mRNA_H-elongata_contig136106.2554.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136106.2554.1
Unique NamemRNA_H-elongata_contig136106.2554.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig136106.2554.1 vs. uniprot
Match: D7FSY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY0_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.620e-20
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 VRVWELQRGYGNQ-VTGVPKAQMNHDAPVLCTDFSSDGTTIFSGGASKQV 147
            VRVWELQRGYG Q +T VPKAQ+NHDAPVLCTDFS+DGT +FSGGASKQV
Sbjct:   44 VRVWELQRGYGTQPITAVPKAQINHDAPVLCTDFSADGTKVFSGGASKQV 93
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BLAST of mRNA_H-elongata_contig136106.2554.1 vs. uniprot
Match: B9SMV1_RICCO (Plant poly(A)+ RNA export protein, putative n=5 Tax=Euphorbiaceae TaxID=3977 RepID=B9SMV1_RICCO)

HSP 1 Score: 65.1 bits (157), Expect = 7.280e-11
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 VRVWELQRGYGNQVTGVPKAQMNHDAPVLCTDFSSDGTTIFSGGASKQVRAIPII 165
            VR WE+ R  G  +  VPK Q+ HD PVLC+ +  DGTT+FSGG  KQV+  P++
Sbjct:   49 VRCWEITRN-GTTIGSVPKTQITHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLL 102
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BLAST of mRNA_H-elongata_contig136106.2554.1 vs. uniprot
Match: K3XAP5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAP5_GLOUD)

HSP 1 Score: 63.5 bits (153), Expect = 2.590e-10
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 VRVWELQRGYGNQVTGVPKAQMNHDAPVLCTDFSSDGTTIFSGGASKQVR 150
            VR WE+Q+  G Q   VPKAQ++HD PVLCT FS DG+T+FSG   K  +
Sbjct:   54 VRCWEVQQ-QGTQFNAVPKAQISHDGPVLCTAFSGDGSTVFSGSCDKTAK 102
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BLAST of mRNA_H-elongata_contig136106.2554.1 vs. uniprot
Match: A0A8K1C843_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C843_PYTOL)

HSP 1 Score: 63.2 bits (152), Expect = 3.940e-10
Identity = 28/50 (56.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    1 VRVWELQRGYGNQVTGVPKAQMNHDAPVLCTDFSSDGTTIFSGGASKQVR 150
            VR WE+Q+  G     VPKAQ+ HD PVLCT FS DGTT+FSG   K  +
Sbjct:  427 VRCWEVQQ-QGTAFNAVPKAQITHDGPVLCTSFSGDGTTVFSGSCDKTAK 475
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BLAST of mRNA_H-elongata_contig136106.2554.1 vs. uniprot
Match: F0WRC9_9STRA (WD domaincontaining protein putative n=2 Tax=Albugo TaxID=65356 RepID=F0WRC9_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.830e-10
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    1 VRVWELQRGYGNQVTGVPKAQMNHDAPVLCTDFSSDGTTIFSGGASKQVR 150
            VR W++Q   G Q   VPKAQ+ H+ PVLCT FS DGTT+FSG   K  +
Sbjct:   52 VRCWDVQHA-GTQFNAVPKAQITHEGPVLCTSFSGDGTTVFSGSCDKTAK 100
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BLAST of mRNA_H-elongata_contig136106.2554.1 vs. uniprot
Match: A0A2D4CJX3_PYTIN (WD domain-containing protein, putative (Fragment) n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CJX3_PYTIN)

HSP 1 Score: 61.6 bits (148), Expect = 1.220e-9
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 VRVWELQRGYGNQVTGVPKAQMNHDAPVLCTDFSSDGTTIFSGGASKQVR 150
            VR WE+Q+  G Q   VPKAQ++H APVLCT FS DG+++FSG   K  +
Sbjct:   40 VRCWEVQQS-GTQFNAVPKAQISHSAPVLCTAFSGDGSSVFSGSCDKTAK 88
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BLAST of mRNA_H-elongata_contig136106.2554.1 vs. uniprot
Match: A0A162B2F9_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A162B2F9_DAUCS)

