mRNA_H-elongata_contig135908.2532.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135908.2532.1
Unique NamemRNA_H-elongata_contig135908.2532.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig135908.2532.1 vs. uniprot
Match: D8LGI7_ECTSI (TIP120 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGI7_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 3.860e-49
Identity = 86/105 (81.90%), Postives = 95/105 (90.48%), Query Frame = 1 
Query:   22 QTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELRENCFQGFESFVVRCPREVTPHLLKIINVALQYIKYDPNYSYGDEDDGNSQEDVDMGAEE 336
            QTIGTISRTVGYRLGRHLDSIVPLF +FCGDP+DES HTEAADELRENCFQGFESFV+RCPREVTPHL  II+V+LQYIKYDPNYSYGD++DG+   D+D   EE
Sbjct:  129 QTIGTISRTVGYRLGRHLDSIVPLFFQFCGDPEDESLHTEAADELRENCFQGFESFVMRCPREVTPHLSGIISVSLQYIKYDPNYSYGDDEDGDEXVDMDEEYEE 233
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BLAST of mRNA_H-elongata_contig135908.2532.1 vs. uniprot
Match: A0A835Z0R5_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0R5_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.210e-41
Identity = 70/91 (76.92%), Postives = 80/91 (87.91%), Query Frame = 1 
Query:   22 QTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELRENCFQGFESFVVRCPREVTPHLLKIINVALQYIKYDPNYSYGDED 294
            Q IGTISRTVG+RLGRHLD+IVPLFLKF GD DDE  HTEAA ELR+NCFQGFESFV+RCPREVTPHL KI++V L++ +YDPNYSY  +D
Sbjct:  228 QAIGTISRTVGFRLGRHLDAIVPLFLKFIGDMDDEDMHTEAASELRDNCFQGFESFVLRCPREVTPHLDKILDVVLRFARYDPNYSYDSDD 318
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BLAST of mRNA_H-elongata_contig135908.2532.1 vs. uniprot
Match: A0A485LBH5_9STRA (Aste57867_18631 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBH5_9STRA)

HSP 1 Score: 139 bits (349), Expect = 8.550e-36
Identity = 63/91 (69.23%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:   22 QTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELRENCFQGFESFVVRCPREVTPHLLKIINVALQYIKYDPNYSYGDED 294
            QTIGT+SRTVG+RLGRHL +IVPLFL FCG PDDES   +A++ELRENCFQG E+FV+RC  E+TPH   I++VA+ + KYDPNY YGDED
Sbjct:  230 QTIGTLSRTVGHRLGRHLPTIVPLFLTFCGTPDDESLQNDASNELRENCFQGLEAFVLRCHAEITPHTTDILSVAMAFAKYDPNYMYGDED 320
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BLAST of mRNA_H-elongata_contig135908.2532.1 vs. uniprot
Match: A0A7S2CTN9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTN9_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.280e-35
Identity = 62/91 (68.13%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:   22 QTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELRENCFQGFESFVVRCPREVTPHLLKIINVALQYIKYDPNYSYGDED 294
            QT+GT+SRTVGYRLGRHLDSIVPLFLKF GDP+DE+  TE  +ELRE C QGFESFV+RC RE+ PHL  I   +L ++K+DPNY+YGD++
Sbjct:   21 QTVGTVSRTVGYRLGRHLDSIVPLFLKFVGDPEDEATQTEQHNELRETCLQGFESFVLRCNREIQPHLESITTTSLLFMKFDPNYNYGDDE 111
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BLAST of mRNA_H-elongata_contig135908.2532.1 vs. uniprot
Match: A0A6G0WW89_9STRA (TIP120 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WW89_9STRA)

HSP 1 Score: 136 bits (343), Expect = 5.510e-35
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:   22 QTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELRENCFQGFESFVVRCPREVTPHLLKIINVALQYIKYDPNYSYGDED 294
