mRNA_H-elongata_contig13554.2516.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Match: D7FV40_ECTSI (Valine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV40_ECTSI) HSP 1 Score: 169 bits (429), Expect = 5.550e-47 Identity = 79/93 (84.95%), Postives = 87/93 (93.55%), Query Frame = 1
Query: 1 ARSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRAGEALMVAPWPKVDDVALAVDEQAIDRFESLQSLVRSIRNVKAEYRVEPGKKVPAVV 279
ARS+RRTLVYVFDTCLRLLHPFMP++TEALWQQLPR GEALMVAPWPKVDD LAVDE AI RFE++QSLVRS+RN KAEY+VEPGKK+PAVV
Sbjct: 816 ARSSRRTLVYVFDTCLRLLHPFMPFITEALWQQLPRTGEALMVAPWPKVDDAPLAVDELAIGRFEAVQSLVRSVRNAKAEYKVEPGKKIPAVV 908
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Match: A0A836CET5_9STRA (Valine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CET5_9STRA) HSP 1 Score: 140 bits (353), Expect = 1.000e-36 Identity = 65/93 (69.89%), Postives = 78/93 (83.87%), Query Frame = 1
Query: 1 ARSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRAGEALMVAPWPKVDDVALAVDEQAIDRFESLQSLVRSIRNVKAEYRVEPGKKVPAVV 279
A++ARR LVYVFDTCLRLLHPFMP+VTEALWQQLP AG+AL+VAPWP++ D L VD A RFE+ Q+LVRSIRN +AEY+VEP +K+ A V
Sbjct: 773 AQTARRVLVYVFDTCLRLLHPFMPFVTEALWQQLPHAGDALIVAPWPQMGDAPLPVDAAATARFEAFQALVRSIRNARAEYKVEPARKISANV 865
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Match: A0A7S2JDW8_9EUKA (Valine--tRNA ligase (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JDW8_9EUKA) HSP 1 Score: 139 bits (351), Expect = 1.010e-36 Identity = 61/93 (65.59%), Postives = 78/93 (83.87%), Query Frame = 1
Query: 1 ARSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRAGEALMVAPWPKVDDVALAVDEQAIDRFESLQSLVRSIRNVKAEYRVEPGKKVPAVV 279
A +ARRTLVYV D+CLRLLHPFMP++TE LWQ+LP G +LM+APWP+ DD+AL D++A+ +F SLQ+L RS+RN +AEYRVEPGKK+ A V
Sbjct: 375 AATARRTLVYVLDSCLRLLHPFMPFITEELWQRLPHEGPSLMIAPWPQRDDIALPTDDEAVAQFGSLQALARSVRNARAEYRVEPGKKIAATV 467
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Match: A0A7S3F538_9EUKA (Valine--tRNA ligase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F538_9EUKA) HSP 1 Score: 127 bits (320), Expect = 7.620e-34 Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = 1
Query: 4 RSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRAGEALMVAPWPKVDDVALAVDEQAIDRFESLQSLVRSIRNVKAEYRVEPGKKVPAVV 279
+ A+RTLVYV D+CLRLLHPFMP++TE +WQ+LP G +LM+A WP+ DD L VD A RF SLQ+LVRS+RN +AEYRVEPGK + A V
Sbjct: 119 QQAQRTLVYVLDSCLRLLHPFMPFITEEVWQRLPHEGPSLMIADWPQRDDEPLCVDADAEQRFGSLQALVRSVRNARAEYRVEPGKLIAATV 210
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Match: A0A7S3XNU9_HETAK (Valine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNU9_HETAK) HSP 1 Score: 132 bits (331), Expect = 9.310e-34 Identity = 63/94 (67.02%), Postives = 75/94 (79.79%), Query Frame = 1
Query: 1 ARSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRAGEALMVAPWPK-VDDVALAVDEQAIDRFESLQSLVRSIRNVKAEYRVEPGKKVPAVV 279
A ARR LVYVFDTCLRLLHPFMPYVTE LWQ+LPRAG+ALMVAPWPK + AL V A+ R+ +LQ+LVR++RN +AEY V+ G+KV A V
Sbjct: 763 AAMARRVLVYVFDTCLRLLHPFMPYVTEVLWQELPRAGDALMVAPWPKPAGEAALPVAAGAVRRYRALQALVRAVRNARAEYNVDQGRKVEAAV 856
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Match: A0A4D9D6S5_9STRA (Valine--tRNA ligase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6S5_9STRA) HSP 1 Score: 126 bits (316), Expect = 1.370e-33 Identity = 63/104 (60.58%), Postives = 76/104 (73.08%), Query Frame = 1
Query: 1 ARSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRAGEALMVAPWPKVD-DVALAVDEQAIDRFESLQSLVRSIRNVKAEYRV----------EPGKKVPAVV 279
A + RR LVYVFDTCLRLLHPFMPY+TE LWQQLP GEAL+VAPWP+ + + L VD +AID+F Q+LVR+IRN +AEY+V EPGKKV A +
