mRNA_H-elongata_contig13577.2526.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE) HSP 1 Score: 217 bits (553), Expect = 4.100e-66 Identity = 92/127 (72.44%), Postives = 107/127 (84.25%), Query Frame = 1
Query: 1 GHFEIFLCDTNDLDDPDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYFLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
GH E F+C+ D+ DPDGVVTQGCFNMHPLDRA+DDG ASPIDP++ GRY+LDP CR+ ETDQ LPGAYPGDV TARY+LPSG+TCSRCI+QM YYTGN+C HPGYD+F+P S P CAP K DW+
Sbjct: 214 GHLEFFICNAEDMSDPDGVVTQGCFNMHPLDRADDDGDASPIDPDHIGRYYLDPPCRAGETDQDTLPGAYPGDVATARYKLPSGLTCSRCILQMVYYTGNACKHPGYDEFDPVSVPDGCAPTKEDWV 340
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI) HSP 1 Score: 199 bits (507), Expect = 1.800e-60 Identity = 90/128 (70.31%), Postives = 102/128 (79.69%), Query Frame = 1
Query: 1 GHFEIFLCDTNDLDD-PDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYFLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
GH E+FLCD +DL D PD VVTQ CFN +PLDRAEDD SPIDP GR+ LDP CR++ETDQ +LPGA+ GDV TAR+QLP GVTC RC+VQM YYTGNSC H GY +FNP SWPS CAP+KADWI
Sbjct: 97 GHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWI 224
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI) HSP 1 Score: 199 bits (507), Expect = 2.040e-59 Identity = 90/128 (70.31%), Postives = 102/128 (79.69%), Query Frame = 1
Query: 1 GHFEIFLCDTNDLDD-PDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYFLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
GH E+FLCD +DL D PD VVTQ CFN +PLDRAEDD PIDP GR+ LDP CR++ETDQ +LPGA+ GDV TAR+QLP GVTC RC+VQMAYYTGNSC H GY +FNP SWPS CAP+KADWI
Sbjct: 146 GHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMAYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWI 273
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI) HSP 1 Score: 194 bits (494), Expect = 3.080e-57 Identity = 87/128 (67.97%), Postives = 98/128 (76.56%), Query Frame = 1
Query: 1 GHFEIFLCDTNDLDD-PDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYFLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
GH E FLCDT DL + D +VTQ CFN +PLDRA DD PIDP Y GR+ LDP CR++ETDQ ++ GAYPGDV TARYQLP GV C RC+VQM YYTGNSC H GY +FNP SWPS CAP+KADWI
Sbjct: 153 GHVEAFLCDTADLPEGEDSIVTQSCFNDYPLDRAIDDEFNGPIDPEYKGRFILDPPCRASETDQDLVEGAYPGDVATARYQLPEGVVCDRCVVQMVYYTGNSCKHEGYAEFNPESWPSSCAPSKADWI 280
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE) HSP 1 Score: 191 bits (485), Expect = 1.990e-56 Identity = 87/128 (67.97%), Postives = 100/128 (78.12%), Query Frame = 1
Query: 1 GHFEIFLCDTNDLDD-PDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYFLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
GH E+FLCD +DL D PD VVTQ CFN HPLDRAEDD PIDP GR+ LDP CR++ETDQ ++PGA+PGDV TAR+QLP GVTC RC+VQMAY+ NSC H GY +FNP SWP CAP+KADWI
Sbjct: 117 GHVEMFLCDADDLPDGPDSVVTQSCFNEHPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELVPGAFPGDVATARFQLPQGVTCERCVVQMAYW--NSCKHQGYAEFNPPSWPGSCAPSKADWI 242
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI) HSP 1 Score: 195 bits (496), Expect = 2.880e-56 Identity = 86/128 (67.19%), Postives = 99/128 (77.34%), Query Frame = 1
Query: 1 GHFEIFLCDTNDLDD-PDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYFLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
GH E+FLCD +DL PD VTQ CFN HPLDR +DD SPIDP+ GR+ LDP CR++ETDQ ML GA+PGDV TAR++LP G+TC RC+VQM YYTGNSC H GY +FNP SWPS CAP KADWI
Sbjct: 148 GHVEMFLCDADDLPGGPDSTVTQSCFNEHPLDRVDDDDFNSPIDPSNTGRFILDPPCRASETDQEMLDGAFPGDVATARFKLPQGLTCERCVVQMVYYTGNSCKHQGYAEFNPESWPSSCAPTKADWI 275
