mRNA_H-elongata_contig135846.2529.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig135846.2529.1
Unique Name	mRNA_H-elongata_contig135846.2529.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig135846.2529.1 vs. uniprot
Match: A0A6H5KTW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW4_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 6.320e-11
Identity = 49/118 (41.53%), Postives = 63/118 (53.39%), Query Frame = 1

Query:  211 YETRLRLLTLQGQWLEMEGRVMAERMTTTAGDGGRENTPSSDQAGAANSLGAAIASLEEAANLGNRLVSSPARVDATRGVPMTTSPLAECARTSGVVEAAGEATLRLAKLCEKLAIGD 564
            +ETRLRLLTLQGQWLE +G ++AE                     AA S  A++ASLE+A  LG+ L   P R   +     +    +    T G VEA GEA LRLAKLC+ ++ GD
Sbjct:   91 HETRLRLLTLQGQWLETKGHLLAENXXXXXXXXXX----------AAESFRASLASLEKATELGDSLTVRPPRSKLSPTPGSSDGNASGTTPTPGAVEATGEAMLRLAKLCDTMSAGD 198

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BLAST of mRNA_H-elongata_contig135846.2529.1 vs. uniprot
Match: D8LKP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP6_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 2.500e-10
Identity = 49/118 (41.53%), Postives = 63/118 (53.39%), Query Frame = 1

Query:  211 YETRLRLLTLQGQWLEMEGRVMAERMTTTAGDGGRENTPSSDQAGAANSLGAAIASLEEAANLGNRLVSSPARVDATRGVPMTTSPLAECARTSGVVEAAGEATLRLAKLCEKLAIGD 564
            +ETRLRLLTLQGQWLE +G ++AE                     AA S  A++ASLE+A  LG+ L   P     +     +T   +    T G VEA GEA LRLAKLC+ ++ GD
Sbjct:  987 HETRLRLLTLQGQWLETKGLLLAENXXXXXXXXXX----------AAESFCASLASLEKATELGDGLTVRPTGSKQSPTPGSSTGNASGTTPTPGAVEATGEAMLRLAKLCDAMSAGD 1094

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig135846.2529.1 vs. uniprot

BLAST of mRNA_H-elongata_contig135846.2529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KTW4_9PHAE	6.320e-11	41.53	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LKP6_ECTSI	2.500e-10	41.53	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig135846	contig	H-elongata_contig135846:277..1753 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	69.3
Seed ortholog evalue	2.2e-09
Seed eggNOG ortholog	2880.D8LKP6
KEGG ko	ko:K06642,ko:K07203,ko:K08873
KEGG Pathway	ko01521,ko01522,ko03015,ko03450,ko04012,ko04066,ko04072,ko04110,ko04136,ko04138,ko04139,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map03015,map03450,map04012,map04066,map04072,map04110,map04136,map04138,map04139,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
KEGG Module	M00297
EggNOG free text desc.	phosphatidylinositol kinase activity
EggNOG OGs	COG5032@1,KOG0891@2759
EC	2.7.11.1
COG Functional cat.	BDLTU
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03032,ko03400,ko04131
Hectar predicted targeting category	other localisation
Exons	3
Model size	583
Cds size	579
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig135846.2529.1	prot_H-elongata_contig135846.2529.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig135846 277..1751 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929806.3568437-CDS-H-elongata_contig135846:276..406	1622929806.3568437-CDS-H-elongata_contig135846:276..406	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig135846 277..406 +
1691679164.6485987-CDS-H-elongata_contig135846:276..406	1691679164.6485987-CDS-H-elongata_contig135846:276..406	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig135846 277..406 +
1622929806.3723314-CDS-H-elongata_contig135846:874..1044	1622929806.3723314-CDS-H-elongata_contig135846:874..1044	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig135846 875..1044 +
1691679164.6714394-CDS-H-elongata_contig135846:874..1044	1691679164.6714394-CDS-H-elongata_contig135846:874..1044	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig135846 875..1044 +
1622929806.395481-CDS-H-elongata_contig135846:1472..1751	1622929806.395481-CDS-H-elongata_contig135846:1472..1751	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig135846 1473..1751 +
1691679164.685274-CDS-H-elongata_contig135846:1472..1751	1691679164.685274-CDS-H-elongata_contig135846:1472..1751	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig135846 1473..1751 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig135846:277..1753+
coding sequence from alignment at H-elongata_contig135846:277..1753+

