mRNA_H-elongata_contig13554.2516.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13554.2516.1
Unique NamemRNA_H-elongata_contig13554.2516.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Match: D7FV40_ECTSI (Valine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV40_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 5.550e-47
Identity = 79/93 (84.95%), Postives = 87/93 (93.55%), Query Frame = 1
Query:    1 ARSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRAGEALMVAPWPKVDDVALAVDEQAIDRFESLQSLVRSIRNVKAEYRVEPGKKVPAVV 279
            ARS+RRTLVYVFDTCLRLLHPFMP++TEALWQQLPR GEALMVAPWPKVDD  LAVDE AI RFE++QSLVRS+RN KAEY+VEPGKK+PAVV
Sbjct:  816 ARSSRRTLVYVFDTCLRLLHPFMPFITEALWQQLPRTGEALMVAPWPKVDDAPLAVDELAIGRFEAVQSLVRSVRNAKAEYKVEPGKKIPAVV 908          
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Match: A0A836CET5_9STRA (Valine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CET5_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.000e-36
Identity = 65/93 (69.89%), Postives = 78/93 (83.87%), Query Frame = 1
Query:    1 ARSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRAGEALMVAPWPKVDDVALAVDEQAIDRFESLQSLVRSIRNVKAEYRVEPGKKVPAVV 279
            A++ARR LVYVFDTCLRLLHPFMP+VTEALWQQLP AG+AL+VAPWP++ D  L VD  A  RFE+ Q+LVRSIRN +AEY+VEP +K+ A V
Sbjct:  773 AQTARRVLVYVFDTCLRLLHPFMPFVTEALWQQLPHAGDALIVAPWPQMGDAPLPVDAAATARFEAFQALVRSIRNARAEYKVEPARKISANV 865          
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Match: A0A7S2JDW8_9EUKA (Valine--tRNA ligase (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JDW8_9EUKA)

HSP 1 Score: 139 bits (351), Expect = 1.010e-36
Identity = 61/93 (65.59%), Postives = 78/93 (83.87%), Query Frame = 1
Query:    1 ARSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRAGEALMVAPWPKVDDVALAVDEQAIDRFESLQSLVRSIRNVKAEYRVEPGKKVPAVV 279
            A +ARRTLVYV D+CLRLLHPFMP++TE LWQ+LP  G +LM+APWP+ DD+AL  D++A+ +F SLQ+L RS+RN +AEYRVEPGKK+ A V
Sbjct:  375 AATARRTLVYVLDSCLRLLHPFMPFITEELWQRLPHEGPSLMIAPWPQRDDIALPTDDEAVAQFGSLQALARSVRNARAEYRVEPGKKIAATV 467          
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Match: A0A7S3F538_9EUKA (Valine--tRNA ligase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F538_9EUKA)

HSP 1 Score: 127 bits (320), Expect = 7.620e-34
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = 1
Query:    4 RSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRAGEALMVAPWPKVDDVALAVDEQAIDRFESLQSLVRSIRNVKAEYRVEPGKKVPAVV 279
            + A+RTLVYV D+CLRLLHPFMP++TE +WQ+LP  G +LM+A WP+ DD  L VD  A  RF SLQ+LVRS+RN +AEYRVEPGK + A V
Sbjct:  119 QQAQRTLVYVLDSCLRLLHPFMPFITEEVWQRLPHEGPSLMIADWPQRDDEPLCVDADAEQRFGSLQALVRSVRNARAEYRVEPGKLIAATV 210          
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Match: A0A7S3XNU9_HETAK (Valine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNU9_HETAK)

HSP 1 Score: 132 bits (331), Expect = 9.310e-34
Identity = 63/94 (67.02%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    1 ARSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRAGEALMVAPWPK-VDDVALAVDEQAIDRFESLQSLVRSIRNVKAEYRVEPGKKVPAVV 279
            A  ARR LVYVFDTCLRLLHPFMPYVTE LWQ+LPRAG+ALMVAPWPK   + AL V   A+ R+ +LQ+LVR++RN +AEY V+ G+KV A V
Sbjct:  763 AAMARRVLVYVFDTCLRLLHPFMPYVTEVLWQELPRAGDALMVAPWPKPAGEAALPVAAGAVRRYRALQALVRAVRNARAEYNVDQGRKVEAAV 856          
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Match: A0A4D9D6S5_9STRA (Valine--tRNA ligase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6S5_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.370e-33
Identity = 63/104 (60.58%), Postives = 76/104 (73.08%), Query Frame = 1
Query:    1 ARSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRAGEALMVAPWPKVD-DVALAVDEQAIDRFESLQSLVRSIRNVKAEYRV----------EPGKKVPAVV 279
            A + RR LVYVFDTCLRLLHPFMPY+TE LWQQLP  GEAL+VAPWP+ + +  L VD +AID+F   Q+LVR+IRN +AEY+V          EPGKKV A +
Sbjct:   63 ASTTRRVLVYVFDTCLRLLHPFMPYITEVLWQQLPHDGEALIVAPWPQEEGEEKLHVDREAIDQFRRFQALVRAIRNARAEYKVRREAGREGGVEPGKKVAAQI 166          
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Match: A0A6H5L030_9PHAE (Valine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L030_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 6.210e-33
Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 1
Query:    1 ARSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRAGEALMVAPWPKVDDVALAVDEQAIDR 189
            ARS+RRTLVYVFDTCLRLLHPFMP+VTEALWQQLPR GEALMVAPWPKVDD  LAVDE AI R
Sbjct:   79 ARSSRRTLVYVFDTCLRLLHPFMPFVTEALWQQLPRTGEALMVAPWPKVDDAPLAVDELAIGR 141          
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Match: A0A7S4ETN8_CHRCT (Valine--tRNA ligase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ETN8_CHRCT)

