mRNA_H-elongata_contig135643.2521.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135643.2521.1
Unique NamemRNA_H-elongata_contig135643.2521.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig135643.2521.1 vs. uniprot
Match: A0A6H5L9A9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9A9_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.530e-9
Identity = 35/95 (36.84%), Postives = 51/95 (53.68%), Query Frame = 1 
Query:    7 RLWTDNHHNACHVLNRTATTPNEGSMSPYQKFFGEKPPPTLIQWMEPCFYKVKRKRKMDEQTKPGFYLGPARNHPRDTFRIYAQETDEIVTSRDV 291
            RLW  +   A    NR+AT  N+G MSP++ FFG KPP T++ + +    +VKR  K D Q+   FYL  A NH   T  +   +T  +  + +V
Sbjct:   31 RLWLSSALWASGCFNRSATKANQGWMSPFEAFFGRKPPLTVVPFFQEGRMRVKRATKADVQSARCFYLHGANNHSTSTAVVLRADTGRLALTNNV 125
[Close]
BLAST of mRNA_H-elongata_contig135643.2521.1 vs. uniprot
Match: A0A6H5JD95_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD95_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.630e-9
Identity = 35/95 (36.84%), Postives = 51/95 (53.68%), Query Frame = 1 
Query:    7 RLWTDNHHNACHVLNRTATTPNEGSMSPYQKFFGEKPPPTLIQWMEPCFYKVKRKRKMDEQTKPGFYLGPARNHPRDTFRIYAQETDEIVTSRDV 291
            RLW  +   A    NR+AT  N+G MSP++ FFG KPP T++ + +    +VKR  K D Q+   FYL  A NH   T  +   +T  +  + +V
Sbjct:  248 RLWLSSALWASGCFNRSATKANQGWMSPFEAFFGRKPPLTVVPFFQEGRMRVKRATKADVQSARCFYLHGANNHSTSTAVVLRADTGRLALTNNV 342
[Close]
BLAST of mRNA_H-elongata_contig135643.2521.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.700e-9
Identity = 35/95 (36.84%), Postives = 51/95 (53.68%), Query Frame = 1 
Query:    7 RLWTDNHHNACHVLNRTATTPNEGSMSPYQKFFGEKPPPTLIQWMEPCFYKVKRKRKMDEQTKPGFYLGPARNHPRDTFRIYAQETDEIVTSRDV 291
            RLW  +   A    NR+AT  N+G MSP++ FFG KPP T++ + +    +VKR  K D Q+   FYL  A NH   T  +   +T  +  + +V
Sbjct: 1219 RLWLSSALWASGCFNRSATKANQGWMSPFEAFFGRKPPLTVVPFFQEGRMRVKRATKADVQSARCFYLHGANNHSTSTAVVLRADTGRLALTNNV 1313
[Close]
BLAST of mRNA_H-elongata_contig135643.2521.1 vs. uniprot
Match: A0A6H5JS38_9PHAE (Integrase catalytic domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS38_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.700e-9
Identity = 35/95 (36.84%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:    7 RLWTDNHHNACHVLNRTATTPNEGSMSPYQKFFGEKPPPTLIQWMEPCFYKVKRKRKMDEQTKPGFYLGPARNHPRDTFRIYAQETDEIVTSRDV 291
            RLW  +   A    NR+AT  N G MSP++ FFG KPP T++ + +    +VKR  K D Q+   FYL  A NH   T  +   +T  +  + +V
Sbjct:  290 RLWLASALWASACFNRSATKANLGWMSPFEAFFGRKPPLTVVPFFQEGMMRVKRATKADVQSARCFYLHGANNHSTSTAVVLRADTGRLALTNNV 384
[Close]
BLAST of mRNA_H-elongata_contig135643.2521.1 vs. uniprot
Match: A0A6H5JGN6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGN6_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 9.990e-9
Identity = 35/95 (36.84%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:    7 RLWTDNHHNACHVLNRTATTPNEGSMSPYQKFFGEKPPPTLIQWMEPCFYKVKRKRKMDEQTKPGFYLGPARNHPRDTFRIYAQETDEIVTSRDV 291
            RLW  +   A    NR+AT  N G MSP++ FFG KPP T++ + +    +VKR  K D Q+   FYL  A NH   T  +   +T  +  + +V
Sbjct:  124 RLWLASALWASACFNRSATKANLGWMSPFEAFFGRKPPLTVVPFFQEGVMRVKRATKADIQSARCFYLHGANNHSTSTAVVLRADTGRLALTNNV 218
[Close]
BLAST of mRNA_H-elongata_contig135643.2521.1 vs. uniprot
