mRNA_H-elongata_contig136027.2547.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig136027.2547.1 vs. uniprot
Match: D7G584_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G584_ECTSI) HSP 1 Score: 220 bits (560), Expect = 4.340e-64 Identity = 111/133 (83.46%), Postives = 125/133 (93.98%), Query Frame = 1
Query: 1 GSCIFLGSRALHVTRAVDRDEAGRLTVGAQKRKGHKDKRNIYLANEGLVLEDSAAAEGAAKLDMDKRAASRRDKKTKLKNPLFFVSPVRLSVRNLAQHVTDGQLKAMAAAAARAGIEAGRATPQDVRLYLEAQ 399
GSCI+LGSRALHVTRAVDR+EAGRLTVGAQKR GHKDKRN+YLA+EGLVLEDS AAEGAAK DM+KR +R+DKK+KLKNP+FFVSP RLSVRN+ +HVTDG+LK+MAAAAARAGI+AGRA PQDVRLYLEAQ
Sbjct: 633 GSCIYLGSRALHVTRAVDREEAGRLTVGAQKRVGHKDKRNLYLADEGLVLEDSGAAEGAAKSDMEKRVLARKDKKSKLKNPIFFVSPTRLSVRNIGRHVTDGKLKSMAAAAARAGIQAGRANPQDVRLYLEAQ 765
BLAST of mRNA_H-elongata_contig136027.2547.1 vs. uniprot
Match: A0A835ZCM5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCM5_9STRA) HSP 1 Score: 145 bits (367), Expect = 6.470e-38 Identity = 81/133 (60.90%), Postives = 99/133 (74.44%), Query Frame = 1
Query: 1 GSCIFLGSRALHVTRAVDRDEAGRLT-VGAQKRKGHKDKRNIYLANEGLVLEDSAAAEGAAKLDMDKRAASRRDKKTKLKNPLFFVSPVRLSVRNLAQHVTDGQLKAMAAAAARAGIEAGRATPQDVRLYLEA 396
G+ I+LG RALHV RAV+RDEA RL G + KDKRN+YLANEGL++ AA K DMDKRAA+R DKK KLKNPLFF+SP+RLSVRNL++ VTD L+ +AA AARAG+E RA+ +D+R LEA
Sbjct: 653 GNSIYLGGRALHVMRAVERDEAQRLGGKGPDGQSAKKDKRNLYLANEGLLIATEEAARETPKADMDKRAAARADKKQKLKNPLFFISPLRLSVRNLSRAVTDAALRKLAADAARAGLEQRRASAKDMRRQLEA 785
BLAST of mRNA_H-elongata_contig136027.2547.1 vs. uniprot
Match: A0A8K1CP94_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP94_PYTOL) HSP 1 Score: 105 bits (261), Expect = 1.230e-23 Identity = 62/129 (48.06%), Postives = 83/129 (64.34%), Query Frame = 1
Query: 1 GSCIFLGSRALHVTRAVDRDEAGRLTVGAQKRKGHKDKRNIYLANEGLVLEDSAAAE--GAAKLDMDKRAASRRDKKTKLKNPLFFVSPVRLSVRNLAQHVTDGQLKAMAAAAARAGIEAGRATPQDVR 381
G + L R L V+R+V++D+A RLT + +DKRN+YLA EG + + + E G KLD++KR + R+KK KLKNPL FVSPVRLSVRNLA V D QLK + AA GI+ G+ +DV+
Sbjct: 588 GDALMLDGRMLLVSRSVNKDDADRLTEANSADRKKRDKRNMYLAYEGTISVNKLSEEELGLPKLDIEKRRRAIREKKEKLKNPLIFVSPVRLSVRNLATSVDDKQLKQIFRDAAATGIKEGKVIMKDVK 716
BLAST of mRNA_H-elongata_contig136027.2547.1 vs. uniprot
Match: A0A2D4BNT5_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNT5_PYTIN) HSP 1 Score: 102 bits (253), Expect = 1.510e-22 Identity = 58/119 (48.74%), Postives = 79/119 (66.39%), Query Frame = 1
Query: 1 GSCIFLGSRALHVTRAVDRDEAGRLTVGAQKRKGHKDKRNIYLANEGLVLEDSAAAEGAA--KLDMDKRAASRRDKKTKLKNPLFFVSPVRLSVRNLAQHVTDGQLKAMAAAAARAGIE 351
G + L R + VTRAV RD+A RLT ++ KDKRN+YLA EG + + + E + K+D++KR + ++KK KLKNPL+FVSP+RLSVRNLA HV D QLK + AA G++