protein sequence of mRNA_H-elongata_contig135846.2529.1

>prot_H-elongata_contig135846.2529.1 ID=prot_H-elongata_contig135846.2529.1|Name=mRNA_H-elongata_contig135846.2529.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=193bp
NRADALEKRAATTSGVLRLINGTTRQQHAAMLEAEARRVAVAAGGSGEGG
DSGDVESGGGWGWKSEGAGAYETRLRLLTLQGQWLEMEGRVMAERMTTTA
GDGGRENTPSSDQAGAANSLGAAIASLEEAANLGNRLVSSPARVDATRGV
PMTTSPLAECARTSGVVEAAGEATLRLAKLCEKLAIGDGFVDA

mRNA from alignment at H-elongata_contig135846:277..1753+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig135846.2529.1 ID=mRNA_H-elongata_contig135846.2529.1|Name=mRNA_H-elongata_contig135846.2529.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1477bp|location=Sequence derived from alignment at H-elongata_contig135846:277..1753+ (Himanthalia elongata Himel1 dioecious)
AACAGAGCAGACGCGCTAGAGAAACGAGCGGCGACGACGTCAGGAGTTCT
CCGGTTGATCAACGGAACCACCCGGCAGCAGCACGCGGCTATGCTGGAAG
CCGAGGCACGGCGGGTCGCCGTAGCCGCAGGTACCAAGCGGAAGGTTTTA
TCGACACCGACTCTTACCTGACCGAGCTCGAAGGCTCACGCTCAGAGTAT
CGGTTGTTTCTCGTCGCTGCATTCACCTGAGTTTTCTGTTCTGCGCGAGG
AGCTCTGGGTGCGTCACTGTCTAGTATATTTTGCTTGATGGCGATAGGTT
CCGTGGGCCTGCAACGGGCACATTTCCGGGGGATTGGGGGGGGAGGGGAG
TTGAAGAGGGCAGGGTATCGCGTCAGCCTACCATCCACGTAACGGGCCAC
CAACGTAGGCGATGAAGAGCGTTCTCAACATTATCAAGAACGCCATGAAG
AACATTCTTGAGAACGTTCTCAACGAACATCATTTGAAAGCTGTTTTCCA
GGGGACGAACCTTCTCTTTCTCCCCTCGCCTGTCGAAGTAAACAGTATAT
CGTGTAGCGCATTGTAATGACACATTTATTCCCAACGCGCTTCGTAAGGT
GGCAGCGGCGAAGGAGGGGACAGCGGCGACGTCGAGTCGGGTGGAGGATG
GGGGTGGAAGTCCGAGGGTGCAGGAGCATACGAAACGAGGCTGCGATTGC
TGACACTGCAGGGCCAATGGCTCGAAATGGAGGGACGAGTGATGGCCGAA
CGGATGACTACCACCGCGGTGCGCACGAAAATCTTCAAGAGGGGGTCGGG
GCGTTTTACGATTTCTCGCCTAGTTTAACGAACAGCTCTAAAGGGGATTG
GGGATTTATATATATACTCTATATTGATATACATTCATGTACTTTACGAG
TTGATTCGTGCTCCAGAAACAGGATATCTACTCGCCTTCCCTTGCTAAAG
CATTGGTTCTCAAGGCGCTGGAGGCGTGTTTAGGACGGATTGCACGGCCT
TACTTCAACCCCCACCCCCAATGGTGTAACAGTTAAGGCATGCAAAACTT
GACCACGTCAACCCCCCTCCCCCCCCTCCCTCCTCCTATTTATGATAAGT
TATACAAACGTGATAAATACCCATCCCCATGACCAATTTGGGCCAAACGC
CACCCTCAAGAGCTCAAACGCCGACTAATCTACGGTCCATATACAGGGAG
ATGGAGGAAGAGAGAACACGCCTTCGTCCGATCAAGCAGGGGCGGCGAAT
AGCCTAGGTGCAGCCATCGCTAGCCTCGAAGAAGCGGCGAATCTCGGAAA
TCGCCTGGTCTCTTCCCCCGCCCGCGTGGATGCTACACGCGGGGTTCCCA
TGACAACCTCTCCTCTTGCCGAGTGCGCGAGGACGTCAGGCGTAGTAGAG
GCTGCCGGAGAAGCAACACTGAGGCTGGCCAAGCTGTGCGAGAAGTTGGC
CATTGGGGACGGATTTGTGGACGCCGG

