mRNA_H-elongata_contig135988.2536.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135988.2536.1
Unique NamemRNA_H-elongata_contig135988.2536.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig135988.2536.1 vs. uniprot
Match: D8LI02_ECTSI (Prolyl endopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI02_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 3.100e-29
Identity = 54/60 (90.00%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 LVGACINQHPELFAAAVAQVGVMDMLRFDEFTIGFAWRSDYGSSKASEDQFKTLRAYSPV 180
            LVGAC+NQHPELF AAVAQVGVMDMLRFDEFTIG+AWRSD+GSSKA+E+QFKTLRAYSPV
Sbjct:  622 LVGACVNQHPELFGAAVAQVGVMDMLRFDEFTIGYAWRSDFGSSKATEEQFKTLRAYSPV 681
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BLAST of mRNA_H-elongata_contig135988.2536.1 vs. uniprot
Match: A0A7S3XS46_HETAK (Prolyl endopeptidase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS46_HETAK)

HSP 1 Score: 97.4 bits (241), Expect = 3.330e-22
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 LVGACINQHPELFAAAVAQVGVMDMLRFDEFTIGFAWRSDYGSSKASEDQFKTLRAYSPV 180
            LVGACINQ PELFAAAVAQVGVMDMLRF +FTIG+AW SDYG++     +F+TLRAYSPV
Sbjct:  627 LVGACINQRPELFAAAVAQVGVMDMLRFHKFTIGYAWCSDYGNADKDAAEFRTLRAYSPV 686
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BLAST of mRNA_H-elongata_contig135988.2536.1 vs. uniprot
Match: A0A835YIC5_9STRA (Prolyl endopeptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIC5_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.160e-21
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 LVGACINQHPELFAAAVAQVGVMDMLRFDEFTIGFAWRSDYGSSKASEDQFKTLRAYSPV 180
            LVGACINQ PELFAAAVAQVGVMDMLRF +FTIG+AW SDYG+    ++++K LRAYSPV
Sbjct:  607 LVGACINQQPELFAAAVAQVGVMDMLRFHKFTIGYAWCSDYGNPDDDKNKYKVLRAYSPV 666
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BLAST of mRNA_H-elongata_contig135988.2536.1 vs. uniprot
Match: A0A7S0N0Y8_9CRYP (Prolyl endopeptidase n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N0Y8_9CRYP)

HSP 1 Score: 90.5 bits (223), Expect = 3.310e-21
Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 LVGACINQHPELFAAAVAQVGVMDMLRFDEFTIGFAWRSDYGSSKASEDQFKTLRAYSPV 180
            LVGAC+NQ P+LFA  + QVGVMDMLRF  FTIG AW +DYG ++ASE++F+TL AYSP+
Sbjct:   51 LVGACVNQRPDLFACGIPQVGVMDMLRFHRFTIGAAWCADYGCAEASEEEFRTLLAYSPL 110
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BLAST of mRNA_H-elongata_contig135988.2536.1 vs. uniprot
Match: L1JVF7_GUITC (Prolyl endopeptidase (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JVF7_GUITC)

HSP 1 Score: 92.0 bits (227), Expect = 2.600e-20
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 LVGACINQHPELFAAAVAQVGVMDMLRFDEFTIGFAWRSDYGSSKASEDQFKTLRAYSPV 180
            LVGAC+NQ P+LFAAA+ QVGVMDMLRF +FTIG+AW SDYG S+ SE++FK L A SP+
Sbjct:  576 LVGACVNQRPDLFAAAIPQVGVMDMLRFHKFTIGYAWCSDYGCSENSEEEFKALYAISPL 635
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BLAST of mRNA_H-elongata_contig135988.2536.1 vs. uniprot
Match: A0A2R7S7I8_9BURK (S9 family peptidase (Fragment) n=1 Tax=Pelomonas sp. HMWF004 TaxID=2056841 RepID=A0A2R7S7I8_9BURK)

HSP 1 Score: 87.0 bits (214), Expect = 6.470e-20
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 LVGACINQHPELFAAAVAQVGVMDMLRFDEFTIGFAWRSDYGSSKASEDQFKTLRAYSPV 180
            LVGA  NQ P+LFAAAV QVGVMDMLR+  FTIG+AW +DYG+SK S + FK L AYSP+
Sbjct:   52 LVGAVANQRPDLFAAAVPQVGVMDMLRYQNFTIGWAWATDYGTSKDSPEMFKALYAYSPL 111
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BLAST of mRNA_H-elongata_contig135988.2536.1 vs. uniprot
Match: A0A0G4IMG2_PLABS (Prolyl endopeptidase n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IMG2_PLABS)

