mRNA_H-elongata_contig136001.2543.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig136001.2543.1
Unique NamemRNA_H-elongata_contig136001.2543.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Match: A0A6H5KTI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI8_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.460e-34
Identity = 69/131 (52.67%), Postives = 94/131 (71.76%), Query Frame = 1 
Query:    4 RPLVGSLMWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTTATCEAEDVALCDASKEALFMRAAL 396
            R  +GS+MW+S  +RPDI+ A+RA ARH+H P+ RHWKA+++I AY+  T+ +G+ + RGSGL L+VY DA YA A  DRRSVSG+A  +GGT I   S TQ  V+ ++ EAE +A  +  KEALF+RA L
Sbjct:   82 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVL 211
[Close]
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.460e-33
Identity = 70/131 (53.44%), Postives = 92/131 (70.23%), Query Frame = 1 
Query:    4 RPLVGSLMWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTTATCEAEDVALCDASKEALFMRAAL 396
            R  +GS+MW+S  TRPDI  A+RA ARH+H P+ RHWKA+++I AY+  T+ +G+ + RGSGL L VY DA YA A  DRRSVSG+A  +GGT I   S TQ  V+ ++ EAE +A  +  KEALF+RA L
Sbjct:  163 REAIGSMMWVSTFTRPDICFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYKRGSGLGLEVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVL 292
[Close]
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.160e-33
Identity = 69/131 (52.67%), Postives = 88/131 (67.18%), Query Frame = 1 
Query:    1 YRPLVGSLMWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRFVRG--SGLKLSVYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTTATCEAEDVALCDASKEALFMR 387
            +R L+GSL+W++++TRPDIANA+RA AR+   P   HW+A L I  Y   T   G+ F RG  SG  L  +ADADYA+ + DRRSVSG  VM  G +I W S TQKCVT +T +AE VA+ D  KE LF+R
Sbjct:  163 FRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLR 293
[Close]
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.100e-32
Identity = 69/131 (52.67%), Postives = 90/131 (68.70%), Query Frame = 1 
Query:    4 RPLVGSLMWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTTATCEAEDVALCDASKEALFMRAAL 396
            R  +G LMW +  TRPDIA AL A  R++H P+ R WKAL+QI +Y+NAT  +G+ +VRGSGL L VY DA YA     RRSV+G+AV +GGT +   S TQ+ V+ +T EAE +A  +  KEALF+RA L
Sbjct: 1027 RQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVL 1157
[Close]
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.140e-32
Identity = 69/131 (52.67%), Postives = 90/131 (68.70%), Query Frame = 1 
Query:    4 RPLVGSLMWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTTATCEAEDVALCDASKEALFMRAAL 396
            R  +G LMW +  TRPDIA AL A  R++H P+ R WKAL+QI +Y+NAT  +G+ +VRGSGL L VY DA YA     RRSV+G+AV +GGT +   S TQ+ V+ +T EAE +A  +  KEALF+RA L
Sbjct: 1580 RQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVL 1710
[Close]
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.300e-32
Identity = 69/131 (52.67%), Postives = 94/131 (71.76%), Query Frame = 1 
Query:    4 RPLVGSLMWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTTATCEAEDVALCDASKEALFMRAAL 396
            R  +GS+MW+S  +RPDI+ A+RA ARH+H P+ RHWKA+++I AY+  T+ +G+ + RGSGL L+VY DA YA A  DRRSVSG+A  +GGT I   S TQ  V+ ++ EAE +A  +  KEALF+RA L
Sbjct:  291 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVL 420
[Close]
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 3.070e-32
Identity = 69/131 (52.67%), Postives = 94/131 (71.76%), Query Frame = 1 
Query:    4 RPLVGSLMWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTTATCEAEDVALCDASKEALFMRAAL 396
            R  +GS+MW+S  +RPDI+ A+RA ARH+H P+ RHWKA+++I AY+  T+ +G+ + RGSGL L+VY DA YA A  DRRSVSG+A  +GGT I   S TQ  V+ ++ EAE +A  +  KEALF+RA L
Sbjct:  378 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVL 507
[Close]
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 3.640e-32
Identity = 69/131 (52.67%), Postives = 88/131 (67.18%), Query Frame = 1 
Query:    1 YRPLVGSLMWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRFVRG--SGLKLSVYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTTATCEAEDVALCDASKEALFMR 387
            +R L+GSL+W++++TRPDIANA+RA AR+   P   HW+A L I  Y   T   G+ F RG  SG  L  +ADADYA+ + DRRSVSG  VM  G +I W S TQKCVT +T +AE VA+ D  KE LF+R
Sbjct:  467 FRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLR 597
[Close]
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 5.390e-32
Identity = 69/131 (52.67%), Postives = 94/131 (71.76%), Query Frame = 1 
Query:    4 RPLVGSLMWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTTATCEAEDVALCDASKEALFMRAAL 396
            R  +GS+MW+S  +RPDI+ A+RA ARH+H P+ RHWKA+++I AY+  T+ +G+ + RGSGL L+VY DA YA A  DRRSVSG+A  +GGT I   S TQ  V+ ++ EAE +A  +  KEALF+RA L
Sbjct: 1357 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVL 1486
[Close]
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Match: A0A6H5JNN1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN1_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 5.440e-32