HSP 1 Score: 127 bits (318), Expect = 5.300e-32
Identity = 59/93 (63.44%), Postives = 73/93 (78.49%), Query Frame = 1
Query:    1 ARSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRAGEALMVAPWPKVDDVALAVDEQAIDRFESLQSLVRSIRNVKAEYRVEPGKKVPAVV 279
            A+ +RR LVYV DTCLRLLHP+MPY+TE LWQ+LP  GEALM++ WP+ +   LA D QA  +FES+Q+LVRS+RN +AEYRVE  KKV A V
Sbjct:  827 AQRSRRVLVYVLDTCLRLLHPYMPYITEELWQKLPHEGEALMISNWPQAEGDVLASDSQAEKQFESIQALVRSVRNARAEYRVEGFKKVAATV 919          
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Match: A0A7S2Y128_9STRA (Valine--tRNA ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y128_9STRA)

HSP 1 Score: 124 bits (310), Expect = 8.450e-32
Identity = 67/100 (67.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:    1 ARSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRA--GEALMVAPWPKV-----DDVALAVDEQAIDRFESLQSLVRSIRNVKAEYRVEPGKKVPAVV 279
            A+SARR LVYVFDTCLRLLHPFMP+VTEALWQQLP+     ALM A WPK       +  L VDE A  +F SLQSLVR+IRN +AEYRVEP KKV A V
Sbjct:  185 AQSARRVLVYVFDTCLRLLHPFMPFVTEALWQQLPKTTTSPALMTAAWPKPAALDGKESDLEVDEVAEAQFRSLQSLVRAIRNARAEYRVEPNKKVEARV 284          
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Match: A0A7S2AXJ4_9STRA (Valine--tRNA ligase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AXJ4_9STRA)

HSP 1 Score: 123 bits (309), Expect = 8.620e-31
Identity = 61/98 (62.24%), Postives = 76/98 (77.55%), Query Frame = 1
Query:    1 ARSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRAG----EALMVAPWPKVDDVA-LAVDEQAIDRFESLQSLVRSIRNVKAEYRVEPGKKVPAVV 279
            A+ + + LVYVFDTCLRLLHP+MPYVTE LWQQLP+      EALM A WPK+DD + L+ D +A+  F +LQ+LVRSIRN +AEY+VEPGKK+ A V
Sbjct:  646 AQVSLKVLVYVFDTCLRLLHPYMPYVTEILWQQLPKTADSTNEALMTATWPKLDDESDLSTDPEAMAHFTALQALVRSIRNARAEYQVEPGKKIAAQV 743          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV40_ECTSI5.550e-4784.95Valine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A836CET5_9STRA1.000e-3669.89Valine--tRNA ligase n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S2JDW8_9EUKA1.010e-3665.59Valine--tRNA ligase (Fragment) n=1 Tax=Haptolina b... [more]
A0A7S3F538_9EUKA7.620e-3463.04Valine--tRNA ligase n=1 Tax=Haptolina ericina TaxI... [more]
A0A7S3XNU9_HETAK9.310e-3467.02Valine--tRNA ligase n=1 Tax=Heterosigma akashiwo T... [more]
A0A4D9D6S5_9STRA1.370e-3360.58Valine--tRNA ligase n=1 Tax=Nannochloropsis salina... [more]
A0A6H5L030_9PHAE6.210e-3388.89Valine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A7S4ETN8_CHRCT5.300e-3263.44Valine--tRNA ligase n=1 Tax=Chrysotila carterae Ta... [more]
A0A7S2Y128_9STRA8.450e-3267.00Valine--tRNA ligase n=1 Tax=Fibrocapsa japonica Ta... [more]
A0A7S2AXJ4_9STRA8.620e-3162.24Valine--tRNA ligase n=1 Tax=Dictyocha speculum Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13554contigH-elongata_contig13554:7063..7797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue4.4e-40
Seed eggNOG ortholog2880.D7FV40
KEGG rclassRC00055,RC00523
KEGG koko:K01873
KEGG ReactionR03665
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004812,GO:0004832,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006438,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.valyl-tRNA aminoacylation
EggNOG OGsCOG0525@1,KOG0432@2759
EC6.1.1.9
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionValine--tRNA ligase
Ec32 orthologEc-12_005070.1
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929805.126936-CDS-H-elongata_contig13554:7062..71531622929805.126936-CDS-H-elongata_contig13554:7062..7153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13554 7063..7153 -
1691679164.1974895-CDS-H-elongata_contig13554:7062..71531691679164.1974895-CDS-H-elongata_contig13554:7062..7153Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13554 7063..7153 -
1622929805.1403236-CDS-H-elongata_contig13554:7609..77971622929805.1403236-CDS-H-elongata_contig13554:7609..7797Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13554 7610..7797 -
1691679164.213098-CDS-H-elongata_contig13554:7609..77971691679164.213098-CDS-H-elongata_contig13554:7609..7797Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13554 7610..7797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13554.2516.1prot_H-elongata_contig13554.2516.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13554 7063..7797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13554.2516.1