            QTIGT+SR VG+RLGRHL +IVPLFLKFCG  DDES   +A++ELRENCFQG E+FV+RC  E+TPH   I+ VA+ + KYDPNY YGDED
Sbjct:  230 QTIGTLSRAVGHRLGRHLPTIVPLFLKFCGSTDDESMQNDASNELRENCFQGLEAFVLRCHAEITPHTTDILAVAMSFAKYDPNYMYGDED 320
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BLAST of mRNA_H-elongata_contig135908.2532.1 vs. uniprot
Match: A0A7S2FNG9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FNG9_9STRA)

HSP 1 Score: 136 bits (343), Expect = 5.510e-35
Identity = 63/93 (67.74%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:   22 QTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELRENCFQGFESFVVRCPREVTPHLLKIINVALQYIKYDPNYSYG-DEDD 297
            QT+GTISR VGYRLGRHL+++VPLF+ F GDP+DESQ T+   ELRE C QGFESFV+RC RE+TPH+  II VA+ ++KYDPNY+YG DE+D
Sbjct:  227 QTVGTISRVVGYRLGRHLNTVVPLFVTFLGDPEDESQQTDTYHELRETCLQGFESFVLRCNREITPHVTNIITVAMAFMKYDPNYNYGSDEED 319
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BLAST of mRNA_H-elongata_contig135908.2532.1 vs. uniprot
Match: K3X436_GLOUD (TIP120 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X436_GLOUD)

HSP 1 Score: 135 bits (341), Expect = 1.020e-34
Identity = 57/92 (61.96%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:   22 QTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELRENCFQGFESFVVRCPREVTPHLLKIINVALQYIKYDPNYSYGDEDD 297
            QTIGT+SRT G+RLG HL++I+P+ +KFCGDP+DES   EA+ ELRENCFQ FESFV+RC  E+TPH+  I+ + +++IKYDPNY+YG+ +D
Sbjct:  230 QTIGTLSRTAGHRLGHHLNAIIPILVKFCGDPEDESLQNEASSELRENCFQAFESFVIRCHNEITPHVESILTLVMEFIKYDPNYNYGESED 321
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BLAST of mRNA_H-elongata_contig135908.2532.1 vs. uniprot
Match: A0A397B2C2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B2C2_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.570e-34
Identity = 60/91 (65.93%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:   22 QTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELRENCFQGFESFVVRCPREVTPHLLKIINVALQYIKYDPNYSYGDED 294
            QTIGT+SRTVG+RLGRHL +IVPLFL FCG PD+E+   + A+ELRENCFQG E+FV+RC  E+TPH   I++VA+ + KYDPNY YGD+D
Sbjct:  194 QTIGTLSRTVGHRLGRHLPTIVPLFLTFCGTPDNEAMQNDTANELRENCFQGLEAFVLRCHAEITPHTTDILSVAIAFSKYDPNYMYGDDD 284
[Close]
BLAST of mRNA_H-elongata_contig135908.2532.1 vs. uniprot
Match: A0A397BSL2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BSL2_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.610e-34
Identity = 60/91 (65.93%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:   22 QTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELRENCFQGFESFVVRCPREVTPHLLKIINVALQYIKYDPNYSYGDED 294
            QTIGT+SRTVG+RLGRHL +IVPLFL FCG PD+E+   + A+ELRENCFQG E+FV+RC  E+TPH   I++VA+ + KYDPNY YGD+D
Sbjct:  356 QTIGTLSRTVGHRLGRHLPTIVPLFLTFCGTPDNEAMQNDTANELRENCFQGLEAFVLRCHAEITPHTTDILSVAIAFSKYDPNYMYGDDD 446
[Close]
BLAST of mRNA_H-elongata_contig135908.2532.1 vs. uniprot
Match: A0A3R7BF32_9STRA (EF-hand domain-containing protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BF32_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.650e-34
Identity = 60/91 (65.93%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:   22 QTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAADELRENCFQGFESFVVRCPREVTPHLLKIINVALQYIKYDPNYSYGDED 294