HSP 1 Score: 90.9 bits (224), Expect = 6.620e-20
Identity = 39/60 (65.00%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 LVGACINQHPELFAAAVAQVGVMDMLRFDEFTIGFAWRSDYGSSKASEDQFKTLRAYSPV 180
            LV AC+NQ P+LF  AVAQVGVMDMLRF +FTIG+AW SDYG+++ +E +FK++ AYSP+
Sbjct:  567 LVAACVNQRPDLFGCAVAQVGVMDMLRFHKFTIGYAWTSDYGNAETNEQEFKSILAYSPL 626
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BLAST of mRNA_H-elongata_contig135988.2536.1 vs. uniprot
Match: A0A520BQM4_9BURK (S9 family peptidase n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=A0A520BQM4_9BURK)

HSP 1 Score: 89.4 bits (220), Expect = 2.300e-19
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 LVGACINQHPELFAAAVAQVGVMDMLRFDEFTIGFAWRSDYGSSKASEDQFKTLRAYSPV 180
            LVGA  NQ P+LFAAAV QVGVMDMLR+  FTIG+AW SDYG+S  S + FK LRAYSP+
Sbjct:  561 LVGAVTNQRPDLFAAAVPQVGVMDMLRYQNFTIGWAWASDYGTSADSPEMFKALRAYSPI 620
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BLAST of mRNA_H-elongata_contig135988.2536.1 vs. uniprot
Match: A0A7W7ZBF1_9BACT (Prolyl oligopeptidase n=1 Tax=Granulicella aggregans TaxID=474949 RepID=A0A7W7ZBF1_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 2.300e-19
Identity = 38/60 (63.33%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 LVGACINQHPELFAAAVAQVGVMDMLRFDEFTIGFAWRSDYGSSKASEDQFKTLRAYSPV 180
            LVGAC+ Q PELF AAVAQVGVMDMLRFD+FTIG+AW++DYG+   ++++F+ +  YSP+
Sbjct:  567 LVGACVTQRPELFGAAVAQVGVMDMLRFDKFTIGWAWKADYGAPSENKEEFEAIYKYSPL 626
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BLAST of mRNA_H-elongata_contig135988.2536.1 vs. uniprot
Match: A0A136KCD1_9BACT (Prolyl oligopeptidase n=1 Tax=Acidobacteria bacterium OLB17 TaxID=1617423 RepID=A0A136KCD1_9BACT)

HSP 1 Score: 88.6 bits (218), Expect = 4.290e-19
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 LVGACINQHPELFAAAVAQVGVMDMLRFDEFTIGFAWRSDYGSSKASEDQFKTLRAYSP 177
            LVGA +NQHP+LFAAAV QVGVMDMLRFD+FTIG+AWRSDYG+   + D FK + AYSP
Sbjct:  573 LVGATLNQHPDLFAAAVPQVGVMDMLRFDKFTIGWAWRSDYGNPADAAD-FKAMYAYSP 630
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135988.2536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI02_ECTSI3.100e-2990.00Prolyl endopeptidase n=1 Tax=Ectocarpus siliculosu... [more]
A0A7S3XS46_HETAK3.330e-2276.67Prolyl endopeptidase n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YIC5_9STRA1.160e-2175.00Prolyl endopeptidase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S0N0Y8_9CRYP3.310e-2166.67Prolyl endopeptidase n=1 Tax=Cryptomonas curvata T... [more]
L1JVF7_GUITC2.600e-2070.00Prolyl endopeptidase (Fragment) n=1 Tax=Guillardia... [more]
A0A2R7S7I8_9BURK6.470e-2068.33S9 family peptidase (Fragment) n=1 Tax=Pelomonas s... [more]
A0A0G4IMG2_PLABS6.620e-2065.00Prolyl endopeptidase n=1 Tax=Plasmodiophora brassi... [more]
A0A520BQM4_9BURK2.300e-1970.00S9 family peptidase n=1 Tax=Rubrivivax sp. TaxID=5... [more]
A0A7W7ZBF1_9BACT2.300e-1963.33Prolyl oligopeptidase n=1 Tax=Granulicella aggrega... [more]
A0A136KCD1_9BACT4.290e-1972.88Prolyl oligopeptidase n=1 Tax=Acidobacteria bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135988contigH-elongata_contig135988:720..1239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue1.7e-24
Seed eggNOG ortholog2880.D8LI02
Preferred namePREP
KEGG koko:K01322
KEGG Pathwayko04614,map04614
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009966,GO:0010646,GO:0016787,GO:0016788,GO:0017171,GO:0019538,GO:0023051,GO:0033218,GO:0042277,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0052689,GO:0065007,GO:0070011,GO:0070012,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.serine-type exopeptidase activity
EggNOG OGsCOG1505@1,KOG2237@2759
EC3.4.21.26
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons2
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929807.0000567-CDS-H-elongata_contig135988:719..8421622929807.0000567-CDS-H-elongata_contig135988:719..842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135988 720..842 -
1691679164.913363-CDS-H-elongata_contig135988:719..8421691679164.913363-CDS-H-elongata_contig135988:719..842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135988 720..842 -
1622929807.0170968-CDS-H-elongata_contig135988:1182..12391622929807.0170968-CDS-H-elongata_contig135988:1182..1239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135988 1183..1239 -
1691679164.9257567-CDS-H-elongata_contig135988:1182..12391691679164.9257567-CDS-H-elongata_contig135988:1182..1239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135988 1183..1239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135988.2536.1prot_H-elongata_contig135988.2536.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135988 720..1239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135988.2536.1

