mRNA_H-elongata_contig135601.2520.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig135601.2520.1
Unique NamemRNA_H-elongata_contig135601.2520.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig135601.2520.1 vs. uniprot
Match: A0A6H5KK65_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK65_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.450e-42
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:    1 LGNVCLYGATSGNAFFRGKAGERFCVRNSGALAVVEGVGDHGCEYMTGGNMVCLGPTGRNFAAGMSGGIAWIYDPK 228
            +GNVCLYGATSGNAFFRG AGERFCVRNSGALAVVEGVGDHGCEYMTGGNMVCLGPTGRNFAAGMSGG AWIYDP+
Sbjct:  279 VGNVCLYGATSGNAFFRGLAGERFCVRNSGALAVVEGVGDHGCEYMTGGNMVCLGPTGRNFAAGMSGGTAWIYDPE 354
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BLAST of mRNA_H-elongata_contig135601.2520.1 vs. uniprot
Match: D8LCE0_ECTSI (Glutamate synthase (NADH/NADPH-dependent), C-terminal part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCE0_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 1.460e-42
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:    1 LGNVCLYGATSGNAFFRGKAGERFCVRNSGALAVVEGVGDHGCEYMTGGNMVCLGPTGRNFAAGMSGGIAWIYDPK 228
            +GNVCLYGATSGNAFFRG AGERFCVRNSGALAVVEGVGDHGCEYMTGGNMVCLGPTGRNFAAGMSGG AWIYDP+
Sbjct: 1116 VGNVCLYGATSGNAFFRGLAGERFCVRNSGALAVVEGVGDHGCEYMTGGNMVCLGPTGRNFAAGMSGGTAWIYDPE 1191
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BLAST of mRNA_H-elongata_contig135601.2520.1 vs. uniprot
Match: A0A7S3AY96_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AY96_9EUKA)

HSP 1 Score: 141 bits (356), Expect = 1.120e-40
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = 1 
Query:    1 LGNVCLYGATSGNAFFRGKAGERFCVRNSGALAVVEGVGDHGCEYMTGGNMVCLGPTGRNFAAGMSGGIAWIYDPK 228
            +GNV LYGATSG+AFFRGK GERFCVRNSGALAVVEG+GDHGCEYMTGG MVCLG TG NFAAGMSGGIA+IYDP+
Sbjct:  105 VGNVALYGATSGSAFFRGKGGERFCVRNSGALAVVEGIGDHGCEYMTGGRMVCLGETGINFAAGMSGGIAYIYDPQ 180
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BLAST of mRNA_H-elongata_contig135601.2520.1 vs. uniprot
Match: A0A7S1GQI6_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GQI6_CYCTE)

HSP 1 Score: 147 bits (370), Expect = 5.250e-40
Identity = 68/76 (89.47%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:    1 LGNVCLYGATSGNAFFRGKAGERFCVRNSGALAVVEGVGDHGCEYMTGGNMVCLGPTGRNFAAGMSGGIAWIYDPK 228
            +GNVCLYGATSG AFFRGKAGERFCVRNSGALAV+EGVGDHGCEYMTGG +VCLG TGRNFAAGMSGGIA+IYDP+
Sbjct:  424 VGNVCLYGATSGKAFFRGKAGERFCVRNSGALAVIEGVGDHGCEYMTGGAVVCLGETGRNFAAGMSGGIAYIYDPE 499
[Close]
BLAST of mRNA_H-elongata_contig135601.2520.1 vs. uniprot
Match: A0A835YLR4_9STRA (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR4_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.850e-39
Identity = 67/76 (88.16%), Postives = 72/76 (94.74%), Query Frame = 1 
Query:    1 LGNVCLYGATSGNAFFRGKAGERFCVRNSGALAVVEGVGDHGCEYMTGGNMVCLGPTGRNFAAGMSGGIAWIYDPK 228
            +GN CLYGATSG AF RG+AGERFCVRNSGALAVVEGVGDHGCEYMTGG MVCLGPTGRNFAAGMSGGIA++YDP+
Sbjct: 1403 VGNTCLYGATSGKAFLRGRAGERFCVRNSGALAVVEGVGDHGCEYMTGGEMVCLGPTGRNFAAGMSGGIAYVYDPE 1478
[Close]
BLAST of mRNA_H-elongata_contig135601.2520.1 vs. uniprot
Match: A0A448ZBQ4_9STRA (Glutamine amidotransferase type-2 domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448ZBQ4_9STRA)