Coding sequence (CDS) from alignment at H-elongata_contig135846:277..1753+

>mRNA_H-elongata_contig135846.2529.1 ID=mRNA_H-elongata_contig135846.2529.1|Name=mRNA_H-elongata_contig135846.2529.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1158bp|location=Sequence derived from alignment at H-elongata_contig135846:277..1753+ (Himanthalia elongata Himel1 dioecious)
AACAGAGCAGACGCGCTAGAGAAACGAGCGGCGACGACGTCAGGAGTTCT
CCGGTTGATCAACGGAACCACCCGGCAGCAGCACGCGGCTATGCTGGAAG
CCGAGGCACGGCGGGTCGCCGTAGCCGCAGAACAGAGCAGACGCGCTAGA
GAAACGAGCGGCGACGACGTCAGGAGTTCTCCGGTTGATCAACGGAACCA
CCCGGCAGCAGCACGCGGCTATGCTGGAAGCCGAGGCACGGCGGGTCGCC
GTAGCCGCAGGTGGCAGCGGCGAAGGAGGGGACAGCGGCGACGTCGAGTC
GGGTGGAGGATGGGGGTGGAAGTCCGAGGGTGCAGGAGCATACGAAACGA
GGCTGCGATTGCTGACACTGCAGGGCCAATGGCTCGAAATGGAGGGACGA
GTGATGGCCGAACGGATGACTACCACCGCGGTGGCAGCGGCGAAGGAGGG
GACAGCGGCGACGTCGAGTCGGGTGGAGGATGGGGGTGGAAGTCCGAGGG
TGCAGGAGCATACGAAACGAGGCTGCGATTGCTGACACTGCAGGGCCAAT
GGCTCGAAATGGAGGGACGAGTGATGGCCGAACGGATGACTACCACCGCG
GGAGATGGAGGAAGAGAGAACACGCCTTCGTCCGATCAAGCAGGGGCGGC
GAATAGCCTAGGTGCAGCCATCGCTAGCCTCGAAGAAGCGGCGAATCTCG
GAAATCGCCTGGTCTCTTCCCCCGCCCGCGTGGATGCTACACGCGGGGTT
CCCATGACAACCTCTCCTCTTGCCGAGTGCGCGAGGACGTCAGGCGTAGT
AGAGGCTGCCGGAGAAGCAACACTGAGGCTGGCCAAGCTGTGCGAGAAGT
TGGCCATTGGGGACGGATTTGTGGACGCCGGAGATGGAGGAAGAGAGAAC
ACGCCTTCGTCCGATCAAGCAGGGGCGGCGAATAGCCTAGGTGCAGCCAT
CGCTAGCCTCGAAGAAGCGGCGAATCTCGGAAATCGCCTGGTCTCTTCCC
CCGCCCGCGTGGATGCTACACGCGGGGTTCCCATGACAACCTCTCCTCTT
GCCGAGTGCGCGAGGACGTCAGGCGTAGTAGAGGCTGCCGGAGAAGCAAC
ACTGAGGCTGGCCAAGCTGTGCGAGAAGTTGGCCATTGGGGACGGATTTG
TGGACGCC