Sbjct: 63 ASTTRRVLVYVFDTCLRLLHPFMPYITEVLWQQLPHDGEALIVAPWPQEEGEEKLHVDREAIDQFRRFQALVRAIRNARAEYKVRREAGREGGVEPGKKVAAQI 166
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Match: A0A6H5L030_9PHAE (Valine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L030_9PHAE) HSP 1 Score: 120 bits (300), Expect = 6.210e-33 Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 1
Query: 1 ARSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRAGEALMVAPWPKVDDVALAVDEQAIDR 189
ARS+RRTLVYVFDTCLRLLHPFMP+VTEALWQQLPR GEALMVAPWPKVDD LAVDE AI R
Sbjct: 79 ARSSRRTLVYVFDTCLRLLHPFMPFVTEALWQQLPRTGEALMVAPWPKVDDAPLAVDELAIGR 141
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Match: A0A7S4ETN8_CHRCT (Valine--tRNA ligase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ETN8_CHRCT) HSP 1 Score: 127 bits (318), Expect = 5.300e-32 Identity = 59/93 (63.44%), Postives = 73/93 (78.49%), Query Frame = 1
Query: 1 ARSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRAGEALMVAPWPKVDDVALAVDEQAIDRFESLQSLVRSIRNVKAEYRVEPGKKVPAVV 279
A+ +RR LVYV DTCLRLLHP+MPY+TE LWQ+LP GEALM++ WP+ + LA D QA +FES+Q+LVRS+RN +AEYRVE KKV A V
Sbjct: 827 AQRSRRVLVYVLDTCLRLLHPYMPYITEELWQKLPHEGEALMISNWPQAEGDVLASDSQAEKQFESIQALVRSVRNARAEYRVEGFKKVAATV 919
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Match: A0A7S2Y128_9STRA (Valine--tRNA ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y128_9STRA) HSP 1 Score: 124 bits (310), Expect = 8.450e-32 Identity = 67/100 (67.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query: 1 ARSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRA--GEALMVAPWPKV-----DDVALAVDEQAIDRFESLQSLVRSIRNVKAEYRVEPGKKVPAVV 279
A+SARR LVYVFDTCLRLLHPFMP+VTEALWQQLP+ ALM A WPK + L VDE A +F SLQSLVR+IRN +AEYRVEP KKV A V
Sbjct: 185 AQSARRVLVYVFDTCLRLLHPFMPFVTEALWQQLPKTTTSPALMTAAWPKPAALDGKESDLEVDEVAEAQFRSLQSLVRAIRNARAEYRVEPNKKVEARV 284
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Match: A0A7S2AXJ4_9STRA (Valine--tRNA ligase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AXJ4_9STRA) HSP 1 Score: 123 bits (309), Expect = 8.620e-31 Identity = 61/98 (62.24%), Postives = 76/98 (77.55%), Query Frame = 1
Query: 1 ARSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRAG----EALMVAPWPKVDDVA-LAVDEQAIDRFESLQSLVRSIRNVKAEYRVEPGKKVPAVV 279
A+ + + LVYVFDTCLRLLHP+MPYVTE LWQQLP+ EALM A WPK+DD + L+ D +A+ F +LQ+LVRSIRN +AEY+VEPGKK+ A V
Sbjct: 646 AQVSLKVLVYVFDTCLRLLHPYMPYVTEILWQQLPKTADSTNEALMTATWPKLDDESDLSTDPEAMAHFTALQALVRSIRNARAEYQVEPGKKIAAQV 743 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13554.2516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13554.2516.1 >prot_H-elongata_contig13554.2516.1 ID=prot_H-elongata_contig13554.2516.1|Name=mRNA_H-elongata_contig13554.2516.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp ARSARRTLVYVFDTCLRLLHPFMPYVTEALWQQLPRAGEALMVAPWPKVDback to top mRNA from alignment at H-elongata_contig13554:7063..7797- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig13554.2516.1 ID=mRNA_H-elongata_contig13554.2516.1|Name=mRNA_H-elongata_contig13554.2516.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=735bp|location=Sequence derived from alignment at H-elongata_contig13554:7063..7797- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig13554:7063..7797- >mRNA_H-elongata_contig13554.2516.1 ID=mRNA_H-elongata_contig13554.2516.1|Name=mRNA_H-elongata_contig13554.2516.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig13554:7063..7797- (Himanthalia elongata Himel1 dioecious)back to top |