mRNA_H-elongata_contig136022.2546.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136022.2546.1
Unique NamemRNA_H-elongata_contig136022.2546.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig136022.2546.1 vs. uniprot
Match: D8LGC6_ECTSI (Eukaryotic translation initiation factor 2B gamma subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC6_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 7.790e-19
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 MQAVVLACEDGRRLYPLTQDQECPAPLLPVLNKPLLHYQLELLEKAGYTGAV 156
            +QAV+LACEDG+RLYPLTQD   PAPLLPVLN PLLHYQLELLEKAGYT A+
Sbjct:    7 LQAVILACEDGKRLYPLTQD--VPAPLLPVLNNPLLHYQLELLEKAGYTEAL 56
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BLAST of mRNA_H-elongata_contig136022.2546.1 vs. uniprot
Match: A0A835YVP1_9STRA (Eukaryotic translation initiation factor 2B gamma subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP1_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 6.960e-13
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 MQAVVLACEDGRRLYPLTQDQECPAPLLPVLNKPLLHYQLELLEKAGYTGAV 156
            +QAV+LAC DG RLYPLT+  ECP  LLPVLN+P+L YQL+LLE+AG+  A+
Sbjct:    6 LQAVILACGDGARLYPLTE--ECPLSLLPVLNRPILQYQLDLLEEAGFHRAL 55
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BLAST of mRNA_H-elongata_contig136022.2546.1 vs. uniprot
Match: A0A2P4P8Y6_RHIID (Nucleotide-diphospho-sugar transferase n=6 Tax=Rhizophagus TaxID=1129544 RepID=A0A2P4P8Y6_RHIID)

HSP 1 Score: 60.1 bits (144), Expect = 6.110e-9
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    4 QAVVLACEDGRRLYPLTQDQECPAPLLPVLNKPLLHYQLELLEKAGYTGAV 156
            QA+VL C  G RLYPLT+D   P  LLP+ NKP+LHY L+ LE+AG T  +
Sbjct:  103 QAIVL-CGYGNRLYPLTEDNNIPKALLPLANKPMLHYVLDWLERAGITDVI 152
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BLAST of mRNA_H-elongata_contig136022.2546.1 vs. uniprot
Match: A0A7S3F2F4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F2F4_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 9.760e-8
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 MQAVVLAC-EDGRRLYPLTQDQECPAPLLPVLNKPLLHYQLELLEKAG 141
            MQAV+LA   DG  LYPLT+    P  LLPV N+PLL YQLELLE+AG
Sbjct:    1 MQAVILASGNDGDNLYPLTE--LLPTALLPVANRPLLWYQLELLERAG 46
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BLAST of mRNA_H-elongata_contig136022.2546.1 vs. uniprot
Match: A0A6G0WUG6_9STRA (NTP_transferase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUG6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.290e-7
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    4 QAVVLACEDGRRLYPLTQDQECPAPLLPVLNKPLLHYQLELLEKAGYT 147
            QAV+LA   G RLYPLT+  E P PLLPV  KPLL+YQL LLEK+ ++
Sbjct:    5 QAVILAGGSGVRLYPLTE--ETPKPLLPVNGKPLLYYQLALLEKSDFS 50
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BLAST of mRNA_H-elongata_contig136022.2546.1 vs. uniprot
Match: A0A2U3CIG6_HEIAB (NTP_transferase domain-containing protein n=1 Tax=Heimdallarchaeota archaeon (strain B3-JM-08) TaxID=2012493 RepID=A0A2U3CIG6_HEIAB)