>prot_H-elongata_contig13554.2516.1 ID=prot_H-elongata_contig13554.2516.1|Name=mRNA_H-elongata_contig13554.2516.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
ARSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRAGEALMVAPWPKVD
DVALAVDEQAIDRFESLQSLVRSIRNVKAEYRVEPGKKVPAVV
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mRNA from alignment at H-elongata_contig13554:7063..7797-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13554.2516.1 ID=mRNA_H-elongata_contig13554.2516.1|Name=mRNA_H-elongata_contig13554.2516.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=735bp|location=Sequence derived from alignment at H-elongata_contig13554:7063..7797- (Himanthalia elongata Himel1 dioecious)
GCCCGGAGCGCTCGGCGGACCCTGGTGTATGTGTTCGACACGTGCCTCCG GCTGCTGCACCCGTTTATGCCGTACGTGACCGAGGCGCTGTGGCAGCAGC TTCCTCGGGCTGGGGAGGCGTTGATGGTAGCCCCGTGGCCGAAGGTGGAC GACGTCGCGCTCGCGGTGGACGAGCAGGCGATCGACAGGTGCCCATGTAT GCAAGATATATGAAAGAAAATATATGCGTTATTTTTCGGGGTGTGTAGAA GTAGGTTGGTGGATACCCTTGTTGGTGATTTGTGCTAAATATAAAGCCCT GGCCGTGATGGTCGGTGAGAATGCTGTTGCCACAATCGCTATTACAGTGT TGTGTCGTTATTGTTAAAATGAAAGAAATATCCAGGAGCTCTCGCAAAGC CGACAAACCCATGTGTGTGAGTGTGTGTGTGTATATGTGTGTGTTTATTA AATTGAACACAACCGCGCAATCCGGCCCTGCCACTCTAGGCTACATAAAT GTTTGTGTCGCTGTCCCTTCAAAAACGCTCTCGTGCCCTTTTTCGACTCA ACACTGTCCGCGCGCGTGCGTGTGTGTTTTGCCTTGTTTGGGTTGTTTCA AATATTTTTTGCACACTTGCAAAACGCGAGGCTGCGGTAACCAGGTTCGA ATCACTGCAGTCACTGGTGCGGAGCATCCGCAACGTTAAGGCGGAGTACA GGGTGGAGCCTGGAAAGAAAGTTCCCGCGGTTGTT
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Coding sequence (CDS) from alignment at H-elongata_contig13554:7063..7797-

>mRNA_H-elongata_contig13554.2516.1 ID=mRNA_H-elongata_contig13554.2516.1|Name=mRNA_H-elongata_contig13554.2516.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig13554:7063..7797- (Himanthalia elongata Himel1 dioecious)
GCCCGGAGCGCTCGGCGGACCCTGGTGTATGTGTTCGACACGTGCCTCCG
GCTGCTGCACCCGTTTATGCCGTACGTGACCGAGGCGCTGTGGCAGCAGC
TTCCTCGGGCTGGGGAGGCGTTGATGGTAGCCCCGTGGCCGAAGGTGGAC
GACGTCGCGCTCGCGGTGGACGAGCAGGCGATCGACAGGCCCGGAGCGCT
CGGCGGACCCTGGTGTATGTGTTCGACACGTGCCTCCGGCTGCTGCACCC
GTTTATGCCGTACGTGACCGAGGCGCTGTGGCAGCAGCTTCCTCGGGCTG
GGGAGGCGTTGATGGTAGCCCCGTGGCCGAAGGTGGACGACGTCGCGCTC
GCGGTGGACGAGCAGGCGATCGACAGGTTCGAATCACTGCAGTCACTGGT
GCGGAGCATCCGCAACGTTAAGGCGGAGTACAGGGTGGAGCCTGGAAAGA
AAGTTCCCGCGGTTGTTGTTCGAATCACTGCAGTCACTGGTGCGGAGCAT
CCGCAACGTTAAGGCGGAGTACAGGGTGGAGCCTGGAAAGAAAGTTCCCG
CGGTTGTT
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