HSP 1 Score: 146 bits (368), Expect = 4.690e-39
Identity = 68/76 (89.47%), Postives = 72/76 (94.74%), Query Frame = 1 
Query:    1 LGNVCLYGATSGNAFFRGKAGERFCVRNSGALAVVEGVGDHGCEYMTGGNMVCLGPTGRNFAAGMSGGIAWIYDPK 228
            +GNVCLYGATSG AFF GKAGERFCVRNSGALAVVEGVGDHGCEYMTGG MVCLG TGRNFAAGMSGGIA++YDP+
Sbjct: 1309 VGNVCLYGATSGKAFFNGKAGERFCVRNSGALAVVEGVGDHGCEYMTGGVMVCLGETGRNFAAGMSGGIAYVYDPE 1384
[Close]
BLAST of mRNA_H-elongata_contig135601.2520.1 vs. uniprot
Match: A0A1Z5KJI0_FISSO (Glutamate synthase (NADPH/NADH) n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJI0_FISSO)

HSP 1 Score: 145 bits (367), Expect = 6.400e-39
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 LGNVCLYGATSGNAFFRGKAGERFCVRNSGALAVVEGVGDHGCEYMTGGNMVCLGPTGRNFAAGMSGGIAWIYDP 225
            +GNVCLYGAT+G AFFRGKAGERFCVRNSGALAVVEG+GDHGCEYMTGG MVCLG TGRNF AGMSGGIA+IYDP
Sbjct: 1483 VGNVCLYGATAGKAFFRGKAGERFCVRNSGALAVVEGIGDHGCEYMTGGRMVCLGETGRNFGAGMSGGIAYIYDP 1557
[Close]
BLAST of mRNA_H-elongata_contig135601.2520.1 vs. uniprot
Match: A0A7S3KXA2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KXA2_9STRA)

HSP 1 Score: 145 bits (366), Expect = 8.730e-39
Identity = 67/76 (88.16%), Postives = 72/76 (94.74%), Query Frame = 1 
Query:    1 LGNVCLYGATSGNAFFRGKAGERFCVRNSGALAVVEGVGDHGCEYMTGGNMVCLGPTGRNFAAGMSGGIAWIYDPK 228
            +GNVCLYGAT+G AFFRGKAGERFCVRNSGALAVVEGVGDHGCEYMTGG MVCLG TGRNFAAGMSGG+ +IYDP+
Sbjct: 1434 VGNVCLYGATAGKAFFRGKAGERFCVRNSGALAVVEGVGDHGCEYMTGGIMVCLGETGRNFAAGMSGGVGYIYDPE 1509
[Close]
BLAST of mRNA_H-elongata_contig135601.2520.1 vs. uniprot
Match: A0A7S2EMQ3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EMQ3_TRICV)