Identity = 69/131 (52.67%), Postives = 94/131 (71.76%), Query Frame = 1 
Query:    4 RPLVGSLMWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRFVRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTTATCEAEDVALCDASKEALFMRAAL 396
            R  +GS+MW+S  +RPDI+ A+RA ARH+H P+ RHWKA+++I AY+  T+ +G+ + RGSGL L+VY DA YA A  DRRSVSG+A  +GGT I   S TQ  V+ ++ EAE +A  +  KEALF+RA L
Sbjct: 1455 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVL 1584
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig136001.2543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTI8_9PHAE1.460e-3452.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L589_9PHAE1.460e-3353.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWK8_9PHAE2.160e-3352.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKS3_9PHAE2.100e-3252.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE2.140e-3252.67Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCG0_9PHAE2.300e-3252.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGX6_9PHAE3.070e-3252.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR13_9PHAE3.640e-3252.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L715_9PHAE5.390e-3252.67CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JNN1_9PHAE5.440e-3252.67CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig136001contigH-elongata_contig136001:3..398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue6.3e-18
Seed eggNOG ortholog164328.Phyra87153
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHHJ@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons1
Model size396
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929807.6973913-UTR-H-elongata_contig136001:2..261622929807.6973913-UTR-H-elongata_contig136001:2..26Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136001 3..26 +
1691679165.250864-UTR-H-elongata_contig136001:2..261691679165.250864-UTR-H-elongata_contig136001:2..26Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig136001 3..26 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929807.7482128-CDS-H-elongata_contig136001:26..3981622929807.7482128-CDS-H-elongata_contig136001:26..398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136001 27..398 +
1691679165.2695773-CDS-H-elongata_contig136001:26..3981691679165.2695773-CDS-H-elongata_contig136001:26..398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig136001 27..398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig136001.2543.1prot_H-elongata_contig136001.2543.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig136001 27..398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig136001.2543.1

>prot_H-elongata_contig136001.2543.1 ID=prot_H-elongata_contig136001.2543.1|Name=mRNA_H-elongata_contig136001.2543.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MWLSVMTRPDIANALRACARHSHNPSPRHWKALLQIAAYVNATKVIGLRF
VRGSGLKLSVYADADYAAASNDRRSVSGVAVMLGGTSIGWKSSTQKCVTT
ATCEAEDVALCDASKEALFMRAAL
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mRNA from alignment at H-elongata_contig136001:3..398+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig136001.2543.1 ID=mRNA_H-elongata_contig136001.2543.1|Name=mRNA_H-elongata_contig136001.2543.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=396bp|location=Sequence derived from alignment at H-elongata_contig136001:3..398+ (Himanthalia elongata Himel1 dioecious)
TACCGACCCCTAGTTGGTAGTCTGATGTGGCTATCAGTGATGACGAGACC
TGATATCGCTAATGCGTTGCGCGCGTGCGCGCGTCACAGCCACAACCCTA
GTCCGCGGCATTGGAAGGCGCTCCTGCAGATCGCTGCGTACGTGAATGCC
ACAAAAGTGATAGGTCTGAGGTTTGTGCGAGGTTCTGGTCTGAAGCTTTC
TGTTTACGCTGATGCTGATTACGCGGCGGCATCTAATGACCGAAGGTCCG
TGTCTGGTGTTGCAGTGATGTTGGGAGGCACATCCATTGGCTGGAAGAGT
TCTACGCAGAAATGCGTGACGACTGCCACGTGTGAAGCCGAGGACGTTGC
ATTGTGTGATGCGTCCAAAGAGGCGCTCTTCATGAGAGCCGCCTTG
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Coding sequence (CDS) from alignment at H-elongata_contig136001:3..398+

>mRNA_H-elongata_contig136001.2543.1 ID=mRNA_H-elongata_contig136001.2543.1|Name=mRNA_H-elongata_contig136001.2543.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig136001:3..398+ (Himanthalia elongata Himel1 dioecious)
ATGTGGCTATCAGTGATGACGAGACCTGATATCGCTAATGCGTTGCGCGC
GTGCGCGCGTCACAGCCACAACCCTAGTCCGCGGCATTGGAAGGCGCTCC
TGCAGATCGCTGCGTACGTGAATGCCACAAAAGTGATAGGTCTGAGGTTT
GTGCGAGGTTCTGGTCTGAAGCTTTCTGTTTACGCTGATGCTGATTACGC
GGCGGCATCTAATGACCGAAGGTCCGTGTCTGGTGTTGCAGTGATGTTGG
GAGGCACATCCATTGGCTGGAAGAGTTCTACGCAGAAATGCGTGACGACT
GCCACGTGTGAAGCCGAGGACGTTGCATTGTGTGATGCGTCCAAAGAGGC
GCTCTTCATGAGAGCCGCCTTGATGTGGCTATCAGTGATGACGAGACCTG
ATATCGCTAATGCGTTGCGCGCGTGCGCGCGTCACAGCCACAACCCTAGT
CCGCGGCATTGGAAGGCGCTCCTGCAGATCGCTGCGTACGTGAATGCCAC
AAAAGTGATAGGTCTGAGGTTTGTGCGAGGTTCTGGTCTGAAGCTTTCTG
TTTACGCTGATGCTGATTACGCGGCGGCATCTAATGACCGAAGGTCCGTG
TCTGGTGTTGCAGTGATGTTGGGAGGCACATCCATTGGCTGGAAGAGTTC
TACGCAGAAATGCGTGACGACTGCCACGTGTGAAGCCGAGGACGTTGCAT
TGTGTGATGCGTCCAAAGAGGCGCTCTTCATGAGAGCCGCCTTG
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