Match: A0A6H5KIN4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIN4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.070e-8
Identity = 36/95 (37.89%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:    7 RLWTDNHHNACHVLNRTATTPNEGSMSPYQKFFGEKPPPTLIQWMEPCFYKVKRKRKMDEQTKPGFYLGPARNHPRDTFRIYAQETDEIVTSRDV 291
            RLW  +   A    NR+AT+ N   MSP++ FFG KPP  ++ + +    +VKR  K D Q+   FYL  ARNH   T  +   +T  I  S +V
Sbjct:  524 RLWLASAIWASSCFNRSATSANPAWMSPFEAFFGRKPPLKVVPFFQEGMMRVKRASKADVQSVRCFYLHGARNHSDATAVVLRADTGRICLSNNV 618
[Close]
BLAST of mRNA_H-elongata_contig135643.2521.1 vs. uniprot
Match: A0A6H5JL11_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL11_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.290e-8
Identity = 36/95 (37.89%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:    7 RLWTDNHHNACHVLNRTATTPNEGSMSPYQKFFGEKPPPTLIQWMEPCFYKVKRKRKMDEQTKPGFYLGPARNHPRDTFRIYAQETDEIVTSRDV 291
            RLW  +   A    NR+AT+ N   MSP++ FFG KPP  ++ + +    +VKR  K D Q+   FYL  ARNH   T  +   +T  I  S +V
Sbjct:  248 RLWLASAIWASGCFNRSATSANPAWMSPFEAFFGRKPPLKVVPFFQEGMMRVKRASKADVQSVRCFYLHGARNHSDATAVVLRADTGRICLSNNV 342
[Close]
BLAST of mRNA_H-elongata_contig135643.2521.1 vs. uniprot
Match: A0A6H5L7I6_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7I6_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.410e-8
Identity = 36/95 (37.89%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:    7 RLWTDNHHNACHVLNRTATTPNEGSMSPYQKFFGEKPPPTLIQWMEPCFYKVKRKRKMDEQTKPGFYLGPARNHPRDTFRIYAQETDEIVTSRDV 291
            RLW  +   A    NR+AT+ N   MSP++ FFG KPP  ++ + +    +VKR  K D Q+   FYL  ARNH   T  +   +T  I  S +V
Sbjct:  183 RLWLASAIWASGCFNRSATSANPAWMSPFEAFFGRKPPLKVVPFFQEGMMRVKRASKADVQSVRCFYLHGARNHSDATAVVLRADTGRICLSNNV 277
[Close]
BLAST of mRNA_H-elongata_contig135643.2521.1 vs. uniprot
Match: A0A6H5K690_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K690_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.450e-8
Identity = 36/95 (37.89%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:    7 RLWTDNHHNACHVLNRTATTPNEGSMSPYQKFFGEKPPPTLIQWMEPCFYKVKRKRKMDEQTKPGFYLGPARNHPRDTFRIYAQETDEIVTSRDV 291
            RLW  +   A    NR+AT+ N   MSP++ FFG KPP  ++ + +    +VKR  K D Q+   FYL  ARNH   T  +   +T  I  S +V
Sbjct:  445 RLWLASAIWASGCFNRSATSANPAWMSPFEAFFGRKPPLKVVPFFQEGMMRVKRASKADVQSVRCFYLHGARNHSDATAVVLRADTGRICLSNNV 539
[Close]
BLAST of mRNA_H-elongata_contig135643.2521.1 vs. uniprot
Match: A0A6H5J9R8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9R8_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.450e-8
Identity = 36/95 (37.89%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:    7 RLWTDNHHNACHVLNRTATTPNEGSMSPYQKFFGEKPPPTLIQWMEPCFYKVKRKRKMDEQTKPGFYLGPARNHPRDTFRIYAQETDEIVTSRDV 291
            RLW  +   A    NR+AT+ N   MSP++ FFG KPP  ++ + +    +VKR  K D Q+   FYL  ARNH   T  +   +T  I  S +V
Sbjct:  301 RLWLASAIWASGCFNRSATSANPAWMSPFEAFFGRKPPLKVVPFFQEGMMRVKRASKADVQSVRCFYLHGARNHSDATAVVLRADTGRICLSNNV 395
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135643.2521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9A9_9PHAE1.530e-936.84Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JD95_9PHAE1.630e-936.84Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3I1_9PHAE1.700e-936.84Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5JS38_9PHAE5.700e-936.84Integrase catalytic domain-containing protein n=4 ... [more]