HSP 1 Score: 61.6 bits (148), Expect = 1.260e-9
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 VRVWELQRGYGNQVTGVPKAQMNHDAPVLCTDFSSDGTTIFSGGASKQVR 150
            VR WE+ R  GN +  VPKAQ++H+ P LC+ +  DGTT+F+GG  KQV+
Sbjct:   45 VRCWEVMRN-GNNLGTVPKAQISHEQPALCSTWKDDGTTVFTGGCDKQVK 93
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BLAST of mRNA_H-elongata_contig136106.2554.1 vs. uniprot
Match: A0A6A4ZPT9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZPT9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.760e-9
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 VRVWELQRGYGNQVTGVPKAQMNHDAPVLCTDFSSDGTTIFSGGASK 141
            VR WE+Q   G Q   V +AQ +H APVLCT FS+DGTT+FSG   K
Sbjct:   53 VRCWEVQH-QGTQFQAVARAQFSHKAPVLCTAFSADGTTVFSGSCDK 98
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BLAST of mRNA_H-elongata_contig136106.2554.1 vs. uniprot
Match: A0A5D6XL84_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL84_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.350e-9
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 VRVWELQRGYGNQVTGVPKAQMNHDAPVLCTDFSSDGTTIFSGGASKQVR 150
            VR WE+Q+  G Q   VPKAQ+ HD PVLCT FS+DG+ +FSG   K  +
Sbjct:   52 VRCWEVQQ-QGAQFNAVPKAQIAHDGPVLCTAFSADGSAVFSGSCDKTAK 100
[Close]
BLAST of mRNA_H-elongata_contig136106.2554.1 vs. uniprot
Match: H3G7H3_PHYRM (Uncharacterized protein n=30 Tax=Peronosporaceae TaxID=4777 RepID=H3G7H3_PHYRM)

HSP 1 Score: 59.7 bits (143), Expect = 6.120e-9
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 VRVWELQRGYGNQVTGVPKAQMNHDAPVLCTDFSSDGTTIFSGGASKQVR 150
            VR WE+Q+  G Q   V KAQ++HD PVLCT FS DG+T+FSG   K  +
Sbjct:   49 VRCWEVQQ-QGAQFNAVAKAQISHDGPVLCTAFSGDGSTVFSGSCDKTAK 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136106.2554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSY0_ECTSI1.620e-2084.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
B9SMV1_RICCO7.280e-1150.91Plant poly(A)+ RNA export protein, putative n=5 Ta... [more]
K3XAP5_GLOUD2.590e-1056.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1C843_PYTOL3.940e-1056.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0WRC9_9STRA4.830e-1054.00WD domaincontaining protein putative n=2 Tax=Albug... [more]
A0A2D4CJX3_PYTIN1.220e-954.00WD domain-containing protein, putative (Fragment) ... [more]
A0A162B2F9_DAUCS1.260e-952.00Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
A0A6A4ZPT9_9STRA3.760e-957.45Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A5D6XL84_9STRA4.350e-954.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
H3G7H3_PHYRM6.120e-954.00Uncharacterized protein n=30 Tax=Peronosporaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136106contigH-elongata_contig136106:471..653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog2880.D7FSY0
Preferred nameRAE1
KEGG koko:K14298
KEGG TC1.I.1
KEGG Pathwayko03013,ko05164,map03013,map05164
KEGG ModuleM00427
GOsGO:0000003,GO:0000054,GO:0000151,GO:0000278,GO:0000280,GO:0000922,GO:0000972,GO:0000973,GO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005739,GO:0005819,GO:0005829,GO:0005856,GO:0005929,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0007049,GO:0007127,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0007346,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008582,GO:0009893,GO:0009894,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010506,GO:0010564,GO:0010604,GO:0010628,GO:0010793,GO:0012505,GO:0014070,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0015931,GO:0016006,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016973,GO:0017038,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022613,GO:0031081,GO:0031224,GO:0031323,GO:0031329,GO:0031461,GO:0031503,GO:0031514,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032182,GO:0032239,GO:0032386,GO:0032501,GO:0032504,GO:0032879,GO:0032880,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0033750,GO:0034504,GO:0034613,GO:0034629,GO:0036126,GO:0040008,GO:0042221,GO:0042254,GO:0042886,GO:0042995,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0045184,GO:0045886,GO:0045926,GO:0046822,GO:0046825,GO:0046831,GO:0046907,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048638,GO:0048640,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051028,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051239,GO:0051241,GO:0051276,GO:0051321,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051664,GO:0051668,GO:0051704,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0051963,GO:0051964,GO:0060236,GO:0060255,GO:0060341,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070507,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071407,GO:0071426,GO:0071427,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072686,GO:0080008,GO:0080134,GO:0080135,GO:0090087,GO:0090224,GO:0097159,GO:0097223,GO:0097431,GO:0097729,GO:0120025,GO:0140013,GO:1900034,GO:1901363,GO:1901987,GO:1901990,GO:1902494,GO:1902806,GO:1903046,GO:1903827,GO:1904396,GO:1904397,GO:1905809,GO:1990234,GO:2000026,GO:2000045,GO:2000197,GO:2000728
EggNOG free text desc.transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
EggNOG OGsKOG0647@1,KOG0647@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-27_006770.1
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929808.4610188-CDS-H-elongata_contig136106:470..6531622929808.4610188-CDS-H-elongata_contig136106:470..653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136106 471..653 -
1691679165.5023606-CDS-H-elongata_contig136106:470..6531691679165.5023606-CDS-H-elongata_contig136106:470..653Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136106 471..653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136106.2554.1prot_H-elongata_contig136106.2554.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136106 471..653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136106.2554.1