Sbjct: 1118 GDALMLDGRMIIVTRAVARDDAERLTESNSAQRKAKDKRNMYLAYEGTINVNKLSEEELSLPKMDIEKRRRAIKEKKEKLKNPLYFVSPLRLSVRNLASHVDDAQLKQLFREAAITGMQ 1236
BLAST of mRNA_H-elongata_contig136027.2547.1 vs. uniprot
Match: A0A1V9ZKF3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKF3_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.290e-21 Identity = 59/129 (45.74%), Postives = 84/129 (65.12%), Query Frame = 1
Query: 1 GSCIFLGSRALHVTRAVDRDEAGRLTVGAQKRKGHKDKRNIYLANEGLVLEDSAAAEGAA--KLDMDKRAASRRDKKTKLKNPLFFVSPVRLSVRNLAQHVTDGQLKAMAAAAARAGIEAGRATPQDVR 381
G I++ +R L VTRAV++D+A RL + KDKRN+YLA EG + + + E A K+D++KR + ++KK KLKNPLFF+SPVRLSVRNLA V + LK + A AG++A P++V+
Sbjct: 616 GDGIYVDNRLLSVTRAVNKDDATRLADENSATRKAKDKRNMYLAYEGTINVNKTSDEDLALPKMDIEKRRRAIKEKKEKLKNPLFFISPVRLSVRNLALGVDEKVLKTVFREGAIAGLKANLVDPKEVK 744
BLAST of mRNA_H-elongata_contig136027.2547.1 vs. uniprot
Match: K3WMW4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMW4_GLOUD) HSP 1 Score: 96.7 bits (239), Expect = 1.120e-20 Identity = 57/132 (43.18%), Postives = 80/132 (60.61%), Query Frame = 1
Query: 1 GSCIFLGSRALHVTRAVDRDEAGRLTVGAQKRKGHKDKRNIYLANEGLVLEDSAAAEGAA--KLDMDKRAASRRDKKTKLKNPLFFVSPVRLSVRNLAQHVTDGQLKAMAAAAARAGIEAGRATPQDVRLYL 390
G + L R L +TRAV +++A RLT + KDKRN+YLA EG + + + E K+D+DKR + R+KK KLKNP++FVSPVRLSVRN++ V D +LK + A AG+ +V+L L
Sbjct: 504 GDALMLDGRMLSLTRAVGKEDADRLTTENSNERKKKDKRNMYLAYEGTINVNKLSDEELMLPKMDIDKRRRAIREKKEKLKNPMYFVSPVRLSVRNISSSVDDKKLKEIFRDGAIAGLREKNVDRSEVKLEL 635
BLAST of mRNA_H-elongata_contig136027.2547.1 vs. uniprot
Match: A0A067CLD4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CLD4_SAPPC) HSP 1 Score: 94.0 bits (232), Expect = 9.910e-20 Identity = 56/129 (43.41%), Postives = 81/129 (62.79%), Query Frame = 1
Query: 1 GSCIFLGSRALHVTRAVDRDEAGRLTVGAQKRKGHKDKRNIYLANEGLVLEDSAAAEGAA--KLDMDKRAASRRDKKTKLKNPLFFVSPVRLSVRNLAQHVTDGQLKAMAAAAARAGIEAGRATPQDVR 381
G +++ +R L +TRAV++D+A RL + KDKRN+YLA EG + + A E K+D++KR + ++KK KLKNPLFF+SPVRLSVRNLA V + LK + A AG+ A ++V+
Sbjct: 633 GDGVYVDNRLLSITRAVNKDDATRLADENSATRKAKDKRNMYLAYEGTISVNKTADEDLELPKMDIEKRRRAIKEKKEKLKNPLFFISPVRLSVRNLALGVDEKILKTIFREGAIAGLRANLVDMKEVK 761
BLAST of mRNA_H-elongata_contig136027.2547.1 vs. uniprot
Match: A0A5D6Y1I0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1I0_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 9.930e-20 Identity = 58/132 (43.94%), Postives = 79/132 (59.85%), Query Frame = 1
Query: 1 GSCIFLGSRALHVTRAVDRDEAGRLTVGAQKRKGHKDKRNIYLANEGLVLEDSAAAEGAA--KLDMDKRAASRRDKKTKLKNPLFFVSPVRLSVRNLAQHVTDGQLKAMAAAAARAGIEAGRATPQDVRLYL 390
G + L R L +TRAV + +A RL + KDKRN+YLA EG + + +AE A +D++KR + R+KK KLKNPL+FVSPVRLSVRNL+ V D +LK + A AG+ G +V+ L