            QTIGT+SRTVG+RLGRHL +IVPLFL FCG PD+E+   + A+ELRENCFQG E+FV+RC  E+TPH   I++VA+ + KYDPNY YGD+D
Sbjct:  989 QTIGTLSRTVGHRLGRHLPTIVPLFLTFCGTPDNEAMQNDTANELRENCFQGLEAFVLRCHAEITPHTTDILSVAIAFSKYDPNYMYGDDD 1079
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135908.2532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGI7_ECTSI3.860e-4981.90TIP120 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835Z0R5_9STRA1.210e-4176.92Armadillo-type protein (Fragment) n=1 Tax=Tribonem... [more]
A0A485LBH5_9STRA8.550e-3669.23Aste57867_18631 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S2CTN9_9STRA1.280e-3568.13Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A6G0WW89_9STRA5.510e-3568.13TIP120 domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A7S2FNG9_9STRA5.510e-3567.74Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K3X436_GLOUD1.020e-3461.96TIP120 domain-containing protein n=1 Tax=Globispor... [more]
A0A397B2C2_9STRA2.570e-3465.93Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A397BSL2_9STRA2.610e-3465.93Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A3R7BF32_9STRA2.650e-3465.93EF-hand domain-containing protein n=11 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135908contigH-elongata_contig135908:129..946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.4
Seed ortholog evalue2.4e-43
Seed eggNOG ortholog2880.D8LGI7
Preferred nameCAND1
KEGG koko:K09490,ko:K17263
KEGG TC1.A.33
KEGG Pathwayko03060,ko04141,ko04918,ko05020,map03060,map04141,map04918,map05020
GOsGO:0000003,GO:0000151,GO:0000909,GO:0003002,GO:0003006,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006725,GO:0006807,GO:0007049,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0009404,GO:0009653,GO:0009712,GO:0009719,GO:0009725,GO:0009733,GO:0009791,GO:0009987,GO:0010033,GO:0010051,GO:0010228,GO:0010265,GO:0016020,GO:0016043,GO:0016567,GO:0016999,GO:0017144,GO:0018904,GO:0018940,GO:0018958,GO:0019538,GO:0019748,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030154,GO:0030312,GO:0030435,GO:0030582,GO:0030584,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034293,GO:0036211,GO:0042221,GO:0042537,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043385,GO:0043412,GO:0043933,GO:0043934,GO:0043935,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050790,GO:0050896,GO:0051321,GO:0051704,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070647,GO:0071704,GO:0071840,GO:0071944,GO:0072490,GO:0075259,GO:1900570,GO:1900588,GO:1900591,GO:1900797,GO:1901360,GO:1901564,GO:1901615,GO:1902494,GO:1903046,GO:1990234
EggNOG free text desc.SCF complex assembly
EggNOG OGsKOG1824@1,KOG1824@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-10_001920.1
Exons2
Model size345
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929806.57316-CDS-H-elongata_contig135908:128..3021622929806.57316-CDS-H-elongata_contig135908:128..302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135908 129..302 +
1691679164.7482684-CDS-H-elongata_contig135908:128..3021691679164.7482684-CDS-H-elongata_contig135908:128..302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135908 129..302 +
