVRMKRPTQNETAEPNISYSGHKRGFGMNVQGVCNAQYKTIDLILNCPGSQNDRTAFKFFDFHRLFDRLPEGYYILGDAEYPASDRVLVPDPG 708
V RERRP+ Y+KPMLQD+TF RFRME+DDF LV LR L++N G LRN +PVEYQVA+TLRWLAG I+E MDGHVI RSTAY + VI+A+NAC L+CK P +D + E + VV KC+ AMDGLFVRM +P+ E AEPN+ Y+GHK+GFGMN Q VC SQNDRTAF F F +L LPEG++++G+A Y AS+RV+VP PG
Sbjct: 50 VARERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGED-LPEPPSFSATAALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ-VC---------------SQNDRTAFNFSGFDKLLAGLPEGHFVVGNAAYGASERVVVPFPG 268
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE) HSP 1 Score: 206 bits (524), Expect = 1.840e-61 Identity = 117/265 (44.15%), Postives = 148/265 (55.85%), Query Frame = 1
Query: 1 VRRERRPWGAYLKPMLQDNTFKGRFRMEHDDFNALVKMLRRDLERNTTMGYLRNRTVPVEYQVALTLRWLAGAWIHEGMDGHVITRSTAYAIAHRVIDAINACSGLDCKCPNNDDEVVEAVKTFKERSAYGVVDKCIEAMDGLFVRMKRPTQNETAEPNISYSGHKRGFGMNVQGVCNAQYKTIDLILNCPGSQNDRTAFKFFDFHRLFDRLPEGYYILGDAEYPASDRVLVPDPGLDLLDSQDAYNYYQPQCRMAVEQTFVMLV 795
V RERRP+ ++KP+LQD+TF RFRME+DDF L+ LR L +N MG LR +PVEYQ+A+TLRWLAG I+E MDGHVI RSTAY + VI+A+NAC L+CK P + VV KC+ AMDGLFVRM +P+ E AEPN+ Y+GH++G ++GDA Y AS+RV+VP PG L SQDA N Y Q RMA+EQT+ +LV
Sbjct: 50 VARERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPE---------------ARMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKGV------------------------------------------------VVGDAAYGASERVVVPFPGTSLSASQDACNNYVSQYRMAIEQTYGILV 251
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE) HSP 1 Score: 202 bits (513), Expect = 1.310e-59 Identity = 101/194 (52.06%), Postives = 124/194 (63.92%), Query Frame = 1
Query: 214 GAWIHEGMDGHVITRSTAYAIAHRVIDAINACSGLDCKCPNNDDEVVEAVKTFKERSAYGVVDKCIEAMDGLFVRMKRPTQNETAEPNISYSGHKRGFGMNVQGVCNAQYKTIDLILNCPGSQNDRTAFKFFDFHRLFDRLPEGYYILGDAEYPASDRVLVPDPGLDLLDSQDAYNYYQPQCRMAVEQTFVMLV 795
G I E MDG V +STAYAI +RVIDAIN DC P DD ++ +++RS V+ C+ AMDGLFV + P+ P YSGHK+GFGMN Q VCNA+YK +NCPGS NDRTAFK F R+ LP+G YI+GD YPASD+VLVP PG L SQD+YN+YQ Q R+ +EQ F +V
Sbjct: 51 GGSIFEVMDGCVFAKSTAYAIVYRVIDAINQTREFDCVWPEGDD-ALDQCGVYRQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQAVCNARYKITAWTMNCPGSCNDRTAFKHSGFERVLKTLPKGAYIVGDGAYPASDQVLVPYPGTTLTPSQDSYNFYQSQARIFIEQAFGNMV 243
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE) HSP 1 Score: 200 bits (509), Expect = 3.640e-59 Identity = 114/267 (42.70%), Postives = 139/267 (52.06%), Query Frame = 1
Query: 1 VRRERRPWGAYLKPMLQDNTFKGRFRMEHDDFNALVKMLRRDLERNTTMGYLRNRTVPVEYQVALTLRWLAGAWIHEGMDGHVITRSTAYAIAHRVIDAINACSGLDCKCPNNDDEVVEAVKTFKERSAYGVVDKCIEAMDGLFVRMKRPTQNETAEPNISYSGHKRGFGMNVQGVCNAQYKTIDLILNCPGSQNDRTAFKFFDFHRLFDRLPEGYYILGDAEYPASDRVLVPDPGLDLLDSQDAYNYYQPQCRMAVEQTFVMLVSI 801
V R RRP+ Y+KPMLQD+TF RFRME+DDF LV LR L++N MG LRN +PVEYQVA+TLRWLAG +E MDGHVI RSTAY VC+AQY+ + ++NCPGSQNDRTAF F F +L LPEG++++GDA Y AS+RV+VP PG L SQDA NYY QCRMA+EQT+ +LVS+
Sbjct: 50 VARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAY-----------------------------------------------------------------------------------HAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYMSQCRMAIEQTYGILVSV 233
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE) HSP 1 Score: 177 bits (448), Expect = 6.270e-51 Identity = 82/134 (61.19%), Postives = 102/134 (76.12%), Query Frame = 1
