mRNA_H-elongata_contig13577.2526.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13577.2526.1
Unique NamemRNA_H-elongata_contig13577.2526.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 4.100e-66
Identity = 92/127 (72.44%), Postives = 107/127 (84.25%), Query Frame = 1
Query:    1 GHFEIFLCDTNDLDDPDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYFLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
            GH E F+C+  D+ DPDGVVTQGCFNMHPLDRA+DDG ASPIDP++ GRY+LDP CR+ ETDQ  LPGAYPGDV TARY+LPSG+TCSRCI+QM YYTGN+C HPGYD+F+P S P  CAP K DW+
Sbjct:  214 GHLEFFICNAEDMSDPDGVVTQGCFNMHPLDRADDDGDASPIDPDHIGRYYLDPPCRAGETDQDTLPGAYPGDVATARYKLPSGLTCSRCILQMVYYTGNACKHPGYDEFDPVSVPDGCAPTKEDWV 340          
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 1.800e-60
Identity = 90/128 (70.31%), Postives = 102/128 (79.69%), Query Frame = 1
Query:    1 GHFEIFLCDTNDLDD-PDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYFLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
            GH E+FLCD +DL D PD VVTQ CFN +PLDRAEDD   SPIDP   GR+ LDP CR++ETDQ +LPGA+ GDV TAR+QLP GVTC RC+VQM YYTGNSC H GY +FNP SWPS CAP+KADWI
Sbjct:   97 GHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWI 224          
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 2.040e-59
Identity = 90/128 (70.31%), Postives = 102/128 (79.69%), Query Frame = 1
Query:    1 GHFEIFLCDTNDLDD-PDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYFLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
            GH E+FLCD +DL D PD VVTQ CFN +PLDRAEDD    PIDP   GR+ LDP CR++ETDQ +LPGA+ GDV TAR+QLP GVTC RC+VQMAYYTGNSC H GY +FNP SWPS CAP+KADWI
Sbjct:  146 GHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMAYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWI 273          
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 3.080e-57
Identity = 87/128 (67.97%), Postives = 98/128 (76.56%), Query Frame = 1
Query:    1 GHFEIFLCDTNDLDD-PDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYFLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
            GH E FLCDT DL +  D +VTQ CFN +PLDRA DD    PIDP Y GR+ LDP CR++ETDQ ++ GAYPGDV TARYQLP GV C RC+VQM YYTGNSC H GY +FNP SWPS CAP+KADWI
Sbjct:  153 GHVEAFLCDTADLPEGEDSIVTQSCFNDYPLDRAIDDEFNGPIDPEYKGRFILDPPCRASETDQDLVEGAYPGDVATARYQLPEGVVCDRCVVQMVYYTGNSCKHEGYAEFNPESWPSSCAPSKADWI 280          
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 1.990e-56
Identity = 87/128 (67.97%), Postives = 100/128 (78.12%), Query Frame = 1
Query:    1 GHFEIFLCDTNDLDD-PDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYFLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
            GH E+FLCD +DL D PD VVTQ CFN HPLDRAEDD    PIDP   GR+ LDP CR++ETDQ ++PGA+PGDV TAR+QLP GVTC RC+VQMAY+  NSC H GY +FNP SWP  CAP+KADWI
Sbjct:  117 GHVEMFLCDADDLPDGPDSVVTQSCFNEHPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELVPGAFPGDVATARFQLPQGVTCERCVVQMAYW--NSCKHQGYAEFNPPSWPGSCAPSKADWI 242          
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 2.880e-56
Identity = 86/128 (67.19%), Postives = 99/128 (77.34%), Query Frame = 1
Query:    1 GHFEIFLCDTNDLDD-PDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYFLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
            GH E+FLCD +DL   PD  VTQ CFN HPLDR +DD   SPIDP+  GR+ LDP CR++ETDQ ML GA+PGDV TAR++LP G+TC RC+VQM YYTGNSC H GY +FNP SWPS CAP KADWI
Sbjct:  148 GHVEMFLCDADDLPGGPDSTVTQSCFNEHPLDRVDDDDFNSPIDPSNTGRFILDPPCRASETDQEMLDGAFPGDVATARFKLPQGLTCERCVVQMVYYTGNSCKHQGYAEFNPESWPSSCAPTKADWI 275          
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 1.630e-55