HSP 1 Score: 136 bits (342), Expect = 1.180e-38
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    1 LGNVCLYGATSGNAFFRGKAGERFCVRNSGALAVVEGVGDHGCEYMTGGNMVCLGPTGRNFAAGMSGGIAWIYDP 225
            +GNV LYGAT+G AFFRGK GERFCVRNSGALAVVEG+GDHGCEYMTGG +V LG TGRNFAAGMSGGIA+IYDP
Sbjct:   62 VGNVALYGATAGKAFFRGKGGERFCVRNSGALAVVEGLGDHGCEYMTGGKVVVLGDTGRNFAAGMSGGIAYIYDP 136
[Close]
BLAST of mRNA_H-elongata_contig135601.2520.1 vs. uniprot
Match: A0A1E7FRF6_9STRA (Glutamate synthase [NADPH] large chain n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FRF6_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.190e-38
Identity = 67/76 (88.16%), Postives = 72/76 (94.74%), Query Frame = 1 
Query:    1 LGNVCLYGATSGNAFFRGKAGERFCVRNSGALAVVEGVGDHGCEYMTGGNMVCLGPTGRNFAAGMSGGIAWIYDPK 228
            +GNVCLYGATSG AFF GKAGERFCVRNSGALAVVEGVGDHGCEYMTGG MVCLG TGRNFAAGMSGGI+++YDP+
Sbjct: 1352 VGNVCLYGATSGKAFFNGKAGERFCVRNSGALAVVEGVGDHGCEYMTGGIMVCLGETGRNFAAGMSGGISYVYDPE 1427
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig135601.2520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KK65_9PHAE1.450e-4294.74Reverse transcriptase domain-containing protein n=... [more]
D8LCE0_ECTSI1.460e-4294.74Glutamate synthase (NADH/NADPH-dependent), C-termi... [more]
A0A7S3AY96_9EUKA1.120e-4086.84Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S1GQI6_CYCTE5.250e-4089.47Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A835YLR4_9STRA1.850e-3988.16Glutamine amidotransferase type-2 domain-containin... [more]
A0A448ZBQ4_9STRA4.690e-3989.47Glutamine amidotransferase type-2 domain-containin... [more]
A0A1Z5KJI0_FISSO6.400e-3989.33Glutamate synthase (NADPH/NADH) n=2 Tax=Fistulifer... [more]
A0A7S3KXA2_9STRA8.730e-3988.16Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2EMQ3_TRICV1.180e-3885.33Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1E7FRF6_9STRA1.190e-3888.16Glutamate synthase [NADPH] large chain n=1 Tax=Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig135601contigH-elongata_contig135601:156..1213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.5
Seed ortholog evalue2.4e-36
Seed eggNOG ortholog2880.D8LCE0
Preferred nameGLT1
KEGG rclassRC00006,RC00010,RC02799
KEGG koko:K00264,ko:K17792
KEGG TC3.A.8.1
KEGG ReactionR00093,R00114,R00248
KEGG Pathwayko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230
GOsGO:0001505,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0015930,GO:0016040,GO:0016053,GO:0016491,GO:0016638,GO:0016639,GO:0017144,GO:0019676,GO:0019740,GO:0019752,GO:0030447,GO:0032502,GO:0036267,GO:0040007,GO:0042133,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045181,GO:0046394,GO:0046686,GO:0048589,GO:0050896,GO:0055114,GO:0060359,GO:0065007,GO:0065008,GO:0070783,GO:0071704,GO:0097054,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901698
EggNOG free text desc.L-glutamate biosynthetic process
EggNOG OGsCOG0069@1,KOG0399@2759
EC1.4.1.13,1.4.1.14
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03029
Hectar predicted targeting categoryother localisation
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929805.5514562-CDS-H-elongata_contig135601:155..2841622929805.5514562-CDS-H-elongata_contig135601:155..284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135601 156..284 -
1691679164.3620293-CDS-H-elongata_contig135601:155..2841691679164.3620293-CDS-H-elongata_contig135601:155..284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135601 156..284 -
1622929805.5703263-CDS-H-elongata_contig135601:1114..12131622929805.5703263-CDS-H-elongata_contig135601:1114..1213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135601 1115..1213 -
1691679164.3775804-CDS-H-elongata_contig135601:1114..12131691679164.3775804-CDS-H-elongata_contig135601:1114..1213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig135601 1115..1213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig135601.2520.1prot_H-elongata_contig135601.2520.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig135601 156..1213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig135601.2520.1