>prot_H-elongata_contig135988.2536.1 ID=prot_H-elongata_contig135988.2536.1|Name=mRNA_H-elongata_contig135988.2536.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
LVGACINQHPELFAAAVAQVGVMDMLRFDEFTIGFAWRSDYGSSKASEDQ
FKTLRAYSPV
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mRNA from alignment at H-elongata_contig135988:720..1239-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135988.2536.1 ID=mRNA_H-elongata_contig135988.2536.1|Name=mRNA_H-elongata_contig135988.2536.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=520bp|location=Sequence derived from alignment at H-elongata_contig135988:720..1239- (Himanthalia elongata Himel1 dioecious)
CTAGTGGGCGCCTGCATCAACCAGCACCCGGAGCTCTTCGCCGCGGCCGT
GGCTCAGGTATTATAGTACACTACATTATACTACAATGTATTAGATAGCA
CCCATGGAGGGTGCTGAGGGGGGGACACGAAGGCATCATCCCCGAGGGTT
TCTACCCTAGGCGTTAACGAGCTACCATATTCTATGTAGGCCCATGCTTA
CAATAAGGGCTCGCTGACCATACATACATACATACATACATACATATATT
ATTTTAGAGAGATATGATGGATTGAGCAACCGATCGGCATGCACACGAGT
TACGATAGGAAAACCCAATCCAAGAAATTTACAGGAAGAAAGAATTATAC
TCGTTATAGTGTGCCTTTTAAAGTTATTCGCTCACTCTTCCCTCCAGGTG
GGTGTGATGGACATGCTCCGGTTTGACGAGTTCACGATCGGGTTCGCGTG
GCGCAGCGACTATGGCAGCTCCAAGGCCAGCGAGGACCAGTTCAAGACCC
TCCGTGCCTACTCCCCTGTA
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Coding sequence (CDS) from alignment at H-elongata_contig135988:720..1239-

>mRNA_H-elongata_contig135988.2536.1 ID=mRNA_H-elongata_contig135988.2536.1|Name=mRNA_H-elongata_contig135988.2536.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig135988:720..1239- (Himanthalia elongata Himel1 dioecious)
CTAGTGGGCGCCTGCATCAACCAGCACCCGGAGCTCTTCGCCGCGGCCGT
GGCTCAGCTAGTGGGCGCCTGCATCAACCAGCACCCGGAGCTCTTCGCCG
CGGCCGTGGCTCAGGTGGGTGTGATGGACATGCTCCGGTTTGACGAGTTC
ACGATCGGGTTCGCGTGGCGCAGCGACTATGGCAGCTCCAAGGCCAGCGA
GGACCAGTTCAAGACCCTCCGTGCCTACTCCCCTGTAGTGGGTGTGATGG
ACATGCTCCGGTTTGACGAGTTCACGATCGGGTTCGCGTGGCGCAGCGAC
TATGGCAGCTCCAAGGCCAGCGAGGACCAGTTCAAGACCCTCCGTGCCTA
CTCCCCTGTA
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