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI) HSP 1 Score: 185 bits (470), Expect = 1.630e-55 Identity = 81/128 (63.28%), Postives = 97/128 (75.78%), Query Frame = 1
Query: 1 GHFEIFLCDTNDLDD-PDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYFLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
GH E+FLC+ +L PD VTQ CFN HPLDRA+DD P DP+ GR+ LDP CR++ETDQ +L GAYP DV TAR++LP G++C RC+VQM YYTGNSC H GY +FNP SWPS CAP+KADWI
Sbjct: 149 GHVEMFLCNAANLPGGPDSTVTQSCFNEHPLDRADDDEFNGPADPDNTGRFILDPPCRASETDQALLDGAYPSDVATARFKLPQGLSCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWI 276
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Match: A0A6H5KTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE) HSP 1 Score: 195 bits (495), Expect = 1.840e-55 Identity = 86/128 (67.19%), Postives = 99/128 (77.34%), Query Frame = 1
Query: 1 GHFEIFLCDTNDLDD-PDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYFLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
GH E+FLCD NDL PD VTQ CFN HPLDR +DD SPIDP+ GR+ LDP CR++ETDQ +L GA+PGDV TAR++LP GV+C RC+VQM YYTGNSC H GY +FNP SWPS CAP KADWI
Sbjct: 148 GHVEMFLCDANDLPGGPDSTVTQSCFNEHPLDRVDDDYFNSPIDPSNTGRFILDPPCRASETDQELLDGAFPGDVATARFKLPEGVSCERCVVQMVYYTGNSCKHQGYAEFNPDSWPSSCAPTKADWI 275
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI) HSP 1 Score: 185 bits (469), Expect = 5.830e-55 Identity = 79/127 (62.20%), Postives = 94/127 (74.02%), Query Frame = 1
Query: 1 GHFEIFLCDTNDLDDPDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYFLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
GH E F+C+ ++++DPDG+ Q CFN +PL RAE D SPIDPNYPGRY++DP CR ETDQT GA G V+ A YQLP G+TC RCI+QM YYTGNSC H GY++F P SWPS CAP K DWI
Sbjct: 125 GHVEFFICNADEMEDPDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLPEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWI 251
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI) HSP 1 Score: 184 bits (466), Expect = 1.580e-53 Identity = 81/127 (63.78%), Postives = 97/127 (76.38%), Query Frame = 1
Query: 1 GHFEIFLCDTNDLDDPDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYFLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
GH E F+C+T+D+DDPDGV TQ CFNMHPL RA+DDG ASPIDPNYPGRY++DP CR ET+Q+ + G + RY LP + C CI+QM YYTGN+C H GY++FNPTSWPS CAPNK DWI
Sbjct: 154 GHCEFFVCNTDDMDDPDGVPTQECFNMHPLTRADDDGDASPIDPNYPGRYYVDPECREEETEQSS--NSIEGYNIKMRYVLPD-IECEHCILQMVYYTGNTCKHIGYEEFNPTSWPSSCAPNKWDWI 277 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13577.2526.1 >prot_H-elongata_contig13577.2526.1 ID=prot_H-elongata_contig13577.2526.1|Name=mRNA_H-elongata_contig13577.2526.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp GHFEIFLCDTNDLDDPDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYback to top mRNA from alignment at H-elongata_contig13577:6945..7702- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13577.2526.1 ID=mRNA_H-elongata_contig13577.2526.1|Name=mRNA_H-elongata_contig13577.2526.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=758bp|location=Sequence derived from alignment at H-elongata_contig13577:6945..7702- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13577:6945..7702- >mRNA_H-elongata_contig13577.2526.1 ID=mRNA_H-elongata_contig13577.2526.1|Name=mRNA_H-elongata_contig13577.2526.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig13577:6945..7702- (Himanthalia elongata Himel1 dioecious)back to top |