Identity = 81/128 (63.28%), Postives = 97/128 (75.78%), Query Frame = 1
Query:    1 GHFEIFLCDTNDLDD-PDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYFLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
            GH E+FLC+  +L   PD  VTQ CFN HPLDRA+DD    P DP+  GR+ LDP CR++ETDQ +L GAYP DV TAR++LP G++C RC+VQM YYTGNSC H GY +FNP SWPS CAP+KADWI
Sbjct:  149 GHVEMFLCNAANLPGGPDSTVTQSCFNEHPLDRADDDEFNGPADPDNTGRFILDPPCRASETDQALLDGAYPSDVATARFKLPQGLSCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWI 276          
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Match: A0A6H5KTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.840e-55
Identity = 86/128 (67.19%), Postives = 99/128 (77.34%), Query Frame = 1
Query:    1 GHFEIFLCDTNDLDD-PDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYFLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
            GH E+FLCD NDL   PD  VTQ CFN HPLDR +DD   SPIDP+  GR+ LDP CR++ETDQ +L GA+PGDV TAR++LP GV+C RC+VQM YYTGNSC H GY +FNP SWPS CAP KADWI
Sbjct:  148 GHVEMFLCDANDLPGGPDSTVTQSCFNEHPLDRVDDDYFNSPIDPSNTGRFILDPPCRASETDQELLDGAFPGDVATARFKLPEGVSCERCVVQMVYYTGNSCKHQGYAEFNPDSWPSSCAPTKADWI 275          
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 5.830e-55
Identity = 79/127 (62.20%), Postives = 94/127 (74.02%), Query Frame = 1
Query:    1 GHFEIFLCDTNDLDDPDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYFLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
            GH E F+C+ ++++DPDG+  Q CFN +PL RAE D   SPIDPNYPGRY++DP CR  ETDQT   GA  G V+ A YQLP G+TC RCI+QM YYTGNSC H GY++F P SWPS CAP K DWI
Sbjct:  125 GHVEFFICNADEMEDPDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLPEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWI 251          
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 1.580e-53
Identity = 81/127 (63.78%), Postives = 97/127 (76.38%), Query Frame = 1
Query:    1 GHFEIFLCDTNDLDDPDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRYFLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGNSCMHPGYDDFNPTSWPSECAPNKADWI 381
            GH E F+C+T+D+DDPDGV TQ CFNMHPL RA+DDG ASPIDPNYPGRY++DP CR  ET+Q+    +  G  +  RY LP  + C  CI+QM YYTGN+C H GY++FNPTSWPS CAPNK DWI
Sbjct:  154 GHCEFFVCNTDDMDDPDGVPTQECFNMHPLTRADDDGDASPIDPNYPGRYYVDPECREEETEQSS--NSIEGYNIKMRYVLPD-IECEHCILQMVYYTGNTCKHIGYEEFNPTSWPSSCAPNKWDWI 277          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13577.2526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI36_9PHAE4.100e-6672.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FP25_ECTSI1.800e-6070.31EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LD67_ECTSI2.040e-5970.31EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LMF4_ECTSI3.080e-5767.97EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
A0A6H5KD35_9PHAE1.990e-5667.97CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LM92_ECTSI2.880e-5667.19EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LM93_ECTSI1.630e-5563.28EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KTY6_9PHAE1.840e-5567.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4D7_ECTSI5.830e-5562.20EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LMS9_ECTSI1.580e-5363.78EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13577contigH-elongata_contig13577:6945..7702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.9
Seed ortholog evalue6.6e-55
Seed eggNOG ortholog2880.D7FSZ8
EggNOG free text desc.Fungal-type cellulose-binding domain
EggNOG OGs2CZUJ@1,2SBQR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929806.1489158-CDS-H-elongata_contig13577:6944..70361622929806.1489158-CDS-H-elongata_contig13577:6944..7036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13577 6945..7036 -
