mRNA_H-elongata_contig136028.2548.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136028.2548.1
Unique NamemRNA_H-elongata_contig136028.2548.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig136028.2548.1 vs. uniprot
Match: A0A7W1D403_9ACTN (MFS domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1D403_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 7.010e-8
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 PPIQNATSWAWATVIMAPGPFLGVLAMVILKMSPEASKMGNGKG 132
            P ++NA SW WA   +APGP LGVLAM+ L+  PEA+++  G+G
Sbjct:  194 PQLENALSWRWAFAFLAPGPALGVLAMLRLRSVPEAAQLAQGRG 237
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BLAST of mRNA_H-elongata_contig136028.2548.1 vs. uniprot
Match: A0A8B5XEA4_9CHLR (MFS transporter n=1 Tax=Sphaerobacteraceae bacterium TaxID=2099683 RepID=A0A8B5XEA4_9CHLR)

HSP 1 Score: 54.7 bits (130), Expect = 1.900e-7
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 PPIQNATSWAWATVIMAPGPFLGVLAMVILKMSPEASKMGNGKG 132
            PPI+NA  W WA   +A GPF+GV+AM++L+ SP+  K+  G G
Sbjct:  361 PPIENAVGWEWAFSFLAIGPFIGVVAMLMLRRSPDREKLAGGIG 404
[Close]
BLAST of mRNA_H-elongata_contig136028.2548.1 vs. uniprot
Match: A0A7V8WL58_9ACTN (MFS transporter n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V8WL58_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 4.870e-7
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 PPIQNATSWAWATVIMAPGPFLGVLAMVILKMSPEASKMGNGKG 132
            P ++NA +W WA   +APGP LGVLAM+ L+  PEA+ +  G+G
Sbjct:  366 PELENALTWRWAFAFLAPGPALGVLAMLRLRSLPEAAHLAQGRG 409
[Close]
BLAST of mRNA_H-elongata_contig136028.2548.1 vs. uniprot
Match: A0A7W1C931_9BACT (MFS transporter n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7W1C931_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 1.050e-6
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 PPIQNATSWAWATVIMAPGPFLGVLAMVILKMSPEASKMGNGKG 132
            P +Q A  W WA  I+APGP LGV+AM+ L+ +PEA+ +  G+G
Sbjct:  214 PLVQGAAGWWWAFAILAPGPALGVVAMLRLRQAPEAALIAGGRG 257
[Close]
BLAST of mRNA_H-elongata_contig136028.2548.1 vs. uniprot
Match: A0A2V7WF75_9BACT (MFS transporter n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7WF75_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 1.700e-6
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 PPIQNATSWAWATVIMAPGPFLGVLAMVILKMSPEASKMGNGK 129
            P + +A  W+WA V +APGPFLG+ AM+ L+  PEASK+  G+
Sbjct:  362 PLLVDAVGWSWAFVALAPGPFLGIAAMMRLRGLPEASKIAGGR 404
[Close]
BLAST of mRNA_H-elongata_contig136028.2548.1 vs. uniprot
Match: A0A7W1BET7_9BACT (MFS transporter n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A7W1BET7_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 1.710e-6
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 PPIQNATSWAWATVIMAPGPFLGVLAMVILKMSPEASKMGNGKG 132
            P +Q A  W WA  I+APGP LGV+AM+ L+ +PEA+ +  G+G
Sbjct:  366 PLVQGAAGWWWAFAILAPGPALGVVAMLRLQQAPEAALIAGGRG 409
[Close]
BLAST of mRNA_H-elongata_contig136028.2548.1 vs. uniprot
Match: A0A1E5XP73_9HYPH (MFS transporter n=1 Tax=Devosia insulae DS-56 TaxID=1116389 RepID=A0A1E5XP73_9HYPH)

HSP 1 Score: 49.7 bits (117), Expect = 1.120e-5
Identity = 19/43 (44.19%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 PPIQNATSWAWATVIMAPGPFLGVLAMVILKMSPEASKMGNGK 129
            P +  A  W WA  I+APGP LG++AM++L+  PEA ++  G+
Sbjct:  361 PMLAAAIGWQWAFAILAPGPLLGIIAMLLLRRLPEAERIAQGR 403
[Close]
BLAST of mRNA_H-elongata_contig136028.2548.1 vs. uniprot
Match: F8GXZ4_CUPNN (Major facilitator superfamily MFS_1 n=8 Tax=Burkholderiaceae TaxID=119060 RepID=F8GXZ4_CUPNN)