Query: 394 VVDKCIEAMDGLFVRMKRPTQNETAEPNISYSGHKRGFGMNVQGVCNAQYKTIDLILNCPGSQNDRTAFKFFDFHRLFDRLPEGYYILGDAEYPASDRVLVPDPGLDLLDSQDAYNYYQPQCRMAVEQTFVMLV 795
VV KC+ AMDGLFVRM +P+ E AEPN+ Y+GHK GFGMN Q VC+AQY+ + ++CPGSQNDRTAF F F +L LPEG++++GDA Y AS+RV+VP PG L SQDA NYY QCRMA+EQT+ +LV
Sbjct: 17 VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKNGFGMNFQAVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV 150
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE) HSP 1 Score: 152 bits (383), Expect = 7.000e-43 Identity = 76/129 (58.91%), Postives = 93/129 (72.09%), Query Frame = 1
Query: 145 MGYLRNRTVPVEYQVALTLRWLAGAWIHEGMDGHVITRSTAYAIAHRVIDAINACSGLDCKCPNNDDEVVEAVKTFKERSAYGVVDKCIEAMDGLFVRMKRPTQNETAEPNISYSGHKRGFGMNVQGVC 531
MG LRN +PVE QVA+TLRWLAG I+E MDGHVI RSTAY + VI+A+NAC L+CK P +D A + F+ RS+ VV KC+ AMD LFVRM +P+ E AEPN+ Y+GHK+GFGMN Q VC
Sbjct: 1 MGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGED-AARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ-VC 127
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Match: A0A6H5JDE6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE6_9PHAE) HSP 1 Score: 157 bits (397), Expect = 1.560e-41 Identity = 92/261 (35.25%), Postives = 139/261 (53.26%), Query Frame = 1
Query: 22 WGAYLKPMLQDNTFKGRFRMEHDDFNALVKMLRRDLERNTTMGYLRNRT--VPVEYQVALTLRWLAGAWIHEGMDGHVITRSTAYAIAHRVIDAINACSGLD-CKCPNNDDEVVEAVKTFKERSAYGVVDKCIEAMDGLFVRMKRPTQNETAEPNISYSGHKRGFGMNVQGVCNAQYKTIDLILNCPGSQNDRTAFKFFDFHRLFDRLPEGYYILGDAEYPASDRVLVPDPGLDLLDSQDAYNYYQPQCRMAVEQTFVMLV 795
W ++K + + F+ +RME F+ L ++LR LERN LR + VPV+ ++A+ LR AGA + I + + + + +V+DAIN + P +E + ++ +S G C+ A DGLFV+ PT T +SGHK G+G+N+Q C+A Y+ + GS ND TA+ + RLP G+Y+LGDA YP SD++L P PG L QDA+N+Y Q R+ +EQ F +LV
Sbjct: 71 WEEHVKDVRRRKLFRRMYRMEEHSFDKLAELLRPILERNDYSARLRTSSGAVPVKIRLAVALRMFAGASYIDVALLFGIAKESVFNVMWQVVDAINNTPTVGPFFFPQTVEECTRQAREWEVKSTGGAFAGCVAAGDGLFVKTFAPTVVNTPNVLSFFSGHKNGYGLNIQATCDANYRFCSMSAIAAGSTNDWTAWNRSELSDSVARLPPGFYMLGDAAYPLSDQLLTPYPGKLLPRDQDAFNFYLSQLRVKIEQAFGILV 331 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13620.2558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13620.2558.1 >prot_H-elongata_contig13620.2558.1 ID=prot_H-elongata_contig13620.2558.1|Name=mRNA_H-elongata_contig13620.2558.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=275bp VRRERRPWGAYLKPMLQDNTFKGRFRMEHDDFNALVKMLRRDLERNTTMGback to top mRNA from alignment at H-elongata_contig13620:2127..3218+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13620.2558.1 ID=mRNA_H-elongata_contig13620.2558.1|Name=mRNA_H-elongata_contig13620.2558.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1092bp|location=Sequence derived from alignment at H-elongata_contig13620:2127..3218+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13620:2127..3218+ >mRNA_H-elongata_contig13620.2558.1 ID=mRNA_H-elongata_contig13620.2558.1|Name=mRNA_H-elongata_contig13620.2558.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1650bp|location=Sequence derived from alignment at H-elongata_contig13620:2127..3218+ (Himanthalia elongata Himel1 dioecious)back to top |