Sbjct: 621 GDALVLDGRMLSLTRAVAKADAERLAAENSSARKQKDKRNMYLAYEGTINVNKLSAEELALPAMDVEKRRRAIREKKEKLKNPLYFVSPVRLSVRNLSAAVDDKKLKEVFRDGAAAGVREGVVDRAEVKTEL 752
BLAST of mRNA_H-elongata_contig136027.2547.1 vs. uniprot
Match: L8GR35_ACACA (RNA recognition motif domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GR35_ACACA) HSP 1 Score: 93.6 bits (231), Expect = 1.350e-19 Identity = 58/130 (44.62%), Postives = 77/130 (59.23%), Query Frame = 1
Query: 4 SCIFLGSRALHVTRAVDRDEAGRLTVGAQKRKGHKDKRNIYLANEGLVLEDSAAAEGAAKLDMDKRAASRRDKKTKLKNPLFFVSPVRLSVRNLAQHVTDGQLKAM---AAAAARAGIEAGRATPQDVRL 384
S IF+ R L + RAVD+ A + T +K +DKRN+YLA EG + + G +K+++ +R + R KK KLKNP FFVS RLSVRNL + VTD QLK + A A A A E G +DVR+
Sbjct: 598 SGIFMEGRELQIDRAVDKGTANQFTTATKKETEERDKRNLYLATEGYISPEMGEQMGLSKMEIARRDEAMRAKKQKLKNPNFFVSKTRLSVRNLPKSVTDKQLKKLFLDAVATAPAAAEPG--FKKDVRI 725
BLAST of mRNA_H-elongata_contig136027.2547.1 vs. uniprot
Match: F0WSK8_9STRA (Uncharacterized protein AlNc14C234G9352 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WSK8_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.830e-19 Identity = 55/134 (41.04%), Postives = 82/134 (61.19%), Query Frame = 1
Query: 1 GSCIFLGSRALHVTRAVDRDEAGRL-TVGAQKRKGHKDKRNIYLANEGLVLEDSAAAEGAA--KLDMDKRAASRRDKKTKLKNPLFFVSPVRLSVRNLAQHVTDGQLKAMAAAAARAGIEAGRATPQDVRLYLE 393
GS + L R L + RAV +++A L ++ K KDKRN+YLA EG + + +A+ KLD++KR + ++KK KLKNP++F+SPVRLS RNLA HV D LK + AA G+E ++++ L+
Sbjct: 570 GSALILDGRVLSLARAVRKEQAVELASITPTNTKSGKDKRNLYLAYEGTINVNKISADQLMLPKLDIEKRRRALKEKKEKLKNPMYFISPVRLSFRNLASHVDDTILKKLVRDAAICGMEGNLVQKKEIKSELQ 703 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136027.2547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig136027.2547.1 >prot_H-elongata_contig136027.2547.1 ID=prot_H-elongata_contig136027.2547.1|Name=mRNA_H-elongata_contig136027.2547.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp GSCIFLGSRALHVTRAVDRDEAGRLTVGAQKRKGHKDKRNIYLANEGLVLback to top mRNA from alignment at H-elongata_contig136027:230..1055+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig136027.2547.1 ID=mRNA_H-elongata_contig136027.2547.1|Name=mRNA_H-elongata_contig136027.2547.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=826bp|location=Sequence derived from alignment at H-elongata_contig136027:230..1055+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig136027:230..1055+ >mRNA_H-elongata_contig136027.2547.1 ID=mRNA_H-elongata_contig136027.2547.1|Name=mRNA_H-elongata_contig136027.2547.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig136027:230..1055+ (Himanthalia elongata Himel1 dioecious)back to top |