HSP 1 Score: 55.8 bits (133), Expect = 1.870e-7
Identity = 32/64 (50.00%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:    7 AVVLACEDGRRLYPLTQDQECPAPLLPVLNKPLLHYQLELLEKAGYTGAVGSILNPYRTRSVFY 198
            AVVLA   G RL PLTQ+   P PL+PV NKP++ Y LELL  AG TG +  I    R   + Y
Sbjct:    6 AVVLAGGIGSRLRPLTQN--IPKPLVPVANKPMIDYNLELLRNAGITGKIAIITRYMREEIIQY 67
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BLAST of mRNA_H-elongata_contig136022.2546.1 vs. uniprot
Match: A0A485L011_9STRA (Aste57867_13374 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L011_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.440e-7
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    4 QAVVLACEDGRRLYPLTQDQECPAPLLPVLNKPLLHYQLELLEKAGYT 147
            QAV+LA   G RLYPLT+  E P PLL V NKPLL+YQL LLE +G++
Sbjct:    5 QAVILAGGSGVRLYPLTE--ETPKPLLLVNNKPLLYYQLALLENSGFS 50
[Close]
BLAST of mRNA_H-elongata_contig136022.2546.1 vs. uniprot
Match: A0A7C3Q4P9_9BACT (NDP-sugar synthase (Fragment) n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A7C3Q4P9_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 2.950e-7
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    1 MQAVVLACEDGRRLYPLTQDQECPAPLLPVLNKPLLHYQLELLEKAGYTGAV 156
            M+A++LA   G RL PLT +   P PLLPV N+PL+HY L LL+K G T  V
Sbjct:    1 MKAMILAAGLGTRLRPLTNN--LPKPLLPVANRPLIHYNLLLLKKYGITDVV 50
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BLAST of mRNA_H-elongata_contig136022.2546.1 vs. uniprot
Match: UPI00068E5B56 (NDP-sugar synthase n=1 Tax=Metabacillus TaxID=2675233 RepID=UPI00068E5B56)

HSP 1 Score: 54.7 bits (130), Expect = 4.710e-7
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 MQAVVLACEDGRRLYPLTQDQECPAPLLPVLNKPLLHYQLELLEKAGYTGAVGSI 165
            M+AV+LA  +G RL PLT    CP PL+P+LNKP+L Y LELL++ G    + ++
Sbjct:    1 MKAVILAGGEGCRLRPLTN--HCPKPLVPILNKPVLEYSLELLKRHGIDDVIMTV 53
[Close]
BLAST of mRNA_H-elongata_contig136022.2546.1 vs. uniprot
Match: UPI00199BF69D (NDP-sugar synthase n=1 Tax=Candidatus Sericytochromatia bacterium TaxID=2762020 RepID=UPI00199BF69D)

HSP 1 Score: 54.7 bits (130), Expect = 4.740e-7
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    1 MQAVVLACEDGRRLYPLTQDQECPAPLLPVLNKPLLHYQLELLEKAGYTGAV 156
            MQA+++A   G RL PLT D   P P++P+ N+PLL+YQ+ELL++ G T  +
Sbjct:    1 MQAIIIAGGQGTRLRPLTYD--LPKPIIPIFNRPLLYYQIELLKRHGITDII 50
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136022.2546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGC6_ECTSI7.790e-1982.69Eukaryotic translation initiation factor 2B gamma ... [more]
A0A835YVP1_9STRA6.960e-1365.38Eukaryotic translation initiation factor 2B gamma ... [more]
A0A2P4P8Y6_RHIID6.110e-956.86Nucleotide-diphospho-sugar transferase n=6 Tax=Rhi... [more]
A0A7S3F2F4_9EUKA9.760e-864.58Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A6G0WUG6_9STRA1.290e-762.50NTP_transferase domain-containing protein n=1 Tax=... [more]
A0A2U3CIG6_HEIAB1.870e-750.00NTP_transferase domain-containing protein n=1 Tax=... [more]
A0A485L011_9STRA2.440e-762.50Aste57867_13374 protein n=1 Tax=Aphanomyces stella... [more]
A0A7C3Q4P9_9BACT2.950e-753.85NDP-sugar synthase (Fragment) n=1 Tax=Nitrospirae ... [more]
UPI00068E5B564.710e-749.09NDP-sugar synthase n=1 Tax=Metabacillus TaxID=2675... [more]
UPI00199BF69D4.740e-748.08NDP-sugar synthase n=1 Tax=Candidatus Sericytochro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136022contigH-elongata_contig136022:1247..1447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue3.2e-16
Seed eggNOG ortholog2880.D8LGC6
Preferred nameEIF2B3
KEGG rclassRC00052,RC00120
KEGG koko:K03241,ko:K10258,ko:K19398
KEGG ReactionR07761,R09449,R10828
KEGG Pathwayko00062,ko01040,ko01110,ko01212,ko03013,map00062,map01040,map01110,map01212,map03013
KEGG ModuleM00415
GOsGO:0001666,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005851,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009987,GO:0010001,GO:0010033,GO:0010243,GO:0010467,GO:0014003,GO:0019538,GO:0019899,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0021782,GO:0022008,GO:0023052,GO:0030154,GO:0030900,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034284,GO:0034641,GO:0034645,GO:0036293,GO:0036294,GO:0042063,GO:0042221,GO:0043043,GO:0043170,GO:0043434,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0048468,GO:0048513,GO:0048518,GO:0048583,GO:0048584,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051020,GO:0051716,GO:0060322,GO:0065007,GO:0065009,GO:0070482,GO:0070887,GO:0071453,GO:0071456,GO:0071704,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG1208@1,KOG1462@2759
EC1.3.1.93
COG Functional cat.JM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03012,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929807.9267838-CDS-H-elongata_contig136022:1246..14471622929807.9267838-CDS-H-elongata_contig136022:1246..1447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136022 1247..1447 -
1691679165.3426208-CDS-H-elongata_contig136022:1246..14471691679165.3426208-CDS-H-elongata_contig136022:1246..1447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136022 1247..1447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136022.2546.1prot_H-elongata_contig136022.2546.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136022 1247..1447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136022.2546.1