A0A6H5JGN6_9PHAE9.990e-936.84Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KIN4_9PHAE1.070e-837.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JL11_9PHAE1.290e-837.89Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5L7I6_9PHAE1.410e-837.89Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K690_9PHAE1.450e-837.89Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5J9R8_9PHAE1.450e-837.89Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135643contigH-elongata_contig135643:74..364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929805.6127613-CDS-H-elongata_contig135643:73..3641622929805.6127613-CDS-H-elongata_contig135643:73..364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135643 74..364 +
1691679164.391994-CDS-H-elongata_contig135643:73..3641691679164.391994-CDS-H-elongata_contig135643:73..364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135643 74..364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135643.2521.1prot_H-elongata_contig135643.2521.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135643 74..364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135643.2521.1

>prot_H-elongata_contig135643.2521.1 ID=prot_H-elongata_contig135643.2521.1|Name=mRNA_H-elongata_contig135643.2521.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MDRLWTDNHHNACHVLNRTATTPNEGSMSPYQKFFGEKPPPTLIQWMEPC
FYKVKRKRKMDEQTKPGFYLGPARNHPRDTFRIYAQETDEIVTSRDV
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mRNA from alignment at H-elongata_contig135643:74..364+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135643.2521.1 ID=mRNA_H-elongata_contig135643.2521.1|Name=mRNA_H-elongata_contig135643.2521.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=291bp|location=Sequence derived from alignment at H-elongata_contig135643:74..364+ (Himanthalia elongata Himel1 dioecious)
ATGGACCGTCTGTGGACGGACAACCATCACAATGCTTGCCATGTACTCAA
CCGCACGGCAACTACGCCGAACGAGGGCTCTATGTCTCCTTACCAGAAGT
TCTTTGGTGAGAAACCCCCACCTACGCTAATCCAGTGGATGGAGCCGTGT
TTCTACAAGGTGAAGCGCAAGCGCAAGATGGACGAGCAGACCAAGCCGGG
ATTTTACCTCGGTCCGGCCCGCAACCATCCCCGCGACACATTTCGCATTT
ACGCGCAAGAGACGGATGAAATTGTCACCTCTCGTGATGTC
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Coding sequence (CDS) from alignment at H-elongata_contig135643:74..364+

>mRNA_H-elongata_contig135643.2521.1 ID=mRNA_H-elongata_contig135643.2521.1|Name=mRNA_H-elongata_contig135643.2521.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig135643:74..364+ (Himanthalia elongata Himel1 dioecious)
ATGGACCGTCTGTGGACGGACAACCATCACAATGCTTGCCATGTACTCAA
CCGCACGGCAACTACGCCGAACGAGGGCTCTATGTCTCCTTACCAGAAGT
TCTTTGGTGAGAAACCCCCACCTACGCTAATCCAGTGGATGGAGCCGTGT
TTCTACAAGGTGAAGCGCAAGCGCAAGATGGACGAGCAGACCAAGCCGGG
ATTTTACCTCGGTCCGGCCCGCAACCATCCCCGCGACACATTTCGCATTT
ACGCGCAAGAGACGGATGAAATTGTCACCTCTCGTGATGTCATGGACCGT
CTGTGGACGGACAACCATCACAATGCTTGCCATGTACTCAACCGCACGGC
AACTACGCCGAACGAGGGCTCTATGTCTCCTTACCAGAAGTTCTTTGGTG
AGAAACCCCCACCTACGCTAATCCAGTGGATGGAGCCGTGTTTCTACAAG
GTGAAGCGCAAGCGCAAGATGGACGAGCAGACCAAGCCGGGATTTTACCT
CGGTCCGGCCCGCAACCATCCCCGCGACACATTTCGCATTTACGCGCAAG
AGACGGATGAAATTGTCACCTCTCGTGATGTC
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