HSP 1 Score: 49.3 bits (116), Expect = 1.530e-5
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 PPIQNATSWAWATVIMAPGPFLGVLAMVILKMSPEASKMGNGKG 132
            P +  A  W WA V +APGP LGVLAM+ LK  PE++++  G G
Sbjct:  365 PLLAGAFGWRWAFVFLAPGPALGVLAMLRLKSLPESARLAGGIG 408
[Close]
BLAST of mRNA_H-elongata_contig136028.2548.1 vs. uniprot
Match: A0A2V7YID7_9BACT (MFS transporter n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7YID7_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 2.090e-5
Identity = 19/44 (43.18%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 PPIQNATSWAWATVIMAPGPFLGVLAMVILKMSPEASKMGNGKG 132
            P + +A  W++A   +APGPFLG++AM+ L+  PE++K+  G+G
Sbjct:  332 PLLVDAVGWSYAFAFLAPGPFLGIVAMMRLRSLPESAKIAGGRG 375
[Close]
BLAST of mRNA_H-elongata_contig136028.2548.1 vs. uniprot
Match: A0A7V9P754_9ACTN (MFS transporter n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9P754_9ACTN)

HSP 1 Score: 48.9 bits (115), Expect = 2.090e-5
Identity = 21/44 (47.73%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 PPIQNATSWAWATVIMAPGPFLGVLAMVILKMSPEASKMGNGKG 132
            P + +A  W +A   +APGP LGVLAM+ L+ SP+AS++  G+G
Sbjct:  359 PFLADAVGWRYAFAFLAPGPALGVLAMLRLRASPDASRIAGGRG 402
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136028.2548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A7W1D403_9ACTN7.010e-852.27MFS domain-containing protein n=1 Tax=Actinomyceti... [more]
A0A8B5XEA4_9CHLR1.900e-750.00MFS transporter n=1 Tax=Sphaerobacteraceae bacteri... [more]
A0A7V8WL58_9ACTN4.870e-750.00MFS transporter n=1 Tax=Actinomycetia bacterium Ta... [more]
A0A7W1C931_9BACT1.050e-650.00MFS transporter n=1 Tax=Gemmatimonadetes bacterium... [more]
A0A2V7WF75_9BACT1.700e-651.16MFS transporter n=1 Tax=Acidobacteria bacterium Ta... [more]
A0A7W1BET7_9BACT1.710e-650.00MFS transporter n=1 Tax=Gemmatimonadales bacterium... [more]
A0A1E5XP73_9HYPH1.120e-544.19MFS transporter n=1 Tax=Devosia insulae DS-56 TaxI... [more]
F8GXZ4_CUPNN1.530e-550.00Major facilitator superfamily MFS_1 n=8 Tax=Burkho... [more]
A0A2V7YID7_9BACT2.090e-543.18MFS transporter n=1 Tax=Acidobacteria bacterium Ta... [more]
A0A7V9P754_9ACTN2.090e-547.73MFS transporter n=1 Tax=Actinomycetia bacterium Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136028contigH-elongata_contig136028:1496..1630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size135
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929808.0497298-CDS-H-elongata_contig136028:1495..16301622929808.0497298-CDS-H-elongata_contig136028:1495..1630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136028 1496..1630 -
1691679165.3768325-CDS-H-elongata_contig136028:1495..16301691679165.3768325-CDS-H-elongata_contig136028:1495..1630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136028 1496..1630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136028.2548.1prot_H-elongata_contig136028.2548.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136028 1496..1630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136028.2548.1

>prot_H-elongata_contig136028.2548.1 ID=prot_H-elongata_contig136028.2548.1|Name=mRNA_H-elongata_contig136028.2548.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
PPIQNATSWAWATVIMAPGPFLGVLAMVILKMSPEASKMGNGKG*
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mRNA from alignment at H-elongata_contig136028:1496..1630-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136028.2548.1 ID=mRNA_H-elongata_contig136028.2548.1|Name=mRNA_H-elongata_contig136028.2548.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig136028:1496..1630- (Himanthalia elongata Himel1 dioecious)
CCTCCCATTCAGAACGCGACCTCGTGGGCGTGGGCGACGGTGATCATGGC
GCCTGGACCCTTCCTGGGCGTTCTGGCCATGGTGATCCTCAAGATGTCCC
CGGAAGCCTCAAAAATGGGTAACGGAAAGGGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig136028:1496..1630-

>mRNA_H-elongata_contig136028.2548.1 ID=mRNA_H-elongata_contig136028.2548.1|Name=mRNA_H-elongata_contig136028.2548.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig136028:1496..1630- (Himanthalia elongata Himel1 dioecious)
CCTCCCATTCAGAACGCGACCTCGTGGGCGTGGGCGACGGTGATCATGGC
GCCTGGACCCTTCCTGGGCGTTCTGGCCATGGTGATCCTCAAGATGTCCC
CGGAAGCCTCAAAAATGGGTAACGGAAAGGGCTAACCTCCCATTCAGAAC
GCGACCTCGTGGGCGTGGGCGACGGTGATCATGGCGCCTGGACCCTTCCT
GGGCGTTCTGGCCATGGTGATCCTCAAGATGTCCCCGGAAGCCTCAAAAA
TGGGTAACGGAAAGGGCTAA
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