>prot_H-elongata_contig136022.2546.1 ID=prot_H-elongata_contig136022.2546.1|Name=mRNA_H-elongata_contig136022.2546.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MQAVVLACEDGRRLYPLTQDQECPAPLLPVLNKPLLHYQLELLEKAGYTG
AVGSILNPYRTRSVFYI
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mRNA from alignment at H-elongata_contig136022:1247..1447-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136022.2546.1 ID=mRNA_H-elongata_contig136022.2546.1|Name=mRNA_H-elongata_contig136022.2546.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig136022:1247..1447- (Himanthalia elongata Himel1 dioecious)
ATGCAGGCGGTTGTGCTGGCGTGCGAGGATGGGAGGAGGCTGTACCCCCT
GACACAAGACCAGGAATGCCCCGCACCATTGCTGCCCGTGCTCAATAAGC
CTCTTCTCCACTACCAGCTGGAGCTGTTAGAAAAGGCCGGCTACACAGGT
GCGGTCGGGTCTATCCTTAACCCCTATAGAACTCGATCTGTTTTTTACAT
A
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Coding sequence (CDS) from alignment at H-elongata_contig136022:1247..1447-

>mRNA_H-elongata_contig136022.2546.1 ID=mRNA_H-elongata_contig136022.2546.1|Name=mRNA_H-elongata_contig136022.2546.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig136022:1247..1447- (Himanthalia elongata Himel1 dioecious)
ATGCAGGCGGTTGTGCTGGCGTGCGAGGATGGGAGGAGGCTGTACCCCCT
GACACAAGACCAGGAATGCCCCGCACCATTGCTGCCCGTGCTCAATAAGC
CTCTTCTCCACTACCAGCTGGAGCTGTTAGAAAAGGCCGGCTACACAGGT
GCGGTCGGGTCTATCCTTAACCCCTATAGAACTCGATCTGTTTTTTACAT
AATGCAGGCGGTTGTGCTGGCGTGCGAGGATGGGAGGAGGCTGTACCCCC
TGACACAAGACCAGGAATGCCCCGCACCATTGCTGCCCGTGCTCAATAAG
CCTCTTCTCCACTACCAGCTGGAGCTGTTAGAAAAGGCCGGCTACACAGG
TGCGGTCGGGTCTATCCTTAACCCCTATAGAACTCGATCTGTTTTTTACA
TA
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