>prot_H-elongata_contig136106.2554.1 ID=prot_H-elongata_contig136106.2554.1|Name=mRNA_H-elongata_contig136106.2554.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
VRVWELQRGYGNQVTGVPKAQMNHDAPVLCTDFSSDGTTIFSGGASKQVR
AIPIIERSAL*
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mRNA from alignment at H-elongata_contig136106:471..653-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136106.2554.1 ID=mRNA_H-elongata_contig136106.2554.1|Name=mRNA_H-elongata_contig136106.2554.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig136106:471..653- (Himanthalia elongata Himel1 dioecious)
GTTCGTGTATGGGAACTGCAGCGTGGTTACGGTAACCAGGTGACGGGTGT
CCCCAAAGCCCAGATGAACCACGACGCTCCCGTGCTGTGCACCGACTTCT
CTTCGGACGGGACCACGATTTTTTCTGGGGGAGCCAGCAAGCAGGTCAGA
GCGATACCGATAATCGAACGAAGTGCCTTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig136106:471..653-

>mRNA_H-elongata_contig136106.2554.1 ID=mRNA_H-elongata_contig136106.2554.1|Name=mRNA_H-elongata_contig136106.2554.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig136106:471..653- (Himanthalia elongata Himel1 dioecious)
GTTCGTGTATGGGAACTGCAGCGTGGTTACGGTAACCAGGTGACGGGTGT
CCCCAAAGCCCAGATGAACCACGACGCTCCCGTGCTGTGCACCGACTTCT
CTTCGGACGGGACCACGATTTTTTCTGGGGGAGCCAGCAAGCAGGTCAGA
GCGATACCGATAATCGAACGAAGTGCCTTGTAAGTTCGTGTATGGGAACT
GCAGCGTGGTTACGGTAACCAGGTGACGGGTGTCCCCAAAGCCCAGATGA
ACCACGACGCTCCCGTGCTGTGCACCGACTTCTCTTCGGACGGGACCACG
ATTTTTTCTGGGGGAGCCAGCAAGCAGGTCAGAGCGATACCGATAATCGA
ACGAAGTGCCTTGTAA
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