1622929806.5891078-CDS-H-elongata_contig135908:775..9461622929806.5891078-CDS-H-elongata_contig135908:775..946Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135908 776..946 +
1691679164.758119-CDS-H-elongata_contig135908:775..9461691679164.758119-CDS-H-elongata_contig135908:775..946Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135908 776..946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135908.2532.1prot_H-elongata_contig135908.2532.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135908 129..946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135908.2532.1

>prot_H-elongata_contig135908.2532.1 ID=prot_H-elongata_contig135908.2532.1|Name=mRNA_H-elongata_contig135908.2532.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MLPLLCAQTIGTISRTVGYRLGRHLDSIVPLFLKFCGDPDDESQHTEAAD
ELRENCFQGFESFVVRCPREVTPHLLKIINVALQYIKYDPNYSYGDEDDG
NSQEDVDMGAEEDEE
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mRNA from alignment at H-elongata_contig135908:129..946+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135908.2532.1 ID=mRNA_H-elongata_contig135908.2532.1|Name=mRNA_H-elongata_contig135908.2532.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=818bp|location=Sequence derived from alignment at H-elongata_contig135908:129..946+ (Himanthalia elongata Himel1 dioecious)
ATGCTACCCCTGCTGTGCGCGCAGACCATTGGTACCATCAGCCGTACCGT
TGGGTACCGCCTGGGGCGACACCTGGACTCCATCGTGCCGCTGTTCCTCA
AATTCTGCGGTGATCCCGACGACGAGAGCCAACACACGGAGGCCGCGGAC
GAGCTCAGAGAAAACTGCTTCCAGGTCGTAAAGCAAATGTTTCTTAAATA
TTTCGTAGGCTTTTGAGGCGCTGTGATAGGCCAAGTGTTGGGGCGGAGAG
GGAGAGGTTGTTGTCTGGTGGTGTGTTATGTGTCAAAGCCACCAAATCGC
TCAGGGCCCTGCCCTTAAAACTCGATATATGATATCGCAGCGAGATAGGC
GTTTCCCAGTCCAATCCCGTTGTGCTTTTGATGATCTACCGGCGATGCGT
TCTTTTCCGTCATTACCCCCAAACACGCCTGCTTCTCCTTATTTTTAAAA
CAGTTACCGCTCGTCTCGGGTGACGCGATGCGGTAGGGCGGGCCTTCGAT
TCCTTGCGCGGGAAGCTCAATAATCTTAAAGCATCCAACACTCCCTTGTC
GCTTGCGTTTCCCTCACGCGCCGCCACGTTACGCGATATCCCTTCGCCCT
TTTTGTCGATAACGCCTCCTTCTGTTTCCAATCTCCTCTTGACACAGGGC
TTCGAGTCGTTCGTGGTGCGGTGTCCCCGCGAGGTTACGCCCCATCTCCT
CAAGATCATTAACGTGGCTCTCCAGTACATCAAGTACGATCCGAACTACA
GCTACGGCGACGAGGATGATGGGAACAGCCAGGAGGATGTAGACATGGGC
GCCGAGGAAGACGAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig135908:129..946+

>mRNA_H-elongata_contig135908.2532.1 ID=mRNA_H-elongata_contig135908.2532.1|Name=mRNA_H-elongata_contig135908.2532.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig135908:129..946+ (Himanthalia elongata Himel1 dioecious)
ATGCTACCCCTGCTGTGCGCGCAGACCATTGGTACCATCAGCCGTACCGT
TGGGTACCGCCTGGGGCGACACCTGGACTCCATCGTGCCGCTGTTCCTCA
AATTCTGCGGTGATCCCGACGACGAGAGCCAACACACGGAGGCCGCGGAC
GAGCTCAGAGAAAACTGCTTCCAGATGCTACCCCTGCTGTGCGCGCAGAC
CATTGGTACCATCAGCCGTACCGTTGGGTACCGCCTGGGGCGACACCTGG
ACTCCATCGTGCCGCTGTTCCTCAAATTCTGCGGTGATCCCGACGACGAG
AGCCAACACACGGAGGCCGCGGACGAGCTCAGAGAAAACTGCTTCCAGGG
CTTCGAGTCGTTCGTGGTGCGGTGTCCCCGCGAGGTTACGCCCCATCTCC
TCAAGATCATTAACGTGGCTCTCCAGTACATCAAGTACGATCCGAACTAC
AGCTACGGCGACGAGGATGATGGGAACAGCCAGGAGGATGTAGACATGGG
CGCCGAGGAAGACGAGGAGGGCTTCGAGTCGTTCGTGGTGCGGTGTCCCC
GCGAGGTTACGCCCCATCTCCTCAAGATCATTAACGTGGCTCTCCAGTAC
ATCAAGTACGATCCGAACTACAGCTACGGCGACGAGGATGATGGGAACAG
CCAGGAGGATGTAGACATGGGCGCCGAGGAAGACGAGGAG
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