mRNA_H-elongata_contig136009.2545.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136009.2545.1
Unique NamemRNA_H-elongata_contig136009.2545.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig136009.2545.1 vs. uniprot
Match: A0A6H5JVI6_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI6_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.260e-18
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVS 129
            RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAV+
Sbjct:  324 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVA 366
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BLAST of mRNA_H-elongata_contig136009.2545.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.260e-18
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVS 129
            RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAV+
Sbjct: 1110 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVA 1152
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BLAST of mRNA_H-elongata_contig136009.2545.1 vs. uniprot
Match: A0A2D4C5L0_PYTIN (Transcription initiation factor TFIID subunit 1 puta n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5L0_PYTIN)

HSP 1 Score: 51.2 bits (121), Expect = 5.230e-6
Identity = 20/45 (44.44%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVSLG 135
            R+LTM Q       +G+P   +K LRRWDR+H+++EL+ VA ++G
Sbjct:  850 RKLTMKQAGDVLRNLGVPDGDIKKLRRWDRIHLLRELSNVATAVG 894
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BLAST of mRNA_H-elongata_contig136009.2545.1 vs. uniprot
Match: A0A7R9W476_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W476_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 7.810e-6
Identity = 22/55 (40.00%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVSLGYHSNIEAHCQ 165
            R+LTM Q+AS   + G+ +  + TL+RWDRVH+I++L+  A S G    +E + +
Sbjct:   38 RKLTMKQMASLLRSYGMGQKEIDTLKRWDRVHVIRDLSTKAASDGMGDGLERYAR 92
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BLAST of mRNA_H-elongata_contig136009.2545.1 vs. uniprot
Match: A0A7S0C985_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C985_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 1.010e-5
Identity = 22/55 (40.00%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVSLGYHSNIEAHCQ 165
            R+LTM Q+AS   + G+ ++ + TL+RWDRVH I++L+  A S G    +E + +
Sbjct:   54 RKLTMKQMASLLRSYGMKQNDIDTLKRWDRVHCIRDLSTKAASDGMGDGMEKYAR 108
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BLAST of mRNA_H-elongata_contig136009.2545.1 vs. uniprot
Match: A0A1Z5JFQ5_FISSO (Transcription initiation factor TFIID subunit 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFQ5_FISSO)

HSP 1 Score: 50.1 bits (118), Expect = 1.340e-5
Identity = 22/51 (43.14%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVSLGYHSNIE 153
            R+LTM Q+A+   + G+P+  + TL+RWDRVH+I++L+  A S G    +E
Sbjct:  881 RKLTMKQMAALLRSYGMPQKKIDTLKRWDRVHVIRDLSTKAASDGVGDGLE 931
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BLAST of mRNA_H-elongata_contig136009.2545.1 vs. uniprot
Match: B7FQ37_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FQ37_PHATC)

HSP 1 Score: 49.3 bits (116), Expect = 2.510e-5
Identity = 22/51 (43.14%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVSLGYHSNIE 153
            R+LTM Q+AS   + G+ ++ + TL+RWDRVH+I++L+  A S G    +E
Sbjct:  873 RKLTMKQMASLLRSYGMTQEKIDTLKRWDRVHVIRDLSTKAASDGIGDGLE 923
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BLAST of mRNA_H-elongata_contig136009.2545.1 vs. uniprot
Match: A0A7S2ELY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ELY9_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 2.780e-5
Identity = 22/55 (40.00%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:    1 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVSLGYHSNIEAHCQ 165
            R+LTM Q+AS   + G+    + TL+RWDRVH+I++L+  A S G    +E + +
Sbjct:   16 RKLTMKQMASLLRSYGMGDKEISTLKRWDRVHVIRDLSTKAASDGMGDGLERYAR 70
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BLAST of mRNA_H-elongata_contig136009.2545.1 vs. uniprot
Match: A0A8K1C3S9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3S9_PYTOL)

HSP 1 Score: 48.9 bits (115), Expect = 3.440e-5
Identity = 18/45 (40.00%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVSLG 135
            R+LTM +  +    +G+P+  +K LRRWDR+H+I++L+ +A ++G
Sbjct:  911 RKLTMKETGNVLRNLGVPEADIKNLRRWDRIHVIRQLSTMATAIG 955
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BLAST of mRNA_H-elongata_contig136009.2545.1 vs. uniprot
Match: A0A7S2E9I1_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E9I1_TRICV)