1691679164.5820484-CDS-H-elongata_contig13577:6944..70361691679164.5820484-CDS-H-elongata_contig13577:6944..7036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13577 6945..7036 -
1622929806.1686242-CDS-H-elongata_contig13577:7413..77021622929806.1686242-CDS-H-elongata_contig13577:7413..7702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13577 7414..7702 -
1691679164.5970552-CDS-H-elongata_contig13577:7413..77021691679164.5970552-CDS-H-elongata_contig13577:7413..7702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13577 7414..7702 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13577.2526.1prot_H-elongata_contig13577.2526.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13577 6945..7702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13577.2526.1

>prot_H-elongata_contig13577.2526.1 ID=prot_H-elongata_contig13577.2526.1|Name=mRNA_H-elongata_contig13577.2526.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
GHFEIFLCDTNDLDDPDGVVTQGCFNMHPLDRAEDDGGASPIDPNYPGRY
FLDPTCRSTETDQTMLPGAYPGDVVTARYQLPSGVTCSRCIVQMAYYTGN
SCMHPGYDDFNPTSWPSECAPNKADWI
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mRNA from alignment at H-elongata_contig13577:6945..7702-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13577.2526.1 ID=mRNA_H-elongata_contig13577.2526.1|Name=mRNA_H-elongata_contig13577.2526.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=758bp|location=Sequence derived from alignment at H-elongata_contig13577:6945..7702- (Himanthalia elongata Himel1 dioecious)
GGCCATTTTGAAATCTTCCTCTGTGACACTAATGATCTGGATGACCCAGA CGGTGTGGTAACCCAAGGGTGTTTCAACATGCACCCGTTGGATCGAGCGG AGGACGACGGAGGCGCGTCGCCCATCGACCCCAATTACCCGGGAAGATAC TTCCTTGACCCCACCTGCAGGTCTACGGAAACGGACCAGACTATGCTTCC TGGTGCCTACCCTGGCGATGTCGTCACGGCTCGGTACCAGCTCCCGTCGG GCGTCACTTGTTCTCGCTGCATCGTGCAGATGGCGTACTGTAAGTAATAT GTGGCTTTAGTATCTCAACTGCCGATATTGCCATGAACTCCCCATCGTTT AGTGGGTGGGTCGGCACGAGTTAGAGCCCAGAATATTGAAGATAATACTC GGGACGTGTTCCAAACCCATGTGAAGAAAATAATTAGTTTTTGTAGGAAC TACTATTGAGCGAATGATTAATGGCAAGCAAGATCAAGCTATGATTGTCG CCCAAGCAGTTCCTGGAACCATCCTTCTTGTTCGACACGGCCTTAACGGT CATAGTATAATATATTTCTGTTTTCCACGCGCTCCACCTGCGCACCAGGT AATTGTCGCTATCGAGGACATTACCTCGAGCAACATTAATCGTACCATCG TTTACCTTTGACACAGATACCGGCAATTCATGCATGCACCCGGGTTACGA TGACTTCAACCCTACTTCCTGGCCCAGCGAATGCGCCCCGAACAAAGCAG ACTGGATC
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Coding sequence (CDS) from alignment at H-elongata_contig13577:6945..7702-

>mRNA_H-elongata_contig13577.2526.1 ID=mRNA_H-elongata_contig13577.2526.1|Name=mRNA_H-elongata_contig13577.2526.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig13577:6945..7702- (Himanthalia elongata Himel1 dioecious)
GGCCATTTTGAAATCTTCCTCTGTGACACTAATGATCTGGATGACCCAGA
CGGTGTGGTAACCCAAGGGTGTTTCAACATGCACCCGTTGGATCGAGCGG
AGGACGACGGAGGCGCGTCGCCCATCGACCCCAATTACCCGGGAAGATAC
TTCCTTGACCCCACCTGCAGGTCTACGGAAACGGACCAGACTATGCTTCC
TGGTGCCTACCCTGGCGATGTCGTCACGGCTCGGTACCAGCTCCCGTCGG
GCGTCACTTGTTCTCGCTGCATCGTGCAGATGGCGTACTGGCCATTTTGA
AATCTTCCTCTGTGACACTAATGATCTGGATGACCCAGACGGTGTGGTAA
CCCAAGGGTGTTTCAACATGCACCCGTTGGATCGAGCGGAGGACGACGGA
GGCGCGTCGCCCATCGACCCCAATTACCCGGGAAGATACTTCCTTGACCC
CACCTGCAGGTCTACGGAAACGGACCAGACTATGCTTCCTGGTGCCTACC
CTGGCGATGTCGTCACGGCTCGGTACCAGCTCCCGTCGGGCGTCACTTGT
TCTCGCTGCATCGTGCAGATGGCGTACTATACCGGCAATTCATGCATGCA
CCCGGGTTACGATGACTTCAACCCTACTTCCTGGCCCAGCGAATGCGCCC
CGAACAAAGCAGACTGGATCATACCGGCAATTCATGCATGCACCCGGGTT
ACGATGACTTCAACCCTACTTCCTGGCCCAGCGAATGCGCCCCGAACAAA
GCAGACTGGATC
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