>prot_H-elongata_contig135601.2520.1 ID=prot_H-elongata_contig135601.2520.1|Name=mRNA_H-elongata_contig135601.2520.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
LGNVCLYGATSGNAFFRGKAGERFCVRNSGALAVVEGVGDHGCEYMTGGN
MVCLGPTGRNFAAGMSGGIAWIYDPK
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mRNA from alignment at H-elongata_contig135601:156..1213-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig135601.2520.1 ID=mRNA_H-elongata_contig135601.2520.1|Name=mRNA_H-elongata_contig135601.2520.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1058bp|location=Sequence derived from alignment at H-elongata_contig135601:156..1213- (Himanthalia elongata Himel1 dioecious)
CTAGGCAACGTATGCCTTTACGGAGCGACGTCGGGCAACGCGTTCTTCCG
CGGGAAGGCAGGGGAACGTTTCTGCGTGCGAAACTCTGGCGCGCTCGCGG
TAAGCGCGGCGCCTAGTTATATTGTTGTATATTAAACAAAATTGGTCCCC
CGGATGGTACCTCTCACGGCGCTAAGAAGGTGTGGATGTTCGGAAGGTTG
GAATGAGTTCAAGGTTTAAAAAATAAAAATAGTACCTCTTCCACTAATGT
TGCTGTAAAGATTAGGAAGGGGTTTCCCCCACCCCCTGCCTTGTCGTCGA
CCACACCCCTGCCTTGTGTCAGTGTAGGTCTTAGCTTTGGCTCCCCTAGT
TGAATCGGTTTCGATTTCATCCCCTTTCATTCCATTCCATTCCATTCCAT
TTGCCGCGTTTCGTCTTCTCGCGTCTTCTTCCCGTTCAGTCCCAAGGTTC
TCAGATATCAAGCATGTGCGGTGCGAGTTTACCAGCACACACACACACAC
ACACACGCACACATACACACACACACACACCTAGGAGGATCAATCCGAGT
GGCATAGAAGGACTAGGACGACAGGGCCGGATTGCGCGGTTATGTGCAAT
TTAATAAATACACACACACACACACACATACATAACACGTGTAGCCTAGA
AGGACTACAATAGTATGCAATTTAATAACTATACACACACACAGACAGAC
AGACAGACATACACAAGCTCCACAACTACGAAGCACGATTAATATTATTT
CTATATAGTTTAGAGAGATCTAGAGAGATTTAGAGAGATTTAGCATCCCC
CGATAATACATTCGAAGTATATATATATATATATATATTCATTTTTCCCC
CCCTGATGTGGCAAATGTAGCTGAGGTAATGTGTGGCGGGCGTCGTTGGT
TGTTGATGTCGTTGGTATCGCCGCCGCAGGTGGTTGAAGGTGTAGGAGAC
CACGGTTGCGAGTACATGACTGGGGGGAACATGGTCTGCCTTGGCCCGAC
CGGACGAAACTTCGCTGCGGGCATGAGCGGAGGCATCGCGTGGATTTACG
ATCCCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig135601:156..1213-

>mRNA_H-elongata_contig135601.2520.1 ID=mRNA_H-elongata_contig135601.2520.1|Name=mRNA_H-elongata_contig135601.2520.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig135601:156..1213- (Himanthalia elongata Himel1 dioecious)
CTAGGCAACGTATGCCTTTACGGAGCGACGTCGGGCAACGCGTTCTTCCG
CGGGAAGGCAGGGGAACGTTTCTGCGTGCGAAACTCTGGCGCGCTCGCGC
TAGGCAACGTATGCCTTTACGGAGCGACGTCGGGCAACGCGTTCTTCCGC
GGGAAGGCAGGGGAACGTTTCTGCGTGCGAAACTCTGGCGCGCTCGCGGT
GGTTGAAGGTGTAGGAGACCACGGTTGCGAGTACATGACTGGGGGGAACA
TGGTCTGCCTTGGCCCGACCGGACGAAACTTCGCTGCGGGCATGAGCGGA
GGCATCGCGTGGATTTACGATCCCAAGGTGGTTGAAGGTGTAGGAGACCA
CGGTTGCGAGTACATGACTGGGGGGAACATGGTCTGCCTTGGCCCGACCG
GACGAAACTTCGCTGCGGGCATGAGCGGAGGCATCGCGTGGATTTACGAT
CCCAAG
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