HSP 1 Score: 48.5 bits (114), Expect = 3.940e-5
Identity = 22/55 (40.00%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVSLGYHSNIEAHCQ 165
            R+LTM Q+AS   + G+ +  + TL+RWDRVH+I++L+  A S G    +E + +
Sbjct:   34 RKLTMKQMASLLRSYGMGQKEIDTLKRWDRVHVIRDLSTKAASDGMGDGLERYAR 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136009.2545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JVI6_9PHAE1.260e-1897.67Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FIW7_ECTSI1.260e-1897.67Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A2D4C5L0_PYTIN5.230e-644.44Transcription initiation factor TFIID subunit 1 pu... [more]
A0A7R9W476_9STRA7.810e-640.00Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S0C985_9STRA1.010e-540.00Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A1Z5JFQ5_FISSO1.340e-543.14Transcription initiation factor TFIID subunit 1 n=... [more]
B7FQ37_PHATC2.510e-543.14Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2ELY9_9STRA2.780e-540.00Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A8K1C3S9_PYTOL3.440e-540.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2E9I1_TRICV3.940e-540.00Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136009contigH-elongata_contig136009:1159..1326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue2.6e-13
Seed eggNOG ortholog2880.D7FIW7
KEGG koko:K03125
KEGG Pathwayko03022,map03022
EggNOG free text desc.negative regulation of protein autoubiquitination
EggNOG OGsCOG5179@1,KOG0008@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size156
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929807.872134-CDS-H-elongata_contig136009:1158..13141622929807.872134-CDS-H-elongata_contig136009:1158..1314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136009 1159..1314 -
1691679165.318963-CDS-H-elongata_contig136009:1158..13141691679165.318963-CDS-H-elongata_contig136009:1158..1314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136009 1159..1314 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929807.8879647-UTR-H-elongata_contig136009:1314..13261622929807.8879647-UTR-H-elongata_contig136009:1314..1326Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136009 1315..1326 -
1691679165.3306298-UTR-H-elongata_contig136009:1314..13261691679165.3306298-UTR-H-elongata_contig136009:1314..1326Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136009 1315..1326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136009.2545.1prot_H-elongata_contig136009.2545.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136009 1159..1314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136009.2545.1

>prot_H-elongata_contig136009.2545.1 ID=prot_H-elongata_contig136009.2545.1|Name=mRNA_H-elongata_contig136009.2545.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
MLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVSLGYHSNIEAHC
Q*
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mRNA from alignment at H-elongata_contig136009:1159..1326-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136009.2545.1 ID=mRNA_H-elongata_contig136009.2545.1|Name=mRNA_H-elongata_contig136009.2545.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig136009:1159..1326- (Himanthalia elongata Himel1 dioecious)
AGGCGGCTGACGATGCTGCAGCTGGCGTCGACGTGCGAGGCTATGGGCAT
TCCCAAGGACACGGTCAAAACCCTCAGACGCTGGGACAGGGTGCACATGA
TCAAGGAGCTGGCAGGCGTGGCGGTGAGCCTTGGTTATCATTCAAATATA
GAAGCGCATTGTCAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig136009:1159..1326-

>mRNA_H-elongata_contig136009.2545.1 ID=mRNA_H-elongata_contig136009.2545.1|Name=mRNA_H-elongata_contig136009.2545.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig136009:1159..1326- (Himanthalia elongata Himel1 dioecious)
ATGCTGCAGCTGGCGTCGACGTGCGAGGCTATGGGCATTCCCAAGGACAC
GGTCAAAACCCTCAGACGCTGGGACAGGGTGCACATGATCAAGGAGCTGG
CAGGCGTGGCGGTGAGCCTTGGTTATCATTCAAATATAGAAGCGCATTGT
CAGTAAATGCTGCAGCTGGCGTCGACGTGCGAGGCTATGGGCATTCCCAA
GGACACGGTCAAAACCCTCAGACGCTGGGACAGGGTGCACATGATCAAGG
AGCTGGCAGGCGTGGCGGTGAGCCTTGGTTATCATTCAAATATAGAAGCG
CATTGTCAGTAA
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